RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MT1BP07438 61 aa2.96□□□□□ -1.94
HMGB1-203ENST00000341423 NEBP20929 6669 aa2.95□□□□□ -1.94
HMGB1-203ENST00000341423 PKD1P98161 4303 aa2.95□□□□□ -1.94
HMGB1-203ENST00000341423 LCE4AQ5TA78 99 aa2.93□□□□□ -1.94
HMGB1-203ENST00000341423 LCE3CQ5T5A8 94 aa2.9□□□□□ -1.94
HMGB1-203ENST00000341423 HSPG2P98160 4391 aa2.89□□□□□ -1.95
HMGB1-203ENST00000341423 KRTAP4-8A0A0G2JLE6 195 aa2.89□□□□□ -1.95
HMGB1-203ENST00000341423 KRTAP4-8Q9BYQ9 185 aa2.89□□□□□ -1.95
HMGB1-203ENST00000341423 MT1XP80297 61 aa2.88□□□□□ -1.95
HMGB1-203ENST00000341423 MT3P25713 68 aa2.88□□□□□ -1.95
HMGB1-203ENST00000341423 LCE1BQ5T7P3 118 aa2.87□□□□□ -1.95
HMGB1-203ENST00000341423 RNF213Q63HN8 5207 aa2.86□□□□□ -1.95
HMGB1-203ENST00000341423 LCE1DQ5T752 114 aa2.86□□□□□ -1.95
HMGB1-203ENST00000341423 KRTAP4-9Q9BYQ8 210 aa2.86□□□□□ -1.95
HMGB1-203ENST00000341423 INE1O15225 51 aa2.85□□□□□ -1.95
HMGB1-203ENST00000341423 LCE5AQ5TCM9 118 aa2.85□□□□□ -1.95
HMGB1-203ENST00000341423 MUC2Q02817 5179 aa2.84□□□□□ -1.96
HMGB1-203ENST00000341423 KRTAP9-9Q9BYP9 154 aa2.79□□□□□ -1.96
HMGB1-203ENST00000341423 LPAP08519 4548 aa2.78□□□□□ -1.97
HMGB1-203ENST00000341423 MT1EP04732 61 aa2.72□□□□□ -1.97
HMGB1-203ENST00000341423 FAT4Q6V0I7 4981 aa2.72□□□□□ -1.97
HMGB1-203ENST00000341423 MT1MQ8N339 61 aa2.72□□□□□ -1.97
HMGB1-203ENST00000341423 LCE1CQ5T751 118 aa2.69□□□□□ -1.98
HMGB1-203ENST00000341423 LCE1EQ5T753 118 aa2.69□□□□□ -1.98
HMGB1-203ENST00000341423 LCE1FQ5T754 118 aa2.69□□□□□ -1.98
HMGB1-203ENST00000341423 MT1LQ93083 61 aa2.69□□□□□ -1.98
HMGB1-203ENST00000341423 LCE3DQ9BYE3 92 aa2.68□□□□□ -1.98
HMGB1-203ENST00000341423 KMT2DO14686 5537 aa2.67□□□□□ -1.98
HMGB1-203ENST00000341423 KRTAP19-2Q3LHN2 52 aa2.65□□□□□ -1.98
HMGB1-203ENST00000341423 DSTQ03001 7570 aaKnown RBP2.65□□□□□ -1.99
HMGB1-203ENST00000341423 HMCN2Q8NDA2 5059 aa2.62□□□□□ -1.99
HMGB1-203ENST00000341423 KRTAP4-7Q9BYR0 210 aa2.61□□□□□ -1.99
HMGB1-203ENST00000341423 LCE3EQ5T5B0 92 aa2.6□□□□□ -1.99
HMGB1-203ENST00000341423 MDN1Q9NU22 5596 aa2.6□□□□□ -1.99
HMGB1-203ENST00000341423 OBSCNQ5VST9 7968 aa2.58□□□□□ -2
HMGB1-203ENST00000341423 LOC100996750A0A140TA64 210 aa2.54□□□□□ -2
HMGB1-203ENST00000341423 MT1AP04731 61 aa2.53□□□□□ -2
HMGB1-203ENST00000341423 FLGP20930 4061 aaPredicted RBP2.52□□□□□ -2.01
HMGB1-203ENST00000341423 FCGBPQ9Y6R7 5405 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-203ENST00000341423 USH2AO75445 5202 aa2.47□□□□□ -2.01
HMGB1-203ENST00000341423 AHNAK2Q8IVF2 5795 aa2.45□□□□□ -2.02
HMGB1-203ENST00000341423 SSPOA2VEC9 5147 aa2.42□□□□□ -2.02
HMGB1-203ENST00000341423 KRTAP5-9P26371 169 aa2.42□□□□□ -2.02
HMGB1-203ENST00000341423 KRTAP4-3Q9BYR4 195 aa2.41□□□□□ -2.02
HMGB1-203ENST00000341423 MUC17Q685J3 4493 aa2.37□□□□□ -2.03
HMGB1-203ENST00000341423 KRTAP6-2Q3LI66 62 aa2.35□□□□□ -2.03
HMGB1-203ENST00000341423 KRTAP19-7Q3SYF9 63 aa2.33□□□□□ -2.04
HMGB1-203ENST00000341423 HMCN1Q96RW7 5635 aa2.31□□□□□ -2.04
HMGB1-203ENST00000341423 KRTAP9-4Q9BYQ2 154 aa2.3□□□□□ -2.04
HMGB1-203ENST00000341423 MUC19Q7Z5P9 8384 aa2.25□□□□□ -2.05
HMGB1-203ENST00000341423 KRTAP20-2Q3LI61 65 aa2.21□□□□□ -2.06
HMGB1-203ENST00000341423 KRTAP4-6Q9BYQ5 205 aa2.2□□□□□ -2.06
HMGB1-203ENST00000341423 KRTAP5-3Q6L8H2 238 aa2.19□□□□□ -2.06
HMGB1-203ENST00000341423 KRTAP4-11Q9BYQ6 195 aa2.18□□□□□ -2.06
HMGB1-203ENST00000341423 KRTAP6-1Q3LI64 71 aa2.18□□□□□ -2.06
HMGB1-203ENST00000341423 KRTAP5-4Q6L8H1 288 aa2.14□□□□□ -2.07
HMGB1-203ENST00000341423 MUC12Q9UKN1 5478 aa2.11□□□□□ -2.07
HMGB1-203ENST00000341423 KRTAP4-2Q9BYR5 136 aa2.11□□□□□ -2.07
HMGB1-203ENST00000341423 AHNAKQ09666 5890 aaKnown RBP2.09□□□□□ -2.08
HMGB1-203ENST00000341423 PRM1P04553 51 aa2.02□□□□□ -2.09
HMGB1-203ENST00000341423 KRTAP4-12Q9BQ66 201 aa2.02□□□□□ -2.09
HMGB1-203ENST00000341423 MUC5BQ9HC84 5762 aaPredicted RBP1.96□□□□□ -2.1
HMGB1-203ENST00000341423 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
HMGB1-203ENST00000341423 MUC5ACP98088 5654 aa1.91□□□□□ -2.1
HMGB1-203ENST00000341423 KRTAP5-5Q701N2 237 aaPredicted RBP1.89□□□□□ -2.11
HMGB1-203ENST00000341423 KRTAP5-8O75690 187 aa1.85□□□□□ -2.11
HMGB1-203ENST00000341423 KRTAP9-6A8MVA2 160 aa1.83□□□□□ -2.12
HMGB1-203ENST00000341423 KRTAP5-7Q6L8G8 165 aa1.77□□□□□ -2.13
HMGB1-203ENST00000341423 KRTAP4-4Q9BYR3 166 aa1.77□□□□□ -2.13
HMGB1-203ENST00000341423 KRTAP5-10Q6L8G5 202 aa1.65□□□□□ -2.15
HMGB1-203ENST00000341423 KRTAP21-1Q3LI58 79 aa1.46□□□□□ -2.17
HMGB1-203ENST00000341423 KRTAP5-2Q701N4 177 aa1.46□□□□□ -2.18
HMGB1-203ENST00000341423 KRTAP5-11Q6L8G4 156 aa1.36□□□□□ -2.19
HMGB1-203ENST00000341423 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.33□□□□□ -2.2
HMGB1-203ENST00000341423 KRTAP5-1Q6L8H4 278 aa1.3□□□□□ -2.2
HMGB1-203ENST00000341423 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
HMGB1-203ENST00000341423 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 5.5 ms