RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 KRTAP19-7Q3SYF9 63 aa5.1□□□□□ -1.59
CD48-201ENST00000368045 KRTAP4-9Q9BYQ8 210 aa5.04□□□□□ -1.6
CD48-201ENST00000368045 KRTAP4-2Q9BYR5 136 aa5.01□□□□□ -1.61
CD48-201ENST00000368045 KRTAP9-6A8MVA2 160 aa4.99□□□□□ -1.61
CD48-201ENST00000368045 KMT2DO14686 5537 aa4.99□□□□□ -1.61
CD48-201ENST00000368045 MT1EP04732 61 aa4.98□□□□□ -1.61
CD48-201ENST00000368045 MT1LQ93083 61 aa4.97□□□□□ -1.61
CD48-201ENST00000368045 KRTAP19-6Q3LI70 58 aa4.93□□□□□ -1.62
CD48-201ENST00000368045 KRTAP2-3P0C7H8 128 aa4.91□□□□□ -1.62
CD48-201ENST00000368045 KRTAP2-4Q9BYR9 128 aa4.91□□□□□ -1.62
CD48-201ENST00000368045 KRTAP2-1Q9BYU5 128 aa4.91□□□□□ -1.62
CD48-201ENST00000368045 SSPOA2VEC9 5147 aa4.91□□□□□ -1.62
CD48-201ENST00000368045 LCE4AQ5TA78 99 aa4.88□□□□□ -1.63
CD48-201ENST00000368045 KRTAP9-7A8MTY7 169 aa4.83□□□□□ -1.64
CD48-201ENST00000368045 KRTAP4-11Q9BYQ6 195 aa4.79□□□□□ -1.64
CD48-201ENST00000368045 KRTAP5-3Q6L8H2 238 aa4.75□□□□□ -1.65
CD48-201ENST00000368045 MT1GP13640 62 aa4.66□□□□□ -1.66
CD48-201ENST00000368045 KRTAP19-3Q7Z4W3 81 aa4.66□□□□□ -1.66
CD48-201ENST00000368045 LCE5AQ5TCM9 118 aa4.65□□□□□ -1.66
CD48-201ENST00000368045 MT1MQ8N339 61 aa4.64□□□□□ -1.67
CD48-201ENST00000368045 KRTAP4-3Q9BYR4 195 aa4.58□□□□□ -1.68
CD48-201ENST00000368045 FCGBPQ9Y6R7 5405 aaPredicted RBP4.53□□□□□ -1.68
CD48-201ENST00000368045 MUC12Q9UKN1 5478 aa4.44□□□□□ -1.7
CD48-201ENST00000368045 SPRR2FQ96RM1 72 aa4.42□□□□□ -1.7
CD48-201ENST00000368045 FSIP2Q5CZC0 6907 aa4.4□□□□□ -1.7
CD48-201ENST00000368045 CRCT1Q9UGL9 99 aa4.4□□□□□ -1.71
CD48-201ENST00000368045 KRTAP12-4P60329 112 aa4.28□□□□□ -1.72
CD48-201ENST00000368045 MT1AP04731 61 aa4.24□□□□□ -1.73
CD48-201ENST00000368045 KRTAP5-9P26371 169 aa4.19□□□□□ -1.74
CD48-201ENST00000368045 KRTAP6-1Q3LI64 71 aa4.17□□□□□ -1.74
CD48-201ENST00000368045 LCE1AQ5T7P2 110 aa4.17□□□□□ -1.74
CD48-201ENST00000368045 MACF1Q9UPN3 7388 aaKnown RBP4.16□□□□□ -1.74
CD48-201ENST00000368045 KRTAP5-5Q701N2 237 aaPredicted RBP4.12□□□□□ -1.75
CD48-201ENST00000368045 DSTQ03001 7570 aaKnown RBP4.1□□□□□ -1.75
CD48-201ENST00000368045 MDN1Q9NU22 5596 aa4.06□□□□□ -1.76
CD48-201ENST00000368045 LCE3DQ9BYE3 92 aa4.05□□□□□ -1.76
CD48-201ENST00000368045 SPRR2EP22531 72 aa4.04□□□□□ -1.76
CD48-201ENST00000368045 SPRR2BP35325 72 aa4.04□□□□□ -1.76
CD48-201ENST00000368045 SPRR2AP35326 72 aa4.04□□□□□ -1.76
CD48-201ENST00000368045 LCE3EQ5T5B0 92 aa4.01□□□□□ -1.77
CD48-201ENST00000368045 SYNE2Q8WXH0 6885 aaKnown RBP3.92□□□□□ -1.78
CD48-201ENST00000368045 SYNE1Q8NF91 8797 aaKnown RBP3.9□□□□□ -1.79
CD48-201ENST00000368045 SPRR2DP22532 72 aa3.88□□□□□ -1.79
CD48-201ENST00000368045 KRTAP6-3Q3LI67 103 aa3.84□□□□□ -1.8
CD48-201ENST00000368045 MT3P25713 68 aa3.79□□□□□ -1.8
CD48-201ENST00000368045 PRM1P04553 51 aa3.77□□□□□ -1.81
CD48-201ENST00000368045 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
CD48-201ENST00000368045 KRTAP5-4Q6L8H1 288 aa3.65□□□□□ -1.83
CD48-201ENST00000368045 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.51□□□□□ -1.85
CD48-201ENST00000368045 NEBP20929 6669 aa3.45□□□□□ -1.86
CD48-201ENST00000368045 KRTAP5-2Q701N4 177 aa3.42□□□□□ -1.86
CD48-201ENST00000368045 KRTAP2-2Q9BYT5 123 aa3.4□□□□□ -1.87
CD48-201ENST00000368045 KRTAP20-2Q3LI61 65 aa3.39□□□□□ -1.87
CD48-201ENST00000368045 LCE1FQ5T754 118 aa3.39□□□□□ -1.87
CD48-201ENST00000368045 OBSCNQ5VST9 7968 aa3.36□□□□□ -1.87
CD48-201ENST00000368045 MT4P47944 62 aa3.35□□□□□ -1.87
CD48-201ENST00000368045 KRTAP20-1Q3LI63 56 aa3.25□□□□□ -1.89
CD48-201ENST00000368045 HMCN1Q96RW7 5635 aa3.2□□□□□ -1.9
CD48-201ENST00000368045 KRTAP5-11Q6L8G4 156 aa3.2□□□□□ -1.9
CD48-201ENST00000368045 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
CD48-201ENST00000368045 MUC5ACP98088 5654 aa3.12□□□□□ -1.91
CD48-201ENST00000368045 KRTAP5-1Q6L8H4 278 aa2.97□□□□□ -1.93
CD48-201ENST00000368045 LCE1BQ5T7P3 118 aa2.96□□□□□ -1.94
CD48-201ENST00000368045 KRTAP5-10Q6L8G5 202 aa2.95□□□□□ -1.94
CD48-201ENST00000368045 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
CD48-201ENST00000368045 KRTAP4-4Q9BYR3 166 aa2.88□□□□□ -1.95
CD48-201ENST00000368045 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
CD48-201ENST00000368045 KRTAP21-2Q3LI59 83 aa2.72□□□□□ -1.97
CD48-201ENST00000368045 KRTAP5-7Q6L8G8 165 aa2.72□□□□□ -1.97
CD48-201ENST00000368045 GPR98Q8WXG9 6306 aa2.69□□□□□ -1.98
CD48-201ENST00000368045 AHNAK2Q8IVF2 5795 aa2.58□□□□□ -2
CD48-201ENST00000368045 KRTAP21-1Q3LI58 79 aa2.43□□□□□ -2.02
CD48-201ENST00000368045 MUC5BQ9HC84 5762 aaPredicted RBP2.35□□□□□ -2.03
CD48-201ENST00000368045 PHGR1C9JFL3 82 aa2.17□□□□□ -2.06
CD48-201ENST00000368045 MUC19Q7Z5P9 8384 aa2.08□□□□□ -2.08
CD48-201ENST00000368045 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
CD48-201ENST00000368045 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 4.6 ms