RNA–Protein interactions for RNA: ENST00000377453.8

CLN5-201, Transcript of CLN5, intracellular trafficking protein, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLN5, Length 2,629 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-201ENST00000377453 KRTAP4-3Q9BYR4 195 aa6.87□□□□□ -1.31
CLN5-201ENST00000377453 MUC12Q9UKN1 5478 aa6.87□□□□□ -1.31
CLN5-201ENST00000377453 LOC100996750A0A140TA64 210 aa6.84□□□□□ -1.31
CLN5-201ENST00000377453 LCE2DQ5TA82 110 aaPredicted RBP6.78□□□□□ -1.32
CLN5-201ENST00000377453 MACF1Q9UPN3 7388 aaKnown RBP6.77□□□□□ -1.33
CLN5-201ENST00000377453 MT1GP13640 62 aa6.69□□□□□ -1.34
CLN5-201ENST00000377453 SYNE2Q8WXH0 6885 aaKnown RBP6.69□□□□□ -1.34
CLN5-201ENST00000377453 CRCT1Q9UGL9 99 aa6.68□□□□□ -1.34
CLN5-201ENST00000377453 DSTQ03001 7570 aaKnown RBP6.6□□□□□ -1.35
CLN5-201ENST00000377453 KRTAP9-2Q9BYQ4 174 aa6.59□□□□□ -1.36
CLN5-201ENST00000377453 KRTAP19-4Q3LI73 84 aa6.56□□□□□ -1.36
CLN5-201ENST00000377453 MT1MQ8N339 61 aa6.54□□□□□ -1.36
CLN5-201ENST00000377453 KRTAP19-3Q7Z4W3 81 aa6.49□□□□□ -1.37
CLN5-201ENST00000377453 MDN1Q9NU22 5596 aa6.44□□□□□ -1.38
CLN5-201ENST00000377453 SPRR2FQ96RM1 72 aa6.43□□□□□ -1.38
CLN5-201ENST00000377453 LCE5AQ5TCM9 118 aa6.25□□□□□ -1.41
CLN5-201ENST00000377453 KRTAP12-4P60329 112 aa6.23□□□□□ -1.41
CLN5-201ENST00000377453 LCE3BQ5TA77 95 aa6.23□□□□□ -1.41
CLN5-201ENST00000377453 KRTAP4-9Q9BYQ8 210 aa6.22□□□□□ -1.41
CLN5-201ENST00000377453 SYNE1Q8NF91 8797 aaKnown RBP6.19□□□□□ -1.42
CLN5-201ENST00000377453 KRTAP6-1Q3LI64 71 aa6.04□□□□□ -1.44
CLN5-201ENST00000377453 LCE1AQ5T7P2 110 aa6□□□□□ -1.45
CLN5-201ENST00000377453 KRTAP5-9P26371 169 aa5.98□□□□□ -1.45
CLN5-201ENST00000377453 SPRR2EP22531 72 aa5.95□□□□□ -1.46
CLN5-201ENST00000377453 SPRR2BP35325 72 aa5.95□□□□□ -1.46
CLN5-201ENST00000377453 SPRR2AP35326 72 aa5.95□□□□□ -1.46
CLN5-201ENST00000377453 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.88□□□□□ -1.47
CLN5-201ENST00000377453 KRTAP9-6A0A140TA67 174 aa5.83□□□□□ -1.48
CLN5-201ENST00000377453 MT1AP04731 61 aa5.81□□□□□ -1.48
CLN5-201ENST00000377453 LCE3DQ9BYE3 92 aa5.74□□□□□ -1.49
CLN5-201ENST00000377453 OBSCNQ5VST9 7968 aa5.71□□□□□ -1.5
CLN5-201ENST00000377453 KRTAP9-7A8MTY7 169 aa5.71□□□□□ -1.5
CLN5-201ENST00000377453 KRTAP5-5Q701N2 237 aaPredicted RBP5.71□□□□□ -1.5
CLN5-201ENST00000377453 SPRR2DP22532 72 aa5.68□□□□□ -1.5
CLN5-201ENST00000377453 KRTAP6-3Q3LI67 103 aa5.68□□□□□ -1.5
CLN5-201ENST00000377453 LCE3EQ5T5B0 92 aa5.65□□□□□ -1.51
CLN5-201ENST00000377453 PRM1P04553 51 aa5.56□□□□□ -1.52
CLN5-201ENST00000377453 NEBP20929 6669 aa5.52□□□□□ -1.53
CLN5-201ENST00000377453 KRTAP9-4Q9BYQ2 154 aa5.48□□□□□ -1.53
CLN5-201ENST00000377453 KRTAP6-2Q3LI66 62 aa5.4□□□□□ -1.54
CLN5-201ENST00000377453 MT3P25713 68 aa5.2□□□□□ -1.58
CLN5-201ENST00000377453 MT4P47944 62 aa5.12□□□□□ -1.59
CLN5-201ENST00000377453 KRTAP4-6Q9BYQ5 205 aa5.1□□□□□ -1.59
CLN5-201ENST00000377453 KRTAP5-4Q6L8H1 288 aa5.06□□□□□ -1.6
CLN5-201ENST00000377453 HMCN1Q96RW7 5635 aa4.99□□□□□ -1.61
CLN5-201ENST00000377453 KRTAP2-2Q9BYT5 123 aa4.84□□□□□ -1.63
CLN5-201ENST00000377453 KRTAP20-2Q3LI61 65 aa4.84□□□□□ -1.63
CLN5-201ENST00000377453 LCE1DQ5T752 114 aa4.84□□□□□ -1.63
CLN5-201ENST00000377453 LCE4AQ5TA78 99 aa4.8□□□□□ -1.64
CLN5-201ENST00000377453 KRTAP20-1Q3LI63 56 aa4.76□□□□□ -1.65
CLN5-201ENST00000377453 KRTAP5-2Q701N4 177 aa4.64□□□□□ -1.67
CLN5-201ENST00000377453 KRTAP5-3Q6L8H2 238 aa4.6□□□□□ -1.67
CLN5-201ENST00000377453 MUC5ACP98088 5654 aa4.56□□□□□ -1.68
CLN5-201ENST00000377453 LCE1BQ5T7P3 118 aa4.4□□□□□ -1.71
CLN5-201ENST00000377453 KRTAP4-11Q9BYQ6 195 aa4.27□□□□□ -1.73
CLN5-201ENST00000377453 LCE1EQ5T753 118 aa4.26□□□□□ -1.73
CLN5-201ENST00000377453 KRTAP5-10Q6L8G5 202 aa4.2□□□□□ -1.74
CLN5-201ENST00000377453 AHNAK2Q8IVF2 5795 aa4.1□□□□□ -1.75
CLN5-201ENST00000377453 KRTAP4-2Q9BYR5 136 aa4.08□□□□□ -1.76
CLN5-201ENST00000377453 KRTAP5-1Q6L8H4 278 aa4.08□□□□□ -1.76
CLN5-201ENST00000377453 KRTAP5-8O75690 187 aa3.94□□□□□ -1.78
CLN5-201ENST00000377453 LCE1CQ5T751 118 aa3.94□□□□□ -1.78
CLN5-201ENST00000377453 KRTAP21-2Q3LI59 83 aa3.84□□□□□ -1.8
CLN5-201ENST00000377453 MUC5BQ9HC84 5762 aaPredicted RBP3.8□□□□□ -1.8
CLN5-201ENST00000377453 KRTAP4-4Q9BYR3 166 aa3.74□□□□□ -1.81
CLN5-201ENST00000377453 GPR98Q8WXG9 6306 aa3.69□□□□□ -1.82
CLN5-201ENST00000377453 KRTAP5-7Q6L8G8 165 aa3.67□□□□□ -1.82
CLN5-201ENST00000377453 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.67□□□□□ -1.82
CLN5-201ENST00000377453 MUC19Q7Z5P9 8384 aa3.62□□□□□ -1.83
CLN5-201ENST00000377453 KRTAP4-12Q9BQ66 201 aa3.52□□□□□ -1.85
CLN5-201ENST00000377453 KRTAP9-9Q9BYP9 154 aa3.41□□□□□ -1.86
CLN5-201ENST00000377453 KRTAP21-1Q3LI58 79 aa3.38□□□□□ -1.87
CLN5-201ENST00000377453 KRTAP5-11Q6L8G4 156 aa3.38□□□□□ -1.87
CLN5-201ENST00000377453 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
CLN5-201ENST00000377453 PHGR1C9JFL3 82 aa2.96□□□□□ -1.94
CLN5-201ENST00000377453 AHNAKQ09666 5890 aaKnown RBP2.96□□□□□ -1.94
CLN5-201ENST00000377453 MUC16Q8WXI7 14507 aa2.03□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 92.8 ms