RNA–Protein interactions for RNA: ENST00000372459.6

CTSA-203, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,972 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-203ENST00000372459 SPRR2FQ96RM1 72 aa8.57□□□□□ -1.04
CTSA-203ENST00000372459 INE1O15225 51 aa8.57□□□□□ -1.04
CTSA-203ENST00000372459 KRTAP19-3Q7Z4W3 81 aa8.55□□□□□ -1.04
CTSA-203ENST00000372459 MUC12Q9UKN1 5478 aa8.53□□□□□ -1.04
CTSA-203ENST00000372459 MT1GP13640 62 aa8.5□□□□□ -1.05
CTSA-203ENST00000372459 KRTAP9-6A8MVA2 160 aa8.46□□□□□ -1.05
CTSA-203ENST00000372459 MT1MQ8N339 61 aa8.42□□□□□ -1.06
CTSA-203ENST00000372459 SYNE2Q8WXH0 6885 aaKnown RBP8.38□□□□□ -1.07
CTSA-203ENST00000372459 LCE5AQ5TCM9 118 aa8.35□□□□□ -1.07
CTSA-203ENST00000372459 KRTAP5-9P26371 169 aa8.33□□□□□ -1.08
CTSA-203ENST00000372459 KRTAP9-6A0A140TA67 174 aa8.3□□□□□ -1.08
CTSA-203ENST00000372459 KRTAP4-3Q9BYR4 195 aa8.3□□□□□ -1.08
CTSA-203ENST00000372459 KRTAP2-3P0C7H8 128 aa8.13□□□□□ -1.11
CTSA-203ENST00000372459 KRTAP2-4Q9BYR9 128 aa8.13□□□□□ -1.11
CTSA-203ENST00000372459 KRTAP2-1Q9BYU5 128 aa8.13□□□□□ -1.11
CTSA-203ENST00000372459 LCE1AQ5T7P2 110 aa8.13□□□□□ -1.11
CTSA-203ENST00000372459 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.1□□□□□ -1.11
CTSA-203ENST00000372459 MDN1Q9NU22 5596 aa8.09□□□□□ -1.11
CTSA-203ENST00000372459 LOC100996750A0A140TA64 210 aa8.09□□□□□ -1.11
CTSA-203ENST00000372459 SPRR2EP22531 72 aa8.04□□□□□ -1.12
CTSA-203ENST00000372459 SPRR2BP35325 72 aa8.04□□□□□ -1.12
CTSA-203ENST00000372459 SPRR2AP35326 72 aa8.04□□□□□ -1.12
CTSA-203ENST00000372459 KRTAP6-3Q3LI67 103 aa8.02□□□□□ -1.13
CTSA-203ENST00000372459 DSTQ03001 7570 aaKnown RBP7.93□□□□□ -1.14
CTSA-203ENST00000372459 SPRR2DP22532 72 aa7.73□□□□□ -1.17
CTSA-203ENST00000372459 KRTAP9-7A8MTY7 169 aa7.59□□□□□ -1.2
CTSA-203ENST00000372459 KRTAP5-5Q701N2 237 aaPredicted RBP7.55□□□□□ -1.2
CTSA-203ENST00000372459 MT1AP04731 61 aa7.5□□□□□ -1.21
CTSA-203ENST00000372459 KRTAP6-1Q3LI64 71 aa7.45□□□□□ -1.22
CTSA-203ENST00000372459 NEBP20929 6669 aa7.44□□□□□ -1.22
CTSA-203ENST00000372459 LCE3BQ5TA77 95 aa7.39□□□□□ -1.23
CTSA-203ENST00000372459 SYNE1Q8NF91 8797 aaKnown RBP7.15□□□□□ -1.26
CTSA-203ENST00000372459 KRTAP9-4Q9BYQ2 154 aa7.11□□□□□ -1.27
CTSA-203ENST00000372459 KRTAP12-4P60329 112 aa7.08□□□□□ -1.28
CTSA-203ENST00000372459 KRTAP5-4Q6L8H1 288 aa7.04□□□□□ -1.28
CTSA-203ENST00000372459 KRTAP4-9Q9BYQ8 210 aa6.98□□□□□ -1.29
CTSA-203ENST00000372459 LCE4AQ5TA78 99 aa6.84□□□□□ -1.32
CTSA-203ENST00000372459 KRTAP2-2Q9BYT5 123 aa6.83□□□□□ -1.32
CTSA-203ENST00000372459 KRTAP6-2Q3LI66 62 aa6.8□□□□□ -1.32
CTSA-203ENST00000372459 MT3P25713 68 aa6.79□□□□□ -1.32
CTSA-203ENST00000372459 LCE3DQ9BYE3 92 aa6.78□□□□□ -1.32
CTSA-203ENST00000372459 MT4P47944 62 aa6.71□□□□□ -1.33
CTSA-203ENST00000372459 KRTAP20-1Q3LI63 56 aa6.71□□□□□ -1.33
CTSA-203ENST00000372459 KRTAP4-6Q9BYQ5 205 aa6.69□□□□□ -1.34
CTSA-203ENST00000372459 LCE3EQ5T5B0 92 aa6.64□□□□□ -1.35
CTSA-203ENST00000372459 KRTAP20-2Q3LI61 65 aa6.58□□□□□ -1.36
CTSA-203ENST00000372459 LCE1DQ5T752 114 aa6.52□□□□□ -1.37
CTSA-203ENST00000372459 HMCN1Q96RW7 5635 aa6.46□□□□□ -1.38
CTSA-203ENST00000372459 KRTAP5-2Q701N4 177 aa6.44□□□□□ -1.38
CTSA-203ENST00000372459 KRTAP5-3Q6L8H2 238 aa6.31□□□□□ -1.4
CTSA-203ENST00000372459 PRM1P04553 51 aa6.26□□□□□ -1.41
CTSA-203ENST00000372459 OBSCNQ5VST9 7968 aa6.23□□□□□ -1.41
CTSA-203ENST00000372459 LCE1EQ5T753 118 aa5.79□□□□□ -1.48
CTSA-203ENST00000372459 KRTAP4-11Q9BYQ6 195 aa5.62□□□□□ -1.51
CTSA-203ENST00000372459 AHNAK2Q8IVF2 5795 aa5.53□□□□□ -1.52
CTSA-203ENST00000372459 KRTAP5-1Q6L8H4 278 aa5.53□□□□□ -1.52
CTSA-203ENST00000372459 MUC5ACP98088 5654 aa5.51□□□□□ -1.53
CTSA-203ENST00000372459 LCE1BQ5T7P3 118 aa5.49□□□□□ -1.53
CTSA-203ENST00000372459 KRTAP5-10Q6L8G5 202 aa5.47□□□□□ -1.53
CTSA-203ENST00000372459 LCE1CQ5T751 118 aa5.41□□□□□ -1.54
CTSA-203ENST00000372459 KRTAP4-2Q9BYR5 136 aa5.4□□□□□ -1.55
CTSA-203ENST00000372459 KRTAP5-8O75690 187 aa5.39□□□□□ -1.55
CTSA-203ENST00000372459 KRTAP5-7Q6L8G8 165 aa5.27□□□□□ -1.57
CTSA-203ENST00000372459 GPR98Q8WXG9 6306 aa5.08□□□□□ -1.6
CTSA-203ENST00000372459 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.08□□□□□ -1.6
CTSA-203ENST00000372459 KRTAP21-2Q3LI59 83 aa4.85□□□□□ -1.63
CTSA-203ENST00000372459 KRTAP9-9Q9BYP9 154 aa4.8□□□□□ -1.64
CTSA-203ENST00000372459 KRTAP5-11Q6L8G4 156 aa4.74□□□□□ -1.65
CTSA-203ENST00000372459 MUC5BQ9HC84 5762 aaPredicted RBP4.63□□□□□ -1.67
CTSA-203ENST00000372459 KRTAP4-12Q9BQ66 201 aa4.42□□□□□ -1.7
CTSA-203ENST00000372459 KRTAP4-4Q9BYR3 166 aa4.33□□□□□ -1.72
CTSA-203ENST00000372459 AHNAKQ09666 5890 aaKnown RBP4.2□□□□□ -1.74
CTSA-203ENST00000372459 LCE1FQ5T754 118 aa4.17□□□□□ -1.74
CTSA-203ENST00000372459 PHGR1C9JFL3 82 aa4.07□□□□□ -1.76
CTSA-203ENST00000372459 KRTAP21-1Q3LI58 79 aa3.99□□□□□ -1.77
CTSA-203ENST00000372459 MUC19Q7Z5P9 8384 aa3.66□□□□□ -1.82
CTSA-203ENST00000372459 MUC16Q8WXI7 14507 aa2.66□□□□□ -1.98
Retrieved 77 of 20,778 RNA–protein pairs in 5.6 ms