RNA–Protein interactions for RNA: ENST00000376751.7

RNF39-202, Transcript of ring finger protein 39, humanhuman

TSL 1 (best) BASIC

Gene RNF39, Length 1,970 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39-202ENST00000376751 MUC12Q9UKN1 5478 aa7.35□□□□□ -1.23
RNF39-202ENST00000376751 KRTAP19-3Q7Z4W3 81 aa7.26□□□□□ -1.25
RNF39-202ENST00000376751 KRTAP4-3Q9BYR4 195 aa7.26□□□□□ -1.25
RNF39-202ENST00000376751 MT1MQ8N339 61 aa7.22□□□□□ -1.25
RNF39-202ENST00000376751 MT1GP13640 62 aa7.19□□□□□ -1.26
RNF39-202ENST00000376751 SPRR2FQ96RM1 72 aa7.17□□□□□ -1.26
RNF39-202ENST00000376751 KRTAP9-6A0A140TA67 174 aa7.15□□□□□ -1.27
RNF39-202ENST00000376751 MACF1Q9UPN3 7388 aaKnown RBP7.14□□□□□ -1.27
RNF39-202ENST00000376751 KRTAP2-3P0C7H8 128 aa7.13□□□□□ -1.27
RNF39-202ENST00000376751 KRTAP2-4Q9BYR9 128 aa7.13□□□□□ -1.27
RNF39-202ENST00000376751 KRTAP2-1Q9BYU5 128 aa7.13□□□□□ -1.27
RNF39-202ENST00000376751 LOC100996750A0A140TA64 210 aa7.12□□□□□ -1.27
RNF39-202ENST00000376751 LCE5AQ5TCM9 118 aa7.08□□□□□ -1.28
RNF39-202ENST00000376751 INE1O15225 51 aa6.99□□□□□ -1.29
RNF39-202ENST00000376751 SYNE2Q8WXH0 6885 aaKnown RBP6.92□□□□□ -1.3
RNF39-202ENST00000376751 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.85□□□□□ -1.31
RNF39-202ENST00000376751 KRTAP5-9P26371 169 aa6.84□□□□□ -1.31
RNF39-202ENST00000376751 MDN1Q9NU22 5596 aa6.84□□□□□ -1.31
RNF39-202ENST00000376751 DSTQ03001 7570 aaKnown RBP6.78□□□□□ -1.32
RNF39-202ENST00000376751 LCE1AQ5T7P2 110 aa6.78□□□□□ -1.32
RNF39-202ENST00000376751 SPRR2EP22531 72 aa6.64□□□□□ -1.35
RNF39-202ENST00000376751 SPRR2BP35325 72 aa6.64□□□□□ -1.35
RNF39-202ENST00000376751 SPRR2AP35326 72 aa6.64□□□□□ -1.35
RNF39-202ENST00000376751 KRTAP6-3Q3LI67 103 aa6.57□□□□□ -1.36
RNF39-202ENST00000376751 KRTAP9-7A8MTY7 169 aa6.52□□□□□ -1.37
RNF39-202ENST00000376751 KRTAP6-1Q3LI64 71 aa6.48□□□□□ -1.37
RNF39-202ENST00000376751 KRTAP5-5Q701N2 237 aaPredicted RBP6.45□□□□□ -1.38
RNF39-202ENST00000376751 LCE3BQ5TA77 95 aa6.44□□□□□ -1.38
RNF39-202ENST00000376751 MT1AP04731 61 aa6.44□□□□□ -1.38
RNF39-202ENST00000376751 SPRR2DP22532 72 aa6.37□□□□□ -1.39
RNF39-202ENST00000376751 NEBP20929 6669 aa6.27□□□□□ -1.41
RNF39-202ENST00000376751 KRTAP4-9Q9BYQ8 210 aa6.26□□□□□ -1.41
RNF39-202ENST00000376751 SYNE1Q8NF91 8797 aaKnown RBP6.17□□□□□ -1.42
RNF39-202ENST00000376751 KRTAP12-4P60329 112 aa6.17□□□□□ -1.42
RNF39-202ENST00000376751 KRTAP9-4Q9BYQ2 154 aa6.07□□□□□ -1.44
RNF39-202ENST00000376751 LCE3DQ9BYE3 92 aa5.95□□□□□ -1.46
RNF39-202ENST00000376751 KRTAP6-2Q3LI66 62 aa5.86□□□□□ -1.47
RNF39-202ENST00000376751 KRTAP5-4Q6L8H1 288 aa5.86□□□□□ -1.47
RNF39-202ENST00000376751 LCE3EQ5T5B0 92 aa5.83□□□□□ -1.48
RNF39-202ENST00000376751 MT3P25713 68 aa5.76□□□□□ -1.49
RNF39-202ENST00000376751 KRTAP20-1Q3LI63 56 aa5.75□□□□□ -1.49
RNF39-202ENST00000376751 KRTAP2-2Q9BYT5 123 aa5.64□□□□□ -1.51
RNF39-202ENST00000376751 KRTAP4-6Q9BYQ5 205 aa5.63□□□□□ -1.51
RNF39-202ENST00000376751 MT4P47944 62 aa5.59□□□□□ -1.51
RNF39-202ENST00000376751 LCE4AQ5TA78 99 aa5.55□□□□□ -1.52
RNF39-202ENST00000376751 KRTAP20-2Q3LI61 65 aa5.49□□□□□ -1.53
RNF39-202ENST00000376751 HMCN1Q96RW7 5635 aa5.43□□□□□ -1.54
RNF39-202ENST00000376751 PRM1P04553 51 aa5.42□□□□□ -1.54
RNF39-202ENST00000376751 KRTAP5-2Q701N4 177 aa5.42□□□□□ -1.54
RNF39-202ENST00000376751 OBSCNQ5VST9 7968 aa5.4□□□□□ -1.55
RNF39-202ENST00000376751 LCE1DQ5T752 114 aa5.36□□□□□ -1.55
RNF39-202ENST00000376751 KRTAP5-3Q6L8H2 238 aa5.26□□□□□ -1.57
RNF39-202ENST00000376751 MUC5ACP98088 5654 aa4.87□□□□□ -1.63
RNF39-202ENST00000376751 LCE1EQ5T753 118 aa4.82□□□□□ -1.64
RNF39-202ENST00000376751 AHNAK2Q8IVF2 5795 aa4.77□□□□□ -1.65
RNF39-202ENST00000376751 LCE1BQ5T7P3 118 aa4.69□□□□□ -1.66
RNF39-202ENST00000376751 KRTAP5-1Q6L8H4 278 aa4.64□□□□□ -1.67
RNF39-202ENST00000376751 KRTAP5-10Q6L8G5 202 aa4.62□□□□□ -1.67
RNF39-202ENST00000376751 KRTAP4-11Q9BYQ6 195 aa4.61□□□□□ -1.67
RNF39-202ENST00000376751 KRTAP4-2Q9BYR5 136 aa4.61□□□□□ -1.67
RNF39-202ENST00000376751 LCE1CQ5T751 118 aa4.54□□□□□ -1.68
RNF39-202ENST00000376751 GPR98Q8WXG9 6306 aa4.46□□□□□ -1.7
RNF39-202ENST00000376751 KRTAP5-8O75690 187 aa4.44□□□□□ -1.7
RNF39-202ENST00000376751 KRTAP5-7Q6L8G8 165 aa4.34□□□□□ -1.71
RNF39-202ENST00000376751 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.29□□□□□ -1.72
RNF39-202ENST00000376751 KRTAP21-2Q3LI59 83 aa4.2□□□□□ -1.74
RNF39-202ENST00000376751 KRTAP5-11Q6L8G4 156 aa3.96□□□□□ -1.77
RNF39-202ENST00000376751 MUC5BQ9HC84 5762 aaPredicted RBP3.92□□□□□ -1.78
RNF39-202ENST00000376751 KRTAP9-9Q9BYP9 154 aa3.91□□□□□ -1.78
RNF39-202ENST00000376751 KRTAP4-4Q9BYR3 166 aa3.82□□□□□ -1.8
RNF39-202ENST00000376751 KRTAP4-12Q9BQ66 201 aa3.77□□□□□ -1.81
RNF39-202ENST00000376751 AHNAKQ09666 5890 aaKnown RBP3.65□□□□□ -1.83
RNF39-202ENST00000376751 PHGR1C9JFL3 82 aa3.42□□□□□ -1.86
RNF39-202ENST00000376751 KRTAP21-1Q3LI58 79 aa3.37□□□□□ -1.87
RNF39-202ENST00000376751 LCE1FQ5T754 118 aa3.33□□□□□ -1.88
RNF39-202ENST00000376751 MUC19Q7Z5P9 8384 aa3.28□□□□□ -1.88
RNF39-202ENST00000376751 MUC16Q8WXI7 14507 aa2.28□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms