RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 MUC12Q9UKN1 5478 aa7.52□□□□□ -1.21
TRIM28-202ENST00000341753 LOC100996750A0A140TA64 210 aa7.4□□□□□ -1.23
TRIM28-202ENST00000341753 KRTAP4-3Q9BYR4 195 aa7.36□□□□□ -1.23
TRIM28-202ENST00000341753 LCE2DQ5TA82 110 aaPredicted RBP7.29□□□□□ -1.24
TRIM28-202ENST00000341753 KRTAP19-4Q3LI73 84 aa7.29□□□□□ -1.24
TRIM28-202ENST00000341753 MT1GP13640 62 aa7.25□□□□□ -1.25
TRIM28-202ENST00000341753 CRCT1Q9UGL9 99 aa7.23□□□□□ -1.25
TRIM28-202ENST00000341753 DSTQ03001 7570 aaKnown RBP7.18□□□□□ -1.26
TRIM28-202ENST00000341753 MACF1Q9UPN3 7388 aaKnown RBP7.13□□□□□ -1.27
TRIM28-202ENST00000341753 KRTAP19-3Q7Z4W3 81 aa7.08□□□□□ -1.28
TRIM28-202ENST00000341753 MT1MQ8N339 61 aa7.08□□□□□ -1.28
TRIM28-202ENST00000341753 KRTAP12-4P60329 112 aa7.06□□□□□ -1.28
TRIM28-202ENST00000341753 SPRR2FQ96RM1 72 aa7.03□□□□□ -1.28
TRIM28-202ENST00000341753 SYNE2Q8WXH0 6885 aaKnown RBP6.99□□□□□ -1.29
TRIM28-202ENST00000341753 MDN1Q9NU22 5596 aa6.91□□□□□ -1.3
TRIM28-202ENST00000341753 LCE5AQ5TCM9 118 aa6.85□□□□□ -1.31
TRIM28-202ENST00000341753 LCE3BQ5TA77 95 aa6.82□□□□□ -1.32
TRIM28-202ENST00000341753 KRTAP4-9Q9BYQ8 210 aa6.82□□□□□ -1.32
TRIM28-202ENST00000341753 KRTAP9-2Q9BYQ4 174 aa6.75□□□□□ -1.33
TRIM28-202ENST00000341753 SYNE1Q8NF91 8797 aaKnown RBP6.71□□□□□ -1.34
TRIM28-202ENST00000341753 LCE1AQ5T7P2 110 aa6.52□□□□□ -1.37
TRIM28-202ENST00000341753 KRTAP6-1Q3LI64 71 aa6.52□□□□□ -1.37
TRIM28-202ENST00000341753 KRTAP5-9P26371 169 aa6.43□□□□□ -1.38
TRIM28-202ENST00000341753 MT1AP04731 61 aa6.42□□□□□ -1.38
TRIM28-202ENST00000341753 SPRR2EP22531 72 aa6.42□□□□□ -1.38
TRIM28-202ENST00000341753 SPRR2BP35325 72 aa6.42□□□□□ -1.38
TRIM28-202ENST00000341753 SPRR2AP35326 72 aa6.42□□□□□ -1.38
TRIM28-202ENST00000341753 KRTAP9-7A8MTY7 169 aa6.41□□□□□ -1.38
TRIM28-202ENST00000341753 LCE3DQ9BYE3 92 aa6.41□□□□□ -1.38
TRIM28-202ENST00000341753 LCE3EQ5T5B0 92 aa6.34□□□□□ -1.4
TRIM28-202ENST00000341753 KRTAP5-5Q701N2 237 aaPredicted RBP6.32□□□□□ -1.4
TRIM28-202ENST00000341753 PRM1P04553 51 aa6.32□□□□□ -1.4
TRIM28-202ENST00000341753 OBSCNQ5VST9 7968 aa6.2□□□□□ -1.42
TRIM28-202ENST00000341753 SPRR2DP22532 72 aa6.12□□□□□ -1.43
TRIM28-202ENST00000341753 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.06□□□□□ -1.44
TRIM28-202ENST00000341753 KRTAP9-6A0A140TA67 174 aa6.05□□□□□ -1.44
TRIM28-202ENST00000341753 KRTAP6-2Q3LI66 62 aa6.01□□□□□ -1.45
TRIM28-202ENST00000341753 KRTAP6-3Q3LI67 103 aa5.96□□□□□ -1.46
TRIM28-202ENST00000341753 KRTAP9-4Q9BYQ2 154 aa5.93□□□□□ -1.46
TRIM28-202ENST00000341753 NEBP20929 6669 aa5.71□□□□□ -1.5
TRIM28-202ENST00000341753 MT3P25713 68 aa5.64□□□□□ -1.51
TRIM28-202ENST00000341753 KRTAP2-2Q9BYT5 123 aa5.54□□□□□ -1.52
TRIM28-202ENST00000341753 KRTAP4-6Q9BYQ5 205 aa5.53□□□□□ -1.52
TRIM28-202ENST00000341753 MT4P47944 62 aa5.52□□□□□ -1.53
TRIM28-202ENST00000341753 KRTAP5-4Q6L8H1 288 aa5.52□□□□□ -1.53
TRIM28-202ENST00000341753 HMCN1Q96RW7 5635 aa5.32□□□□□ -1.56
TRIM28-202ENST00000341753 KRTAP20-2Q3LI61 65 aa5.27□□□□□ -1.57
TRIM28-202ENST00000341753 LCE4AQ5TA78 99 aa5.17□□□□□ -1.58
TRIM28-202ENST00000341753 LCE1DQ5T752 114 aa5.15□□□□□ -1.58
TRIM28-202ENST00000341753 KRTAP5-2Q701N4 177 aa5.13□□□□□ -1.59
TRIM28-202ENST00000341753 KRTAP5-3Q6L8H2 238 aa4.99□□□□□ -1.61
TRIM28-202ENST00000341753 MUC5ACP98088 5654 aa4.96□□□□□ -1.61
TRIM28-202ENST00000341753 KRTAP20-1Q3LI63 56 aa4.93□□□□□ -1.62
TRIM28-202ENST00000341753 LCE1EQ5T753 118 aa4.81□□□□□ -1.64
TRIM28-202ENST00000341753 KRTAP4-11Q9BYQ6 195 aa4.8□□□□□ -1.64
TRIM28-202ENST00000341753 LCE1BQ5T7P3 118 aa4.74□□□□□ -1.65
TRIM28-202ENST00000341753 KRTAP5-10Q6L8G5 202 aa4.63□□□□□ -1.67
TRIM28-202ENST00000341753 KRTAP4-2Q9BYR5 136 aa4.46□□□□□ -1.69
TRIM28-202ENST00000341753 KRTAP5-1Q6L8H4 278 aa4.44□□□□□ -1.7
TRIM28-202ENST00000341753 LCE1CQ5T751 118 aa4.34□□□□□ -1.71
TRIM28-202ENST00000341753 AHNAK2Q8IVF2 5795 aa4.25□□□□□ -1.73
TRIM28-202ENST00000341753 GPR98Q8WXG9 6306 aa4.23□□□□□ -1.73
TRIM28-202ENST00000341753 KRTAP5-8O75690 187 aa4.21□□□□□ -1.74
TRIM28-202ENST00000341753 KRTAP21-2Q3LI59 83 aa4.14□□□□□ -1.75
TRIM28-202ENST00000341753 MUC19Q7Z5P9 8384 aa4.03□□□□□ -1.76
TRIM28-202ENST00000341753 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.03□□□□□ -1.76
TRIM28-202ENST00000341753 MUC5BQ9HC84 5762 aaPredicted RBP4.02□□□□□ -1.77
TRIM28-202ENST00000341753 KRTAP4-4Q9BYR3 166 aa4.01□□□□□ -1.77
TRIM28-202ENST00000341753 KRTAP5-7Q6L8G8 165 aa3.98□□□□□ -1.77
TRIM28-202ENST00000341753 KRTAP21-1Q3LI58 79 aa3.9□□□□□ -1.79
TRIM28-202ENST00000341753 KRTAP4-12Q9BQ66 201 aa3.82□□□□□ -1.8
TRIM28-202ENST00000341753 KRTAP5-11Q6L8G4 156 aa3.74□□□□□ -1.81
TRIM28-202ENST00000341753 KRTAP9-9Q9BYP9 154 aa3.56□□□□□ -1.84
TRIM28-202ENST00000341753 LCE1FQ5T754 118 aa3.39□□□□□ -1.87
TRIM28-202ENST00000341753 PHGR1C9JFL3 82 aa3.27□□□□□ -1.89
TRIM28-202ENST00000341753 AHNAKQ09666 5890 aaKnown RBP3.2□□□□□ -1.9
TRIM28-202ENST00000341753 MUC16Q8WXI7 14507 aa2.18□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 13.8 ms