RNA–Protein interactions for RNA: ENST00000380281.5

PRPF40B-202, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRPF40B, Length 3,154 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-202ENST00000380281 SYNE1Q8NF91 8797 aaKnown RBP4.31□□□□□ -1.72
PRPF40B-202ENST00000380281 OBSCNQ5VST9 7968 aa4.28□□□□□ -1.72
PRPF40B-202ENST00000380281 KRTAP4-3Q9BYR4 195 aa4.27□□□□□ -1.73
PRPF40B-202ENST00000380281 LOC100996750A0A140TA64 210 aa4.26□□□□□ -1.73
PRPF40B-202ENST00000380281 MT1LQ93083 61 aa4.21□□□□□ -1.74
PRPF40B-202ENST00000380281 MT1EP04732 61 aa4.18□□□□□ -1.74
PRPF40B-202ENST00000380281 MT1GP13640 62 aa4.16□□□□□ -1.74
PRPF40B-202ENST00000380281 KRTAP12-4P60329 112 aa4.07□□□□□ -1.76
PRPF40B-202ENST00000380281 SYNE2Q8WXH0 6885 aaKnown RBP4.03□□□□□ -1.76
PRPF40B-202ENST00000380281 LCE2DQ5TA82 110 aaPredicted RBP4.01□□□□□ -1.77
PRPF40B-202ENST00000380281 SPRR2FQ96RM1 72 aa3.95□□□□□ -1.78
PRPF40B-202ENST00000380281 MT1MQ8N339 61 aa3.94□□□□□ -1.78
PRPF40B-202ENST00000380281 KRTAP4-9Q9BYQ8 210 aa3.94□□□□□ -1.78
PRPF40B-202ENST00000380281 MACF1Q9UPN3 7388 aaKnown RBP3.93□□□□□ -1.78
PRPF40B-202ENST00000380281 KRTAP19-6Q3LI70 58 aa3.92□□□□□ -1.78
PRPF40B-202ENST00000380281 LCE3BQ5TA77 95 aa3.92□□□□□ -1.78
PRPF40B-202ENST00000380281 KRTAP19-3Q7Z4W3 81 aa3.9□□□□□ -1.79
PRPF40B-202ENST00000380281 MDN1Q9NU22 5596 aa3.89□□□□□ -1.79
PRPF40B-202ENST00000380281 KRTAP19-4Q3LI73 84 aa3.74□□□□□ -1.81
PRPF40B-202ENST00000380281 KRTAP9-7A8MTY7 169 aa3.71□□□□□ -1.82
PRPF40B-202ENST00000380281 LCE5AQ5TCM9 118 aa3.7□□□□□ -1.82
PRPF40B-202ENST00000380281 KRTAP9-2Q9BYQ4 174 aa3.69□□□□□ -1.82
PRPF40B-202ENST00000380281 PRM1P04553 51 aa3.68□□□□□ -1.82
PRPF40B-202ENST00000380281 KRTAP6-1Q3LI64 71 aa3.67□□□□□ -1.82
PRPF40B-202ENST00000380281 KRTAP2-2Q9BYT5 123 aa3.61□□□□□ -1.83
PRPF40B-202ENST00000380281 KRTAP5-5Q701N2 237 aaPredicted RBP3.57□□□□□ -1.84
PRPF40B-202ENST00000380281 LCE3DQ9BYE3 92 aa3.56□□□□□ -1.84
PRPF40B-202ENST00000380281 KRTAP6-3Q3LI67 103 aa3.54□□□□□ -1.84
PRPF40B-202ENST00000380281 LCE3EQ5T5B0 92 aa3.52□□□□□ -1.85
PRPF40B-202ENST00000380281 KRTAP9-6A0A140TA67 174 aa3.51□□□□□ -1.85
PRPF40B-202ENST00000380281 SPRR2EP22531 72 aa3.51□□□□□ -1.85
PRPF40B-202ENST00000380281 SPRR2BP35325 72 aa3.51□□□□□ -1.85
PRPF40B-202ENST00000380281 SPRR2AP35326 72 aa3.51□□□□□ -1.85
PRPF40B-202ENST00000380281 LCE1AQ5T7P2 110 aa3.49□□□□□ -1.85
PRPF40B-202ENST00000380281 MT1AP04731 61 aa3.46□□□□□ -1.86
PRPF40B-202ENST00000380281 KRTAP6-2Q3LI66 62 aa3.39□□□□□ -1.87
PRPF40B-202ENST00000380281 LCE1EQ5T753 118 aa3.36□□□□□ -1.87
PRPF40B-202ENST00000380281 SPRR2DP22532 72 aa3.32□□□□□ -1.88
PRPF40B-202ENST00000380281 KRTAP9-4Q9BYQ2 154 aa3.26□□□□□ -1.89
PRPF40B-202ENST00000380281 KRTAP5-9P26371 169 aa3.23□□□□□ -1.89
PRPF40B-202ENST00000380281 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
PRPF40B-202ENST00000380281 LCE1DQ5T752 114 aa3.2□□□□□ -1.9
PRPF40B-202ENST00000380281 MT3P25713 68 aa3.16□□□□□ -1.9
PRPF40B-202ENST00000380281 MT4P47944 62 aa3.13□□□□□ -1.91
PRPF40B-202ENST00000380281 KRTAP4-6Q9BYQ5 205 aa3.06□□□□□ -1.92
PRPF40B-202ENST00000380281 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.04□□□□□ -1.92
PRPF40B-202ENST00000380281 NEBP20929 6669 aa2.91□□□□□ -1.94
PRPF40B-202ENST00000380281 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
PRPF40B-202ENST00000380281 LCE1BQ5T7P3 118 aa2.84□□□□□ -1.95
PRPF40B-202ENST00000380281 MUC5ACP98088 5654 aa2.82□□□□□ -1.96
PRPF40B-202ENST00000380281 KRTAP20-2Q3LI61 65 aa2.79□□□□□ -1.96
PRPF40B-202ENST00000380281 KRTAP4-11Q9BYQ6 195 aa2.79□□□□□ -1.96
PRPF40B-202ENST00000380281 KRTAP5-4Q6L8H1 288 aa2.78□□□□□ -1.96
PRPF40B-202ENST00000380281 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
PRPF40B-202ENST00000380281 KRTAP9-9Q9BYP9 154 aa2.67□□□□□ -1.98
PRPF40B-202ENST00000380281 LCE4AQ5TA78 99 aa2.61□□□□□ -1.99
PRPF40B-202ENST00000380281 KRTAP5-2Q701N4 177 aa2.6□□□□□ -1.99
PRPF40B-202ENST00000380281 KRTAP5-3Q6L8H2 238 aa2.55□□□□□ -2
PRPF40B-202ENST00000380281 KRTAP5-10Q6L8G5 202 aa2.5□□□□□ -2.01
PRPF40B-202ENST00000380281 KRTAP20-1Q3LI63 56 aa2.5□□□□□ -2.01
PRPF40B-202ENST00000380281 KRTAP4-4Q9BYR3 166 aa2.45□□□□□ -2.02
PRPF40B-202ENST00000380281 KRTAP4-2Q9BYR5 136 aa2.39□□□□□ -2.03
PRPF40B-202ENST00000380281 MUC5BQ9HC84 5762 aaPredicted RBP2.37□□□□□ -2.03
PRPF40B-202ENST00000380281 GPR98Q8WXG9 6306 aa2.32□□□□□ -2.04
PRPF40B-202ENST00000380281 KRTAP5-1Q6L8H4 278 aa2.31□□□□□ -2.04
PRPF40B-202ENST00000380281 AHNAK2Q8IVF2 5795 aa2.31□□□□□ -2.04
PRPF40B-202ENST00000380281 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
PRPF40B-202ENST00000380281 KRTAP4-12Q9BQ66 201 aa2.27□□□□□ -2.05
PRPF40B-202ENST00000380281 KRTAP21-2Q3LI59 83 aa2.26□□□□□ -2.05
PRPF40B-202ENST00000380281 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
PRPF40B-202ENST00000380281 KRTAP5-8O75690 187 aa2.14□□□□□ -2.07
PRPF40B-202ENST00000380281 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.03□□□□□ -2.08
PRPF40B-202ENST00000380281 KRTAP5-7Q6L8G8 165 aa1.97□□□□□ -2.09
PRPF40B-202ENST00000380281 KRTAP5-11Q6L8G4 156 aa1.92□□□□□ -2.1
PRPF40B-202ENST00000380281 AHNAKQ09666 5890 aaKnown RBP1.74□□□□□ -2.13
PRPF40B-202ENST00000380281 PHGR1C9JFL3 82 aa1.71□□□□□ -2.14
PRPF40B-202ENST00000380281 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 93.2 ms