RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 MACF1Q9UPN3 7388 aaKnown RBP6.83□□□□□ -1.32
VSX1-202ENST00000376709 CRCT1Q9UGL9 99 aa6.82□□□□□ -1.32
VSX1-202ENST00000376709 SPRR2FQ96RM1 72 aa6.77□□□□□ -1.33
VSX1-202ENST00000376709 KRTAP19-3Q7Z4W3 81 aa6.76□□□□□ -1.33
VSX1-202ENST00000376709 MT1GP13640 62 aa6.72□□□□□ -1.33
VSX1-202ENST00000376709 INE1O15225 51 aa6.72□□□□□ -1.33
VSX1-202ENST00000376709 MT1MQ8N339 61 aa6.7□□□□□ -1.34
VSX1-202ENST00000376709 KRTAP4-3Q9BYR4 195 aa6.69□□□□□ -1.34
VSX1-202ENST00000376709 KRTAP2-3P0C7H8 128 aa6.64□□□□□ -1.35
VSX1-202ENST00000376709 KRTAP2-4Q9BYR9 128 aa6.64□□□□□ -1.35
VSX1-202ENST00000376709 KRTAP2-1Q9BYU5 128 aa6.64□□□□□ -1.35
VSX1-202ENST00000376709 SYNE2Q8WXH0 6885 aaKnown RBP6.64□□□□□ -1.35
VSX1-202ENST00000376709 MDN1Q9NU22 5596 aa6.6□□□□□ -1.35
VSX1-202ENST00000376709 LOC100996750A0A140TA64 210 aa6.59□□□□□ -1.35
VSX1-202ENST00000376709 LCE5AQ5TCM9 118 aa6.59□□□□□ -1.35
VSX1-202ENST00000376709 KRTAP5-9P26371 169 aa6.49□□□□□ -1.37
VSX1-202ENST00000376709 DSTQ03001 7570 aaKnown RBP6.41□□□□□ -1.38
VSX1-202ENST00000376709 LCE1AQ5T7P2 110 aa6.4□□□□□ -1.39
VSX1-202ENST00000376709 SPRR2EP22531 72 aa6.31□□□□□ -1.4
VSX1-202ENST00000376709 SPRR2BP35325 72 aa6.31□□□□□ -1.4
VSX1-202ENST00000376709 SPRR2AP35326 72 aa6.31□□□□□ -1.4
VSX1-202ENST00000376709 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.3□□□□□ -1.4
VSX1-202ENST00000376709 KRTAP9-6A0A140TA67 174 aa6.29□□□□□ -1.4
VSX1-202ENST00000376709 KRTAP6-3Q3LI67 103 aa6.2□□□□□ -1.42
VSX1-202ENST00000376709 SPRR2DP22532 72 aa6.06□□□□□ -1.44
VSX1-202ENST00000376709 LCE3BQ5TA77 95 aa6.03□□□□□ -1.44
VSX1-202ENST00000376709 KRTAP6-1Q3LI64 71 aa6□□□□□ -1.45
VSX1-202ENST00000376709 MT1AP04731 61 aa5.98□□□□□ -1.45
VSX1-202ENST00000376709 KRTAP5-5Q701N2 237 aaPredicted RBP5.97□□□□□ -1.45
VSX1-202ENST00000376709 KRTAP9-7A8MTY7 169 aa5.83□□□□□ -1.48
VSX1-202ENST00000376709 KRTAP12-4P60329 112 aa5.82□□□□□ -1.48
VSX1-202ENST00000376709 KRTAP4-9Q9BYQ8 210 aa5.82□□□□□ -1.48
VSX1-202ENST00000376709 NEBP20929 6669 aa5.81□□□□□ -1.48
VSX1-202ENST00000376709 SYNE1Q8NF91 8797 aaKnown RBP5.79□□□□□ -1.48
VSX1-202ENST00000376709 KRTAP9-4Q9BYQ2 154 aa5.65□□□□□ -1.5
VSX1-202ENST00000376709 LCE3DQ9BYE3 92 aa5.61□□□□□ -1.51
VSX1-202ENST00000376709 KRTAP5-4Q6L8H1 288 aa5.5□□□□□ -1.53
VSX1-202ENST00000376709 LCE3EQ5T5B0 92 aa5.5□□□□□ -1.53
VSX1-202ENST00000376709 KRTAP6-2Q3LI66 62 aa5.45□□□□□ -1.54
VSX1-202ENST00000376709 MT3P25713 68 aa5.4□□□□□ -1.54
VSX1-202ENST00000376709 MT4P47944 62 aa5.32□□□□□ -1.56
VSX1-202ENST00000376709 KRTAP4-6Q9BYQ5 205 aa5.31□□□□□ -1.56
VSX1-202ENST00000376709 LCE4AQ5TA78 99 aa5.29□□□□□ -1.56
VSX1-202ENST00000376709 KRTAP2-2Q9BYT5 123 aa5.26□□□□□ -1.57
VSX1-202ENST00000376709 HMCN1Q96RW7 5635 aa5.22□□□□□ -1.57
VSX1-202ENST00000376709 OBSCNQ5VST9 7968 aa5.19□□□□□ -1.58
VSX1-202ENST00000376709 KRTAP20-2Q3LI61 65 aa5.18□□□□□ -1.58
VSX1-202ENST00000376709 KRTAP20-1Q3LI63 56 aa5.18□□□□□ -1.58
VSX1-202ENST00000376709 PRM1P04553 51 aa5.14□□□□□ -1.59
VSX1-202ENST00000376709 LCE1DQ5T752 114 aa5.13□□□□□ -1.59
VSX1-202ENST00000376709 KRTAP5-2Q701N4 177 aa5.06□□□□□ -1.6
VSX1-202ENST00000376709 KRTAP5-3Q6L8H2 238 aa4.95□□□□□ -1.62
VSX1-202ENST00000376709 MUC5ACP98088 5654 aa4.51□□□□□ -1.69
VSX1-202ENST00000376709 LCE1EQ5T753 118 aa4.51□□□□□ -1.69
VSX1-202ENST00000376709 AHNAK2Q8IVF2 5795 aa4.41□□□□□ -1.7
VSX1-202ENST00000376709 LCE1BQ5T7P3 118 aa4.4□□□□□ -1.71
VSX1-202ENST00000376709 KRTAP4-11Q9BYQ6 195 aa4.4□□□□□ -1.71
VSX1-202ENST00000376709 KRTAP5-1Q6L8H4 278 aa4.36□□□□□ -1.71
VSX1-202ENST00000376709 KRTAP5-10Q6L8G5 202 aa4.29□□□□□ -1.72
VSX1-202ENST00000376709 KRTAP4-2Q9BYR5 136 aa4.27□□□□□ -1.73
VSX1-202ENST00000376709 LCE1CQ5T751 118 aa4.24□□□□□ -1.73
VSX1-202ENST00000376709 KRTAP9-9Q9BYP9 154 aa4.23□□□□□ -1.73
VSX1-202ENST00000376709 KRTAP5-8O75690 187 aa4.22□□□□□ -1.73
VSX1-202ENST00000376709 KRTAP4-12Q9BQ66 201 aa4.16□□□□□ -1.74
VSX1-202ENST00000376709 KRTAP5-7Q6L8G8 165 aa4.09□□□□□ -1.75
VSX1-202ENST00000376709 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.98□□□□□ -1.77
VSX1-202ENST00000376709 GPR98Q8WXG9 6306 aa3.98□□□□□ -1.77
VSX1-202ENST00000376709 KRTAP21-2Q3LI59 83 aa3.89□□□□□ -1.79
VSX1-202ENST00000376709 MUC5BQ9HC84 5762 aaPredicted RBP3.81□□□□□ -1.8
VSX1-202ENST00000376709 KRTAP5-11Q6L8G4 156 aa3.7□□□□□ -1.82
VSX1-202ENST00000376709 KRTAP4-4Q9BYR3 166 aa3.53□□□□□ -1.84
VSX1-202ENST00000376709 PHGR1C9JFL3 82 aa3.19□□□□□ -1.9
VSX1-202ENST00000376709 KRTAP21-1Q3LI58 79 aa3.18□□□□□ -1.9
VSX1-202ENST00000376709 LCE1FQ5T754 118 aa3.18□□□□□ -1.9
VSX1-202ENST00000376709 AHNAKQ09666 5890 aaKnown RBP3.18□□□□□ -1.9
VSX1-202ENST00000376709 MUC19Q7Z5P9 8384 aa3.16□□□□□ -1.9
VSX1-202ENST00000376709 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 131.2 ms