RNA–Protein interactions for RNA: ENST00000352993.7

BRCA1-201, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 3,668 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-201ENST00000352993 KRTAP9-3Q9BYQ3 159 aa2.78□□□□□ -1.96
BRCA1-201ENST00000352993 KRTAP6-3Q3LI67 103 aa2.77□□□□□ -1.97
BRCA1-201ENST00000352993 FCGBPQ9Y6R7 5405 aaPredicted RBP2.75□□□□□ -1.97
BRCA1-201ENST00000352993 KRTAP20-1Q3LI63 56 aa2.73□□□□□ -1.97
BRCA1-201ENST00000352993 KRTAP9-6A8MVA2 160 aa2.72□□□□□ -1.97
BRCA1-201ENST00000352993 KRTAP4-7Q9BYR0 210 aa2.7□□□□□ -1.98
BRCA1-201ENST00000352993 KMT2DO14686 5537 aa2.68□□□□□ -1.98
BRCA1-201ENST00000352993 LCE1DQ5T752 114 aa2.68□□□□□ -1.98
BRCA1-201ENST00000352993 LCE4AQ5TA78 99 aa2.66□□□□□ -1.98
BRCA1-201ENST00000352993 FSIP2Q5CZC0 6907 aa2.65□□□□□ -1.98
BRCA1-201ENST00000352993 KRTAP2-3P0C7H8 128 aa2.65□□□□□ -1.99
BRCA1-201ENST00000352993 KRTAP2-4Q9BYR9 128 aa2.65□□□□□ -1.99
BRCA1-201ENST00000352993 KRTAP2-1Q9BYU5 128 aa2.65□□□□□ -1.99
BRCA1-201ENST00000352993 KRTAP5-9P26371 169 aa2.63□□□□□ -1.99
BRCA1-201ENST00000352993 KRTAP4-9Q9BYQ8 210 aa2.63□□□□□ -1.99
BRCA1-201ENST00000352993 NEBP20929 6669 aa2.62□□□□□ -1.99
BRCA1-201ENST00000352993 KRTAP4-2Q9BYR5 136 aa2.61□□□□□ -1.99
BRCA1-201ENST00000352993 MACF1Q9UPN3 7388 aaKnown RBP2.58□□□□□ -2
BRCA1-201ENST00000352993 MUC5BQ9HC84 5762 aaPredicted RBP2.56□□□□□ -2
BRCA1-201ENST00000352993 KRTAP12-4P60329 112 aa2.55□□□□□ -2
BRCA1-201ENST00000352993 KRTAP19-7Q3SYF9 63 aa2.55□□□□□ -2
BRCA1-201ENST00000352993 KRTAP4-11Q9BYQ6 195 aa2.54□□□□□ -2
BRCA1-201ENST00000352993 MT1LQ93083 61 aa2.51□□□□□ -2.01
BRCA1-201ENST00000352993 SYNE2Q8WXH0 6885 aaKnown RBP2.5□□□□□ -2.01
BRCA1-201ENST00000352993 KRTAP5-7Q6L8G8 165 aa2.49□□□□□ -2.01
BRCA1-201ENST00000352993 GPR98Q8WXG9 6306 aa2.48□□□□□ -2.01
BRCA1-201ENST00000352993 MT1EP04732 61 aa2.47□□□□□ -2.01
BRCA1-201ENST00000352993 MT1GP13640 62 aa2.47□□□□□ -2.01
BRCA1-201ENST00000352993 LCE5AQ5TCM9 118 aa2.47□□□□□ -2.01
BRCA1-201ENST00000352993 KRTAP4-3Q9BYR4 195 aa2.46□□□□□ -2.02
BRCA1-201ENST00000352993 KRTAP19-4Q3LI73 84 aa2.43□□□□□ -2.02
BRCA1-201ENST00000352993 KRTAP2-2Q9BYT5 123 aa2.42□□□□□ -2.02
BRCA1-201ENST00000352993 MUC12Q9UKN1 5478 aa2.42□□□□□ -2.02
BRCA1-201ENST00000352993 OBSCNQ5VST9 7968 aa2.41□□□□□ -2.02
BRCA1-201ENST00000352993 AHNAKQ09666 5890 aaKnown RBP2.4□□□□□ -2.02
BRCA1-201ENST00000352993 SYNE1Q8NF91 8797 aaKnown RBP2.38□□□□□ -2.03
BRCA1-201ENST00000352993 DSTQ03001 7570 aaKnown RBP2.37□□□□□ -2.03
BRCA1-201ENST00000352993 LCE1AQ5T7P2 110 aa2.34□□□□□ -2.03
BRCA1-201ENST00000352993 KRTAP5-3Q6L8H2 238 aa2.32□□□□□ -2.04
BRCA1-201ENST00000352993 MT1MQ8N339 61 aa2.3□□□□□ -2.04
BRCA1-201ENST00000352993 MDN1Q9NU22 5596 aa2.3□□□□□ -2.04
BRCA1-201ENST00000352993 KRTAP5-10Q6L8G5 202 aa2.29□□□□□ -2.04
BRCA1-201ENST00000352993 PRM1P04553 51 aa2.29□□□□□ -2.04
BRCA1-201ENST00000352993 KRTAP19-3Q7Z4W3 81 aa2.27□□□□□ -2.05
BRCA1-201ENST00000352993 LCE3DQ9BYE3 92 aa2.26□□□□□ -2.05
BRCA1-201ENST00000352993 LCE3EQ5T5B0 92 aa2.24□□□□□ -2.05
BRCA1-201ENST00000352993 SPRR2EP22531 72 aa2.21□□□□□ -2.06
BRCA1-201ENST00000352993 SPRR2BP35325 72 aa2.21□□□□□ -2.06
BRCA1-201ENST00000352993 SPRR2AP35326 72 aa2.21□□□□□ -2.06
BRCA1-201ENST00000352993 AHNAK2Q8IVF2 5795 aa2.2□□□□□ -2.06
BRCA1-201ENST00000352993 SPRR2FQ96RM1 72 aa2.18□□□□□ -2.06
BRCA1-201ENST00000352993 MT1AP04731 61 aa2.17□□□□□ -2.06
BRCA1-201ENST00000352993 KRTAP6-1Q3LI64 71 aa2.16□□□□□ -2.06
BRCA1-201ENST00000352993 KRTAP5-5Q701N2 237 aaPredicted RBP2.16□□□□□ -2.06
BRCA1-201ENST00000352993 SPRR2DP22532 72 aa2.15□□□□□ -2.07
BRCA1-201ENST00000352993 KRTAP5-4Q6L8H1 288 aa2.13□□□□□ -2.07
BRCA1-201ENST00000352993 KRTAP6-2Q3LI66 62 aa2.11□□□□□ -2.07
BRCA1-201ENST00000352993 HMCN1Q96RW7 5635 aa2.04□□□□□ -2.08
BRCA1-201ENST00000352993 LCE1EQ5T753 118 aa1.92□□□□□ -2.1
BRCA1-201ENST00000352993 MT3P25713 68 aa1.9□□□□□ -2.1
BRCA1-201ENST00000352993 MUC5ACP98088 5654 aa1.9□□□□□ -2.11
BRCA1-201ENST00000352993 MUC19Q7Z5P9 8384 aa1.87□□□□□ -2.11
BRCA1-201ENST00000352993 KRTAP5-2Q701N4 177 aa1.87□□□□□ -2.11
BRCA1-201ENST00000352993 KRTAP20-2Q3LI61 65 aa1.86□□□□□ -2.11
BRCA1-201ENST00000352993 MT4P47944 62 aa1.77□□□□□ -2.13
BRCA1-201ENST00000352993 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.77□□□□□ -2.13
BRCA1-201ENST00000352993 KRTAP5-11Q6L8G4 156 aa1.75□□□□□ -2.13
BRCA1-201ENST00000352993 KRTAP5-8O75690 187 aa1.74□□□□□ -2.13
BRCA1-201ENST00000352993 LCE1BQ5T7P3 118 aa1.63□□□□□ -2.15
BRCA1-201ENST00000352993 KRTAP5-1Q6L8H4 278 aa1.62□□□□□ -2.15
BRCA1-201ENST00000352993 LCE1FQ5T754 118 aa1.49□□□□□ -2.17
BRCA1-201ENST00000352993 KRTAP4-4Q9BYR3 166 aa1.47□□□□□ -2.17
BRCA1-201ENST00000352993 LCE1CQ5T751 118 aa1.41□□□□□ -2.18
BRCA1-201ENST00000352993 KRTAP21-1Q3LI58 79 aa1.36□□□□□ -2.19
BRCA1-201ENST00000352993 KRTAP21-2Q3LI59 83 aa1.33□□□□□ -2.2
BRCA1-201ENST00000352993 PHGR1C9JFL3 82 aa1.14□□□□□ -2.23
BRCA1-201ENST00000352993 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 61.6 ms