RNA–Protein interactions for RNA: ENST00000369407.3

PHGDH-201, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 3,180 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-201ENST00000369407 KRTAP4-3Q9BYR4 195 aa4.09□□□□□ -1.76
PHGDH-201ENST00000369407 DSTQ03001 7570 aaKnown RBP4.07□□□□□ -1.76
PHGDH-201ENST00000369407 OBSCNQ5VST9 7968 aa4.07□□□□□ -1.76
PHGDH-201ENST00000369407 MUC12Q9UKN1 5478 aa4.06□□□□□ -1.76
PHGDH-201ENST00000369407 CRCT1Q9UGL9 99 aa4.06□□□□□ -1.76
PHGDH-201ENST00000369407 KRTAP12-4P60329 112 aa4.04□□□□□ -1.76
PHGDH-201ENST00000369407 SYNE1Q8NF91 8797 aaKnown RBP4.03□□□□□ -1.76
PHGDH-201ENST00000369407 FCGBPQ9Y6R7 5405 aaPredicted RBP4.02□□□□□ -1.77
PHGDH-201ENST00000369407 MT1GP13640 62 aa4.01□□□□□ -1.77
PHGDH-201ENST00000369407 LCE2DQ5TA82 110 aaPredicted RBP3.86□□□□□ -1.79
PHGDH-201ENST00000369407 KRTAP19-4Q3LI73 84 aa3.86□□□□□ -1.79
PHGDH-201ENST00000369407 KRTAP4-9Q9BYQ8 210 aa3.83□□□□□ -1.8
PHGDH-201ENST00000369407 MT1MQ8N339 61 aa3.82□□□□□ -1.8
PHGDH-201ENST00000369407 SYNE2Q8WXH0 6885 aaKnown RBP3.81□□□□□ -1.8
PHGDH-201ENST00000369407 MACF1Q9UPN3 7388 aaKnown RBP3.81□□□□□ -1.8
PHGDH-201ENST00000369407 LCE3BQ5TA77 95 aa3.79□□□□□ -1.8
PHGDH-201ENST00000369407 KRTAP19-6Q3LI70 58 aa3.79□□□□□ -1.8
PHGDH-201ENST00000369407 KRTAP19-3Q7Z4W3 81 aa3.76□□□□□ -1.81
PHGDH-201ENST00000369407 SPRR2FQ96RM1 72 aa3.71□□□□□ -1.82
PHGDH-201ENST00000369407 MDN1Q9NU22 5596 aa3.69□□□□□ -1.82
PHGDH-201ENST00000369407 KRTAP9-7A8MTY7 169 aa3.66□□□□□ -1.82
PHGDH-201ENST00000369407 PRM1P04553 51 aa3.65□□□□□ -1.82
PHGDH-201ENST00000369407 KRTAP9-2Q9BYQ4 174 aa3.61□□□□□ -1.83
PHGDH-201ENST00000369407 KRTAP6-1Q3LI64 71 aa3.58□□□□□ -1.84
PHGDH-201ENST00000369407 LCE5AQ5TCM9 118 aa3.58□□□□□ -1.84
PHGDH-201ENST00000369407 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
PHGDH-201ENST00000369407 KRTAP5-5Q701N2 237 aaPredicted RBP3.5□□□□□ -1.85
PHGDH-201ENST00000369407 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
PHGDH-201ENST00000369407 LCE1AQ5T7P2 110 aa3.49□□□□□ -1.85
PHGDH-201ENST00000369407 MT1AP04731 61 aa3.48□□□□□ -1.85
PHGDH-201ENST00000369407 KRTAP6-3Q3LI67 103 aa3.46□□□□□ -1.86
PHGDH-201ENST00000369407 KRTAP9-6A0A140TA67 174 aa3.43□□□□□ -1.86
PHGDH-201ENST00000369407 LCE1EQ5T753 118 aa3.37□□□□□ -1.87
PHGDH-201ENST00000369407 SPRR2EP22531 72 aa3.36□□□□□ -1.87
PHGDH-201ENST00000369407 SPRR2BP35325 72 aa3.36□□□□□ -1.87
PHGDH-201ENST00000369407 SPRR2AP35326 72 aa3.36□□□□□ -1.87
PHGDH-201ENST00000369407 KRTAP6-2Q3LI66 62 aa3.34□□□□□ -1.87
PHGDH-201ENST00000369407 KRTAP2-2Q9BYT5 123 aa3.28□□□□□ -1.88
PHGDH-201ENST00000369407 KRTAP9-4Q9BYQ2 154 aa3.21□□□□□ -1.9
PHGDH-201ENST00000369407 SPRR2DP22532 72 aa3.19□□□□□ -1.9
PHGDH-201ENST00000369407 KRTAP5-9P26371 169 aa3.19□□□□□ -1.9
PHGDH-201ENST00000369407 LCE1DQ5T752 114 aa3.18□□□□□ -1.9
PHGDH-201ENST00000369407 MUC19Q7Z5P9 8384 aa3.18□□□□□ -1.9
PHGDH-201ENST00000369407 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.11□□□□□ -1.91
PHGDH-201ENST00000369407 MT3P25713 68 aa3.06□□□□□ -1.92
PHGDH-201ENST00000369407 MT4P47944 62 aa2.96□□□□□ -1.94
PHGDH-201ENST00000369407 KRTAP4-6Q9BYQ5 205 aa2.9□□□□□ -1.95
PHGDH-201ENST00000369407 NEBP20929 6669 aa2.89□□□□□ -1.95
PHGDH-201ENST00000369407 KRTAP4-11Q9BYQ6 195 aa2.8□□□□□ -1.96
PHGDH-201ENST00000369407 HMCN1Q96RW7 5635 aa2.78□□□□□ -1.96
PHGDH-201ENST00000369407 MUC5ACP98088 5654 aa2.77□□□□□ -1.97
PHGDH-201ENST00000369407 LCE1FQ5T754 118 aa2.75□□□□□ -1.97
PHGDH-201ENST00000369407 KRTAP5-4Q6L8H1 288 aa2.71□□□□□ -1.98
PHGDH-201ENST00000369407 KRTAP20-2Q3LI61 65 aa2.68□□□□□ -1.98
PHGDH-201ENST00000369407 LCE1BQ5T7P3 118 aa2.61□□□□□ -1.99
PHGDH-201ENST00000369407 LCE4AQ5TA78 99 aa2.57□□□□□ -2
PHGDH-201ENST00000369407 KRTAP5-2Q701N4 177 aa2.57□□□□□ -2
PHGDH-201ENST00000369407 KRTAP5-10Q6L8G5 202 aa2.53□□□□□ -2
PHGDH-201ENST00000369407 KRTAP20-1Q3LI63 56 aa2.49□□□□□ -2.01
PHGDH-201ENST00000369407 KRTAP5-3Q6L8H2 238 aa2.48□□□□□ -2.01
PHGDH-201ENST00000369407 KRTAP5-1Q6L8H4 278 aa2.39□□□□□ -2.03
PHGDH-201ENST00000369407 KRTAP4-2Q9BYR5 136 aa2.33□□□□□ -2.04
PHGDH-201ENST00000369407 KRTAP4-4Q9BYR3 166 aa2.26□□□□□ -2.05
PHGDH-201ENST00000369407 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
PHGDH-201ENST00000369407 LCE1CQ5T751 118 aa2.24□□□□□ -2.05
PHGDH-201ENST00000369407 AHNAK2Q8IVF2 5795 aa2.23□□□□□ -2.05
PHGDH-201ENST00000369407 MUC5BQ9HC84 5762 aaPredicted RBP2.23□□□□□ -2.05
PHGDH-201ENST00000369407 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
PHGDH-201ENST00000369407 KRTAP5-8O75690 187 aa2.12□□□□□ -2.07
PHGDH-201ENST00000369407 KRTAP4-12Q9BQ66 201 aa2.1□□□□□ -2.07
PHGDH-201ENST00000369407 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.08□□□□□ -2.08
PHGDH-201ENST00000369407 KRTAP9-9Q9BYP9 154 aa2.03□□□□□ -2.08
PHGDH-201ENST00000369407 GPR98Q8WXG9 6306 aa1.98□□□□□ -2.09
PHGDH-201ENST00000369407 KRTAP5-11Q6L8G4 156 aa1.89□□□□□ -2.11
PHGDH-201ENST00000369407 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
PHGDH-201ENST00000369407 PHGR1C9JFL3 82 aa1.67□□□□□ -2.14
PHGDH-201ENST00000369407 AHNAKQ09666 5890 aaKnown RBP1.65□□□□□ -2.15
PHGDH-201ENST00000369407 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 10.9 ms