RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 MT1EP04732 61 aa3.2□□□□□ -1.9
TMEM39A-201ENST00000319172 SPRR2DP22532 72 aa3.2□□□□□ -1.9
TMEM39A-201ENST00000319172 MT1GP13640 62 aa3.19□□□□□ -1.9
TMEM39A-201ENST00000319172 MT3P25713 68 aa3.19□□□□□ -1.9
TMEM39A-201ENST00000319172 MT1LQ93083 61 aa3.19□□□□□ -1.9
TMEM39A-201ENST00000319172 KMT2DO14686 5537 aa3.16□□□□□ -1.9
TMEM39A-201ENST00000319172 KRTAP19-7Q3SYF9 63 aa3.16□□□□□ -1.9
TMEM39A-201ENST00000319172 KRTAP19-3Q7Z4W3 81 aa3.15□□□□□ -1.91
TMEM39A-201ENST00000319172 SSPOA2VEC9 5147 aa3.1□□□□□ -1.91
TMEM39A-201ENST00000319172 KRTAP4-3Q9BYR4 195 aa3.09□□□□□ -1.91
TMEM39A-201ENST00000319172 LCE3BQ5TA77 95 aa3.08□□□□□ -1.92
TMEM39A-201ENST00000319172 KRTAP12-4P60329 112 aa3.07□□□□□ -1.92
TMEM39A-201ENST00000319172 DSTQ03001 7570 aaKnown RBP3.06□□□□□ -1.92
TMEM39A-201ENST00000319172 MT1MQ8N339 61 aa3.06□□□□□ -1.92
TMEM39A-201ENST00000319172 KRTAP9-6A0A140TA67 174 aa3.04□□□□□ -1.92
TMEM39A-201ENST00000319172 FCGBPQ9Y6R7 5405 aaPredicted RBP3.03□□□□□ -1.92
TMEM39A-201ENST00000319172 LOC100996750A0A140TA64 210 aa3.03□□□□□ -1.92
TMEM39A-201ENST00000319172 SYNE2Q8WXH0 6885 aaKnown RBP3□□□□□ -1.93
TMEM39A-201ENST00000319172 MUC12Q9UKN1 5478 aa2.98□□□□□ -1.93
TMEM39A-201ENST00000319172 MACF1Q9UPN3 7388 aaKnown RBP2.97□□□□□ -1.93
TMEM39A-201ENST00000319172 KRTAP9-6A8MVA2 160 aa2.92□□□□□ -1.94
TMEM39A-201ENST00000319172 KRTAP2-2Q9BYT5 123 aa2.91□□□□□ -1.94
TMEM39A-201ENST00000319172 MT4P47944 62 aa2.89□□□□□ -1.95
TMEM39A-201ENST00000319172 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.88□□□□□ -1.95
TMEM39A-201ENST00000319172 KRTAP9-7A8MTY7 169 aa2.88□□□□□ -1.95
TMEM39A-201ENST00000319172 LCE5AQ5TCM9 118 aa2.86□□□□□ -1.95
TMEM39A-201ENST00000319172 LCE1AQ5T7P2 110 aa2.85□□□□□ -1.95
TMEM39A-201ENST00000319172 LCE3DQ9BYE3 92 aa2.83□□□□□ -1.96
TMEM39A-201ENST00000319172 KRTAP6-3Q3LI67 103 aa2.82□□□□□ -1.96
TMEM39A-201ENST00000319172 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
TMEM39A-201ENST00000319172 MT1AP04731 61 aa2.74□□□□□ -1.97
TMEM39A-201ENST00000319172 KRTAP2-3P0C7H8 128 aa2.74□□□□□ -1.97
TMEM39A-201ENST00000319172 KRTAP2-4Q9BYR9 128 aa2.74□□□□□ -1.97
TMEM39A-201ENST00000319172 KRTAP2-1Q9BYU5 128 aa2.74□□□□□ -1.97
TMEM39A-201ENST00000319172 KRTAP20-1Q3LI63 56 aa2.73□□□□□ -1.97
TMEM39A-201ENST00000319172 KRTAP4-9Q9BYQ8 210 aa2.72□□□□□ -1.97
TMEM39A-201ENST00000319172 KRTAP6-1Q3LI64 71 aa2.71□□□□□ -1.98
TMEM39A-201ENST00000319172 MDN1Q9NU22 5596 aa2.7□□□□□ -1.98
TMEM39A-201ENST00000319172 KRTAP5-9P26371 169 aa2.69□□□□□ -1.98
TMEM39A-201ENST00000319172 LCE1DQ5T752 114 aa2.66□□□□□ -1.98
TMEM39A-201ENST00000319172 LCE1BQ5T7P3 118 aa2.65□□□□□ -1.98
TMEM39A-201ENST00000319172 KRTAP6-2Q3LI66 62 aa2.58□□□□□ -2
TMEM39A-201ENST00000319172 KRTAP9-4Q9BYQ2 154 aa2.55□□□□□ -2
TMEM39A-201ENST00000319172 NEBP20929 6669 aa2.54□□□□□ -2
TMEM39A-201ENST00000319172 KRTAP4-6Q9BYQ5 205 aa2.5□□□□□ -2.01
TMEM39A-201ENST00000319172 GPR98Q8WXG9 6306 aa2.5□□□□□ -2.01
TMEM39A-201ENST00000319172 LCE4AQ5TA78 99 aa2.48□□□□□ -2.01
TMEM39A-201ENST00000319172 PRM1P04553 51 aa2.46□□□□□ -2.02
TMEM39A-201ENST00000319172 MUC19Q7Z5P9 8384 aa2.43□□□□□ -2.02
TMEM39A-201ENST00000319172 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
TMEM39A-201ENST00000319172 KRTAP5-5Q701N2 237 aaPredicted RBP2.33□□□□□ -2.04
TMEM39A-201ENST00000319172 LCE1EQ5T753 118 aa2.33□□□□□ -2.04
TMEM39A-201ENST00000319172 KRTAP20-2Q3LI61 65 aa2.32□□□□□ -2.04
TMEM39A-201ENST00000319172 LCE1CQ5T751 118 aa2.21□□□□□ -2.05
TMEM39A-201ENST00000319172 KRTAP5-4Q6L8H1 288 aa2.18□□□□□ -2.06
TMEM39A-201ENST00000319172 KRTAP9-9Q9BYP9 154 aa2.17□□□□□ -2.06
TMEM39A-201ENST00000319172 HMCN1Q96RW7 5635 aa2.14□□□□□ -2.07
TMEM39A-201ENST00000319172 KRTAP5-3Q6L8H2 238 aa2.12□□□□□ -2.07
TMEM39A-201ENST00000319172 MUC5ACP98088 5654 aa2.09□□□□□ -2.08
TMEM39A-201ENST00000319172 KRTAP4-12Q9BQ66 201 aa2.05□□□□□ -2.08
TMEM39A-201ENST00000319172 KRTAP4-11Q9BYQ6 195 aa2.05□□□□□ -2.08
TMEM39A-201ENST00000319172 KRTAP5-2Q701N4 177 aa1.96□□□□□ -2.1
TMEM39A-201ENST00000319172 KRTAP4-2Q9BYR5 136 aa1.94□□□□□ -2.1
TMEM39A-201ENST00000319172 AHNAK2Q8IVF2 5795 aa1.93□□□□□ -2.1
TMEM39A-201ENST00000319172 KRTAP4-4Q9BYR3 166 aa1.89□□□□□ -2.11
TMEM39A-201ENST00000319172 KRTAP5-8O75690 187 aa1.82□□□□□ -2.12
TMEM39A-201ENST00000319172 KRTAP5-1Q6L8H4 278 aa1.74□□□□□ -2.13
TMEM39A-201ENST00000319172 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.7□□□□□ -2.14
TMEM39A-201ENST00000319172 KRTAP5-10Q6L8G5 202 aa1.69□□□□□ -2.14
TMEM39A-201ENST00000319172 MUC5BQ9HC84 5762 aaPredicted RBP1.67□□□□□ -2.14
TMEM39A-201ENST00000319172 AHNAKQ09666 5890 aaKnown RBP1.63□□□□□ -2.15
TMEM39A-201ENST00000319172 KRTAP21-1Q3LI58 79 aa1.58□□□□□ -2.16
TMEM39A-201ENST00000319172 KRTAP21-2Q3LI59 83 aa1.57□□□□□ -2.16
TMEM39A-201ENST00000319172 KRTAP5-11Q6L8G4 156 aa1.56□□□□□ -2.16
TMEM39A-201ENST00000319172 KRTAP5-7Q6L8G8 165 aa1.48□□□□□ -2.17
TMEM39A-201ENST00000319172 PHGR1C9JFL3 82 aa1.46□□□□□ -2.18
TMEM39A-201ENST00000319172 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 14.3 ms