RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 UQCR11O14957 56 aa6.75□□□□□ -1.33
CKS1B-203ENST00000368439 MT1MQ8N339 61 aa6.72□□□□□ -1.33
CKS1B-203ENST00000368439 PP632Q6XCG6 107 aa6.71□□□□□ -1.34
CKS1B-203ENST00000368439 KRTAP4-7Q9BYR0 210 aa6.71□□□□□ -1.34
CKS1B-203ENST00000368439 LCE1DQ5T752 114 aa6.69□□□□□ -1.34
CKS1B-203ENST00000368439 MIR22HGQ0VDD5 57 aa6.6□□□□□ -1.35
CKS1B-203ENST00000368439 KRTAP4-9Q9BYQ8 210 aa6.6□□□□□ -1.35
CKS1B-203ENST00000368439 KRTAP4-3Q9BYR4 195 aa6.58□□□□□ -1.36
CKS1B-203ENST00000368439 H3BS24 57 aa6.56□□□□□ -1.36
CKS1B-203ENST00000368439 KRTAP12-3P60328 96 aa6.53□□□□□ -1.36
CKS1B-203ENST00000368439 Q1T7F1 81 aa6.52□□□□□ -1.37
CKS1B-203ENST00000368439 PSPHP1O15172 72 aa6.5□□□□□ -1.37
CKS1B-203ENST00000368439 V9GYY9 64 aa6.5□□□□□ -1.37
CKS1B-203ENST00000368439 KRTAP25-1Q3LHN0 102 aa6.46□□□□□ -1.38
CKS1B-203ENST00000368439 LCE4AQ5TA78 99 aa6.46□□□□□ -1.38
CKS1B-203ENST00000368439 KRTAP4-2Q9BYR5 136 aa6.44□□□□□ -1.38
CKS1B-203ENST00000368439 GPR98Q8WXG9 6306 aa6.43□□□□□ -1.38
CKS1B-203ENST00000368439 KRTAP5-4Q6L8H1 288 aa6.41□□□□□ -1.38
CKS1B-203ENST00000368439 HMCN1Q96RW7 5635 aa6.41□□□□□ -1.38
CKS1B-203ENST00000368439 K7ERS5 55 aa6.4□□□□□ -1.38
CKS1B-203ENST00000368439 MT4P47944 62 aa6.37□□□□□ -1.39
CKS1B-203ENST00000368439 KRTAP19-4Q3LI73 84 aa6.34□□□□□ -1.39
CKS1B-203ENST00000368439 KRTAP4-11Q9BYQ6 195 aa6.26□□□□□ -1.41
CKS1B-203ENST00000368439 KRTAP23-1A1A580 65 aa6.25□□□□□ -1.41
CKS1B-203ENST00000368439 A6NED7 52 aa6.25□□□□□ -1.41
CKS1B-203ENST00000368439 RPS28P62857 69 aaKnown RBP6.19□□□□□ -1.42
CKS1B-203ENST00000368439 KRTAP5-5Q701N2 237 aaPredicted RBP6.19□□□□□ -1.42
CKS1B-203ENST00000368439 SVIPQ8NHG7 77 aa6.18□□□□□ -1.42
CKS1B-203ENST00000368439 AHNAK2Q8IVF2 5795 aa6.18□□□□□ -1.42
CKS1B-203ENST00000368439 KRTAP15-1Q3LI76 137 aa6.12□□□□□ -1.43
CKS1B-203ENST00000368439 CDC42SE1Q9NRR8 79 aa6.11□□□□□ -1.43
CKS1B-203ENST00000368439 PCP4P48539 62 aa6.1□□□□□ -1.43
CKS1B-203ENST00000368439 ROMO1P60602 79 aa6.04□□□□□ -1.44
CKS1B-203ENST00000368439 LCE3CQ5T5A8 94 aa6.04□□□□□ -1.44
CKS1B-203ENST00000368439 KRTAP20-2Q3LI61 65 aa6.02□□□□□ -1.45
CKS1B-203ENST00000368439 SPRR5A0A1B0GTR4 108 aa5.99□□□□□ -1.45
CKS1B-203ENST00000368439 KRTAP5-10Q6L8G5 202 aa5.99□□□□□ -1.45
CKS1B-203ENST00000368439 SYNE1Q8NF91 8797 aaKnown RBP5.97□□□□□ -1.45
CKS1B-203ENST00000368439 KRTAP12-4P60329 112 aa5.93□□□□□ -1.46
CKS1B-203ENST00000368439 KRTAP5-3Q6L8H2 238 aa5.87□□□□□ -1.47
CKS1B-203ENST00000368439 KRTAP9-6A8MVA2 160 aa5.75□□□□□ -1.49
CKS1B-203ENST00000368439 MT1AP04731 61 aa5.75□□□□□ -1.49
CKS1B-203ENST00000368439 KRTAP5-7Q6L8G8 165 aa5.75□□□□□ -1.49
CKS1B-203ENST00000368439 KRTAP6-1Q3LI64 71 aa5.72□□□□□ -1.49
CKS1B-203ENST00000368439 KRTAP5-2Q701N4 177 aa5.63□□□□□ -1.51
CKS1B-203ENST00000368439 KRTAP6-2Q3LI66 62 aa5.44□□□□□ -1.54
CKS1B-203ENST00000368439 BRK1Q8WUW1 75 aa5.38□□□□□ -1.55
CKS1B-203ENST00000368439 KRTAP5-8O75690 187 aa5.31□□□□□ -1.56
CKS1B-203ENST00000368439 OBSCNQ5VST9 7968 aa5.26□□□□□ -1.57
CKS1B-203ENST00000368439 MT3P25713 68 aa5.23□□□□□ -1.57
CKS1B-203ENST00000368439 MUC5BQ9HC84 5762 aaPredicted RBP5.06□□□□□ -1.6
CKS1B-203ENST00000368439 AHNAKQ09666 5890 aaKnown RBP5.05□□□□□ -1.6
CKS1B-203ENST00000368439 PMAIP1Q13794 54 aa5.05□□□□□ -1.6
CKS1B-203ENST00000368439 KRTAP5-1Q6L8H4 278 aa5.04□□□□□ -1.6
CKS1B-203ENST00000368439 MUC5ACP98088 5654 aa5.03□□□□□ -1.6
CKS1B-203ENST00000368439 PRAC1Q96KF2 57 aa4.92□□□□□ -1.62
CKS1B-203ENST00000368439 LCE1EQ5T753 118 aa4.82□□□□□ -1.64
CKS1B-203ENST00000368439 PRO0628Q9UI54 55 aa4.68□□□□□ -1.66
CKS1B-203ENST00000368439 A0A0A0MQY5 61 aa4.54□□□□□ -1.68
CKS1B-203ENST00000368439 LCE1BQ5T7P3 118 aa4.49□□□□□ -1.69
CKS1B-203ENST00000368439 KTN1-AS1Q86SY8 53 aa4.48□□□□□ -1.69
CKS1B-203ENST00000368439 LCE1CQ5T751 118 aa4.47□□□□□ -1.69
CKS1B-203ENST00000368439 LCE3DQ9BYE3 92 aa4.34□□□□□ -1.71
CKS1B-203ENST00000368439 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.33□□□□□ -1.72
CKS1B-203ENST00000368439 KRTAP5-11Q6L8G4 156 aa4.22□□□□□ -1.73
CKS1B-203ENST00000368439 LCE3EQ5T5B0 92 aa4.09□□□□□ -1.75
CKS1B-203ENST00000368439 LUZP6Q538Z0 58 aa4.06□□□□□ -1.76
CKS1B-203ENST00000368439 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
CKS1B-203ENST00000368439 KRTAP21-2Q3LI59 83 aa3.79□□□□□ -1.8
CKS1B-203ENST00000368439 KRTAP4-4Q9BYR3 166 aa3.64□□□□□ -1.83
CKS1B-203ENST00000368439 PHGR1C9JFL3 82 aa3.5□□□□□ -1.85
CKS1B-203ENST00000368439 NDUFAF8A1L188 74 aa3.4□□□□□ -1.87
CKS1B-203ENST00000368439 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
CKS1B-203ENST00000368439 PRM1P04553 51 aa3.1□□□□□ -1.91
CKS1B-203ENST00000368439 KRTAP21-1Q3LI58 79 aa2.61□□□□□ -1.99
CKS1B-203ENST00000368439 INE1O15225 51 aa2.6□□□□□ -1.99
CKS1B-203ENST00000368439 MUC16Q8WXI7 14507 aa2.27□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 8.5 ms