RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 MT1BP07438 61 aa2.59□□□□□ -1.99
VPS39-202ENST00000348544 FSIP2Q5CZC0 6907 aa2.59□□□□□ -2
VPS39-202ENST00000348544 KRTAP9-8Q9BYQ0 159 aa2.58□□□□□ -2
VPS39-202ENST00000348544 KRTAP10-7P60409 375 aaPredicted RBP2.57□□□□□ -2
VPS39-202ENST00000348544 LCE1AQ5T7P2 110 aa2.56□□□□□ -2
VPS39-202ENST00000348544 LCE3CQ5T5A8 94 aa2.5□□□□□ -2.01
VPS39-202ENST00000348544 KRTAP9-6A8MVA2 160 aa2.49□□□□□ -2.01
VPS39-202ENST00000348544 KRTAP19-5Q3LI72 72 aa2.49□□□□□ -2.01
VPS39-202ENST00000348544 KRTAP5-3Q6L8H2 238 aa2.45□□□□□ -2.02
VPS39-202ENST00000348544 KRTAP2-3P0C7H8 128 aa2.43□□□□□ -2.02
VPS39-202ENST00000348544 KRTAP2-4Q9BYR9 128 aa2.43□□□□□ -2.02
VPS39-202ENST00000348544 KRTAP2-1Q9BYU5 128 aa2.43□□□□□ -2.02
VPS39-202ENST00000348544 KMT2DO14686 5537 aa2.41□□□□□ -2.02
VPS39-202ENST00000348544 KRTAP2-2Q9BYT5 123 aa2.35□□□□□ -2.03
VPS39-202ENST00000348544 KRTAP19-7Q3SYF9 63 aa2.34□□□□□ -2.03
VPS39-202ENST00000348544 USH2AO75445 5202 aa2.34□□□□□ -2.04
VPS39-202ENST00000348544 MT1LQ93083 61 aa2.27□□□□□ -2.05
VPS39-202ENST00000348544 MT3P25713 68 aa2.26□□□□□ -2.05
VPS39-202ENST00000348544 MT1EP04732 61 aa2.24□□□□□ -2.05
VPS39-202ENST00000348544 SSPOA2VEC9 5147 aa2.19□□□□□ -2.06
VPS39-202ENST00000348544 KRTAP12-4P60329 112 aa2.18□□□□□ -2.06
VPS39-202ENST00000348544 KRTAP4-3Q9BYR4 195 aa2.18□□□□□ -2.06
VPS39-202ENST00000348544 SYNE2Q8WXH0 6885 aaKnown RBP2.18□□□□□ -2.06
VPS39-202ENST00000348544 LCE1FQ5T754 118 aa2.17□□□□□ -2.06
VPS39-202ENST00000348544 MT1GP13640 62 aa2.15□□□□□ -2.07
VPS39-202ENST00000348544 CRCT1Q9UGL9 99 aa2.14□□□□□ -2.07
VPS39-202ENST00000348544 FCGBPQ9Y6R7 5405 aaPredicted RBP2.11□□□□□ -2.07
VPS39-202ENST00000348544 MACF1Q9UPN3 7388 aaKnown RBP2.1□□□□□ -2.07
VPS39-202ENST00000348544 MT1MQ8N339 61 aa2.08□□□□□ -2.08
VPS39-202ENST00000348544 MUC12Q9UKN1 5478 aa2.05□□□□□ -2.08
VPS39-202ENST00000348544 KRTAP19-3Q7Z4W3 81 aa2.04□□□□□ -2.08
VPS39-202ENST00000348544 LCE1EQ5T753 118 aa2.03□□□□□ -2.09
VPS39-202ENST00000348544 KRTAP19-6Q3LI70 58 aa2.02□□□□□ -2.09
VPS39-202ENST00000348544 KRTAP5-11Q6L8G4 156 aa2.01□□□□□ -2.09
VPS39-202ENST00000348544 SYNE1Q8NF91 8797 aaKnown RBP2□□□□□ -2.09
VPS39-202ENST00000348544 DSTQ03001 7570 aaKnown RBP2□□□□□ -2.09
VPS39-202ENST00000348544 KRTAP5-5Q701N2 237 aaPredicted RBP1.99□□□□□ -2.09
VPS39-202ENST00000348544 MDN1Q9NU22 5596 aa1.99□□□□□ -2.09
VPS39-202ENST00000348544 MT1AP04731 61 aa1.98□□□□□ -2.09
VPS39-202ENST00000348544 PRM1P04553 51 aa1.96□□□□□ -2.1
VPS39-202ENST00000348544 LCE3DQ9BYE3 92 aa1.95□□□□□ -2.1
VPS39-202ENST00000348544 KRTAP6-1Q3LI64 71 aa1.94□□□□□ -2.1
VPS39-202ENST00000348544 LCE3EQ5T5B0 92 aa1.94□□□□□ -2.1
VPS39-202ENST00000348544 KRTAP6-3Q3LI67 103 aa1.92□□□□□ -2.1
VPS39-202ENST00000348544 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.88□□□□□ -2.11
VPS39-202ENST00000348544 SPRR2FQ96RM1 72 aa1.87□□□□□ -2.11
VPS39-202ENST00000348544 KRTAP6-2Q3LI66 62 aa1.85□□□□□ -2.11
VPS39-202ENST00000348544 NEBP20929 6669 aa1.85□□□□□ -2.11
VPS39-202ENST00000348544 KRTAP5-9P26371 169 aa1.75□□□□□ -2.13
VPS39-202ENST00000348544 OBSCNQ5VST9 7968 aa1.72□□□□□ -2.13
VPS39-202ENST00000348544 KRTAP20-1Q3LI63 56 aa1.71□□□□□ -2.14
VPS39-202ENST00000348544 HMCN1Q96RW7 5635 aa1.68□□□□□ -2.14
VPS39-202ENST00000348544 SPRR2EP22531 72 aa1.66□□□□□ -2.14
VPS39-202ENST00000348544 SPRR2BP35325 72 aa1.66□□□□□ -2.14
VPS39-202ENST00000348544 SPRR2AP35326 72 aa1.66□□□□□ -2.14
VPS39-202ENST00000348544 KRTAP5-1Q6L8H4 278 aa1.65□□□□□ -2.15
VPS39-202ENST00000348544 GPR98Q8WXG9 6306 aa1.64□□□□□ -2.15
VPS39-202ENST00000348544 SPRR2DP22532 72 aa1.59□□□□□ -2.15
VPS39-202ENST00000348544 KRTAP4-4Q9BYR3 166 aa1.57□□□□□ -2.16
VPS39-202ENST00000348544 KRTAP5-4Q6L8H1 288 aa1.54□□□□□ -2.16
VPS39-202ENST00000348544 AHNAK2Q8IVF2 5795 aa1.48□□□□□ -2.17
VPS39-202ENST00000348544 MUC5ACP98088 5654 aa1.48□□□□□ -2.17
VPS39-202ENST00000348544 MT4P47944 62 aa1.47□□□□□ -2.17
VPS39-202ENST00000348544 KRTAP5-2Q701N4 177 aa1.43□□□□□ -2.18
VPS39-202ENST00000348544 KRTAP5-10Q6L8G5 202 aa1.43□□□□□ -2.18
VPS39-202ENST00000348544 KRTAP20-2Q3LI61 65 aa1.4□□□□□ -2.19
VPS39-202ENST00000348544 LCE1CQ5T751 118 aa1.35□□□□□ -2.19
VPS39-202ENST00000348544 LCE1BQ5T7P3 118 aa1.35□□□□□ -2.19
VPS39-202ENST00000348544 AHNAKQ09666 5890 aaKnown RBP1.33□□□□□ -2.2
VPS39-202ENST00000348544 MUC5BQ9HC84 5762 aaPredicted RBP1.32□□□□□ -2.2
VPS39-202ENST00000348544 MUC19Q7Z5P9 8384 aa1.28□□□□□ -2.2
VPS39-202ENST00000348544 KRTAP5-7Q6L8G8 165 aa1.26□□□□□ -2.21
VPS39-202ENST00000348544 KRTAP21-1Q3LI58 79 aa1.26□□□□□ -2.21
VPS39-202ENST00000348544 KRTAP21-2Q3LI59 83 aa1.25□□□□□ -2.21
VPS39-202ENST00000348544 KRTAP5-8O75690 187 aa1.19□□□□□ -2.22
VPS39-202ENST00000348544 PHGR1C9JFL3 82 aa0.92□□□□□ -2.26
VPS39-202ENST00000348544 MUC16Q8WXI7 14507 aa0.65□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 9.7 ms