RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 PCP4L1A6NKN8 68 aa4.69□□□□□ -1.66
VPS29-201ENST00000360579 SVIPQ8NHG7 77 aa4.68□□□□□ -1.66
VPS29-201ENST00000360579 C10orf95Q9H7T3 257 aa4.68□□□□□ -1.66
VPS29-201ENST00000360579 SMIM20Q8N5G0 67 aa4.66□□□□□ -1.66
VPS29-201ENST00000360579 SEC61GP60059 68 aa4.64□□□□□ -1.67
VPS29-201ENST00000360579 LCE3AQ5TA76 89 aa4.63□□□□□ -1.67
VPS29-201ENST00000360579 SPATA8Q6RVD6 105 aa4.63□□□□□ -1.67
VPS29-201ENST00000360579 SPANXA2-OT1Q8N9U9 137 aa4.63□□□□□ -1.67
VPS29-201ENST00000360579 SERP1Q9Y6X1 66 aa4.63□□□□□ -1.67
VPS29-201ENST00000360579 KRTAP12-1P59990 96 aa4.62□□□□□ -1.67
VPS29-201ENST00000360579 J3QR89 54 aa4.61□□□□□ -1.67
VPS29-201ENST00000360579 KRTAP12-4P60329 112 aa4.61□□□□□ -1.67
VPS29-201ENST00000360579 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
VPS29-201ENST00000360579 SYNE1Q8NF91 8797 aaKnown RBP4.58□□□□□ -1.68
VPS29-201ENST00000360579 A0A1B0GU33 70 aa4.57□□□□□ -1.68
VPS29-201ENST00000360579 TNP1P09430 55 aa4.57□□□□□ -1.68
VPS29-201ENST00000360579 SNURFQ9Y675 71 aa4.57□□□□□ -1.68
VPS29-201ENST00000360579 KRTAP4-4Q9BYR3 166 aa4.54□□□□□ -1.68
VPS29-201ENST00000360579 A0A0A0MQY5 61 aa4.51□□□□□ -1.69
VPS29-201ENST00000360579 PCP4P48539 62 aa4.5□□□□□ -1.69
VPS29-201ENST00000360579 COA5Q86WW8 74 aa4.5□□□□□ -1.69
VPS29-201ENST00000360579 AHNAKQ09666 5890 aaKnown RBP4.49□□□□□ -1.69
VPS29-201ENST00000360579 KRTAP12-3P60328 96 aa4.48□□□□□ -1.69
VPS29-201ENST00000360579 SMIM26A0A096LP01 95 aa4.47□□□□□ -1.69
VPS29-201ENST00000360579 LCE1FQ5T754 118 aa4.44□□□□□ -1.7
VPS29-201ENST00000360579 MUC5ACP98088 5654 aa4.41□□□□□ -1.7
VPS29-201ENST00000360579 MUC5BQ9HC84 5762 aaPredicted RBP4.41□□□□□ -1.7
VPS29-201ENST00000360579 A0A1B0GV90 55 aa4.4□□□□□ -1.71
VPS29-201ENST00000360579 KRTAP9-6A8MVA2 160 aa4.39□□□□□ -1.71
VPS29-201ENST00000360579 A8MU10 97 aa4.36□□□□□ -1.71
VPS29-201ENST00000360579 SERP2Q8N6R1 65 aa4.32□□□□□ -1.72
VPS29-201ENST00000360579 A0A1B0GU69 56 aa4.3□□□□□ -1.72
VPS29-201ENST00000360579 KRTAP5-2Q701N4 177 aa4.28□□□□□ -1.72
VPS29-201ENST00000360579 KRTAP5-8O75690 187 aa4.26□□□□□ -1.73
VPS29-201ENST00000360579 K7ERU9 68 aa4.21□□□□□ -1.74
VPS29-201ENST00000360579 OBSCNQ5VST9 7968 aa4.2□□□□□ -1.74
VPS29-201ENST00000360579 LCE3CQ5T5A8 94 aa4.16□□□□□ -1.74
VPS29-201ENST00000360579 MT1AP04731 61 aa4.15□□□□□ -1.75
VPS29-201ENST00000360579 KRTAP6-1Q3LI64 71 aa4.13□□□□□ -1.75
VPS29-201ENST00000360579 KRTAP25-1Q3LHN0 102 aa4.1□□□□□ -1.75
VPS29-201ENST00000360579 H7BZZ5 65 aa4.09□□□□□ -1.75
VPS29-201ENST00000360579 PRR15LQ9BU68 103 aa4.09□□□□□ -1.75
VPS29-201ENST00000360579 COX7CP15954 63 aa4.05□□□□□ -1.76
VPS29-201ENST00000360579 KRTAP6-2Q3LI66 62 aa4.04□□□□□ -1.76
VPS29-201ENST00000360579 UQCR11O14957 56 aa3.92□□□□□ -1.78
VPS29-201ENST00000360579 LINC01558Q9Y6Z2 57 aa3.89□□□□□ -1.79
VPS29-201ENST00000360579 NDUFAF8A1L188 74 aa3.83□□□□□ -1.8
VPS29-201ENST00000360579 K7ERS5 55 aa3.83□□□□□ -1.8
VPS29-201ENST00000360579 LCE3EQ5T5B0 92 aa3.79□□□□□ -1.8
VPS29-201ENST00000360579 MIR22HGQ0VDD5 57 aa3.77□□□□□ -1.81
VPS29-201ENST00000360579 ATP5EP56381 51 aaPredicted RBP3.76□□□□□ -1.81
VPS29-201ENST00000360579 PRAC1Q96KF2 57 aa3.68□□□□□ -1.82
VPS29-201ENST00000360579 ANAPC13Q9BS18 74 aa3.67□□□□□ -1.82
VPS29-201ENST00000360579 RPS28P62857 69 aaKnown RBP3.65□□□□□ -1.83
VPS29-201ENST00000360579 CCDC179H3BU77 68 aa3.58□□□□□ -1.84
VPS29-201ENST00000360579 CDC42SE1Q9NRR8 79 aa3.55□□□□□ -1.84
VPS29-201ENST00000360579 Q1T7F1 81 aa3.49□□□□□ -1.85
VPS29-201ENST00000360579 TMEM258P61165 79 aa3.47□□□□□ -1.85
VPS29-201ENST00000360579 ROMO1P60602 79 aa3.45□□□□□ -1.86
VPS29-201ENST00000360579 PSPHP1O15172 72 aa3.43□□□□□ -1.86
VPS29-201ENST00000360579 LCE1BQ5T7P3 118 aa3.42□□□□□ -1.86
VPS29-201ENST00000360579 V9GYY9 64 aa3.42□□□□□ -1.86
VPS29-201ENST00000360579 LCE1CQ5T751 118 aa3.37□□□□□ -1.87
VPS29-201ENST00000360579 A6NED7 52 aa3.32□□□□□ -1.88
VPS29-201ENST00000360579 PHGR1C9JFL3 82 aa3□□□□□ -1.93
VPS29-201ENST00000360579 LCE3DQ9BYE3 92 aa2.99□□□□□ -1.93
VPS29-201ENST00000360579 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
VPS29-201ENST00000360579 KRTAP21-2Q3LI59 83 aa2.73□□□□□ -1.97
VPS29-201ENST00000360579 BRK1Q8WUW1 75 aa2.35□□□□□ -2.03
VPS29-201ENST00000360579 KRTAP21-1Q3LI58 79 aa2.3□□□□□ -2.04
VPS29-201ENST00000360579 PRO0628Q9UI54 55 aa2.15□□□□□ -2.07
VPS29-201ENST00000360579 PMAIP1Q13794 54 aa2.14□□□□□ -2.07
VPS29-201ENST00000360579 LUZP6Q538Z0 58 aa2.07□□□□□ -2.08
VPS29-201ENST00000360579 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.11
VPS29-201ENST00000360579 KTN1-AS1Q86SY8 53 aa1.72□□□□□ -2.13
VPS29-201ENST00000360579 PRM1P04553 51 aa1.71□□□□□ -2.14
VPS29-201ENST00000360579 INE1O15225 51 aa1.29□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 97.7 ms