RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 HMCN1Q96RW7 5635 aa6.13□□□□□ -1.43
HDDC3-201ENST00000330334 KRTAP5-4Q6L8H1 288 aa6.11□□□□□ -1.43
HDDC3-201ENST00000330334 KRTAP4-3Q9BYR4 195 aa6.11□□□□□ -1.43
HDDC3-201ENST00000330334 MT4P47944 62 aa6.1□□□□□ -1.43
HDDC3-201ENST00000330334 KRTAP12-3P60328 96 aa6.05□□□□□ -1.44
HDDC3-201ENST00000330334 UQCR11O14957 56 aa6.03□□□□□ -1.44
HDDC3-201ENST00000330334 TMEM258P61165 79 aa5.98□□□□□ -1.45
HDDC3-201ENST00000330334 KRTAP4-6Q9BYQ5 205 aa5.95□□□□□ -1.46
HDDC3-201ENST00000330334 KRTAP4-7Q9BYR0 210 aa5.95□□□□□ -1.46
HDDC3-201ENST00000330334 KRTAP25-1Q3LHN0 102 aa5.9□□□□□ -1.46
HDDC3-201ENST00000330334 AHNAK2Q8IVF2 5795 aa5.88□□□□□ -1.47
HDDC3-201ENST00000330334 MIR22HGQ0VDD5 57 aa5.86□□□□□ -1.47
HDDC3-201ENST00000330334 KRTAP5-10Q6L8G5 202 aa5.86□□□□□ -1.47
HDDC3-201ENST00000330334 KRTAP5-5Q701N2 237 aaPredicted RBP5.83□□□□□ -1.48
HDDC3-201ENST00000330334 KRTAP19-4Q3LI73 84 aa5.82□□□□□ -1.48
HDDC3-201ENST00000330334 K7ERS5 55 aa5.79□□□□□ -1.48
HDDC3-201ENST00000330334 PCP4P48539 62 aa5.79□□□□□ -1.48
HDDC3-201ENST00000330334 SPRR5A0A1B0GTR4 108 aa5.75□□□□□ -1.49
HDDC3-201ENST00000330334 KRTAP23-1A1A580 65 aa5.74□□□□□ -1.49
HDDC3-201ENST00000330334 KRTAP20-2Q3LI61 65 aa5.74□□□□□ -1.49
HDDC3-201ENST00000330334 V9GYY9 64 aa5.73□□□□□ -1.49
HDDC3-201ENST00000330334 KRTAP12-4P60329 112 aa5.7□□□□□ -1.5
HDDC3-201ENST00000330334 KRTAP5-3Q6L8H2 238 aa5.69□□□□□ -1.5
HDDC3-201ENST00000330334 Q1T7F1 81 aa5.67□□□□□ -1.5
HDDC3-201ENST00000330334 PSPHP1O15172 72 aa5.65□□□□□ -1.5
HDDC3-201ENST00000330334 KRTAP5-7Q6L8G8 165 aa5.65□□□□□ -1.5
HDDC3-201ENST00000330334 LOC100996750A0A140TA64 210 aa5.64□□□□□ -1.51
HDDC3-201ENST00000330334 KRTAP15-1Q3LI76 137 aa5.62□□□□□ -1.51
HDDC3-201ENST00000330334 RPS28P62857 69 aaKnown RBP5.58□□□□□ -1.52
HDDC3-201ENST00000330334 LCE3CQ5T5A8 94 aa5.57□□□□□ -1.52
HDDC3-201ENST00000330334 SYNE1Q8NF91 8797 aaKnown RBP5.55□□□□□ -1.52
HDDC3-201ENST00000330334 A6NED7 52 aa5.46□□□□□ -1.54
HDDC3-201ENST00000330334 CDC42SE1Q9NRR8 79 aa5.46□□□□□ -1.54
HDDC3-201ENST00000330334 MT1AP04731 61 aa5.37□□□□□ -1.55
HDDC3-201ENST00000330334 ROMO1P60602 79 aa5.37□□□□□ -1.55
HDDC3-201ENST00000330334 KRTAP5-2Q701N4 177 aa5.33□□□□□ -1.56
HDDC3-201ENST00000330334 KRTAP6-1Q3LI64 71 aa5.32□□□□□ -1.56
HDDC3-201ENST00000330334 KRTAP4-11Q9BYQ6 195 aa5.28□□□□□ -1.56
HDDC3-201ENST00000330334 KRTAP9-6A8MVA2 160 aa5.23□□□□□ -1.57
HDDC3-201ENST00000330334 KRTAP9-4Q9BYQ2 154 aa5.22□□□□□ -1.57
HDDC3-201ENST00000330334 KRTAP6-2Q3LI66 62 aa5.11□□□□□ -1.59
HDDC3-201ENST00000330334 KRTAP5-8O75690 187 aa5.1□□□□□ -1.59
HDDC3-201ENST00000330334 H3BS24 57 aa5.07□□□□□ -1.6
HDDC3-201ENST00000330334 SVIPQ8NHG7 77 aa4.98□□□□□ -1.61
HDDC3-201ENST00000330334 OBSCNQ5VST9 7968 aa4.94□□□□□ -1.62
HDDC3-201ENST00000330334 MT3P25713 68 aa4.94□□□□□ -1.62
HDDC3-201ENST00000330334 BRK1Q8WUW1 75 aa4.94□□□□□ -1.62
HDDC3-201ENST00000330334 MUC5BQ9HC84 5762 aaPredicted RBP4.89□□□□□ -1.63
HDDC3-201ENST00000330334 MUC5ACP98088 5654 aa4.88□□□□□ -1.63
HDDC3-201ENST00000330334 KRTAP9-9Q9BYP9 154 aa4.86□□□□□ -1.63
HDDC3-201ENST00000330334 AHNAKQ09666 5890 aaKnown RBP4.85□□□□□ -1.63
HDDC3-201ENST00000330334 KRTAP5-1Q6L8H4 278 aa4.8□□□□□ -1.64
HDDC3-201ENST00000330334 PMAIP1Q13794 54 aa4.68□□□□□ -1.66
HDDC3-201ENST00000330334 PRO0628Q9UI54 55 aa4.64□□□□□ -1.67
HDDC3-201ENST00000330334 LCE1EQ5T753 118 aa4.6□□□□□ -1.67
HDDC3-201ENST00000330334 KRTAP4-12Q9BQ66 201 aa4.58□□□□□ -1.68
HDDC3-201ENST00000330334 KTN1-AS1Q86SY8 53 aa4.36□□□□□ -1.71
HDDC3-201ENST00000330334 PRAC1Q96KF2 57 aa4.31□□□□□ -1.72
HDDC3-201ENST00000330334 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
HDDC3-201ENST00000330334 LCE1CQ5T751 118 aa4.26□□□□□ -1.73
HDDC3-201ENST00000330334 LCE1BQ5T7P3 118 aa4.26□□□□□ -1.73
HDDC3-201ENST00000330334 LCE3DQ9BYE3 92 aa3.99□□□□□ -1.77
HDDC3-201ENST00000330334 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.88□□□□□ -1.79
HDDC3-201ENST00000330334 KRTAP5-11Q6L8G4 156 aa3.85□□□□□ -1.79
HDDC3-201ENST00000330334 LCE1FQ5T754 118 aa3.81□□□□□ -1.8
HDDC3-201ENST00000330334 LUZP6Q538Z0 58 aa3.77□□□□□ -1.81
HDDC3-201ENST00000330334 LCE3EQ5T5B0 92 aa3.74□□□□□ -1.81
HDDC3-201ENST00000330334 KRTAP21-2Q3LI59 83 aa3.53□□□□□ -1.84
HDDC3-201ENST00000330334 PHGR1C9JFL3 82 aa3.39□□□□□ -1.87
HDDC3-201ENST00000330334 A0A0A0MQY5 61 aa3.38□□□□□ -1.87
HDDC3-201ENST00000330334 NDUFAF8A1L188 74 aa3.26□□□□□ -1.89
HDDC3-201ENST00000330334 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
HDDC3-201ENST00000330334 MUC19Q7Z5P9 8384 aa3.05□□□□□ -1.92
HDDC3-201ENST00000330334 INE1O15225 51 aa2.78□□□□□ -1.96
HDDC3-201ENST00000330334 PRM1P04553 51 aa2.7□□□□□ -1.98
HDDC3-201ENST00000330334 KRTAP21-1Q3LI58 79 aa2.61□□□□□ -1.99
HDDC3-201ENST00000330334 MUC16Q8WXI7 14507 aa2.17□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 82.9 ms