RNA–Protein interactions for RNA: ENST00000318266.9

PTPRA-202, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRA, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-202ENST00000318266 KRTAP2-3P0C7H8 128 aa3.5□□□□□ -1.85
PTPRA-202ENST00000318266 KRTAP2-4Q9BYR9 128 aa3.5□□□□□ -1.85
PTPRA-202ENST00000318266 KRTAP4-8A0A0G2JLE6 195 aa3.49□□□□□ -1.85
PTPRA-202ENST00000318266 KRTAP4-8Q9BYQ9 185 aa3.49□□□□□ -1.85
PTPRA-202ENST00000318266 KRTAP5-9P26371 169 aa3.48□□□□□ -1.85
PTPRA-202ENST00000318266 KRTAP4-7Q9BYR0 210 aa3.47□□□□□ -1.85
PTPRA-202ENST00000318266 MACF1Q9UPN3 7388 aaKnown RBP3.4□□□□□ -1.87
PTPRA-202ENST00000318266 KRTAP2-2Q9BYT5 123 aa3.35□□□□□ -1.87
PTPRA-202ENST00000318266 KRTAP2-1Q9BYU5 128 aa3.35□□□□□ -1.87
PTPRA-202ENST00000318266 KRTAP19-7Q3SYF9 63 aa3.32□□□□□ -1.88
PTPRA-202ENST00000318266 SYNE2Q8WXH0 6885 aaKnown RBP3.31□□□□□ -1.88
PTPRA-202ENST00000318266 LCE1AQ5T7P2 110 aa3.24□□□□□ -1.89
PTPRA-202ENST00000318266 MT1LQ93083 61 aa3.23□□□□□ -1.89
PTPRA-202ENST00000318266 LOC100996750A0A140TA64 210 aa3.22□□□□□ -1.89
PTPRA-202ENST00000318266 SPRR2EP22531 72 aa3.19□□□□□ -1.9
PTPRA-202ENST00000318266 SPRR2BP35325 72 aa3.19□□□□□ -1.9
PTPRA-202ENST00000318266 SPRR2AP35326 72 aa3.19□□□□□ -1.9
PTPRA-202ENST00000318266 MT1EP04732 61 aa3.19□□□□□ -1.9
PTPRA-202ENST00000318266 KRTAP4-3Q9BYR4 195 aa3.19□□□□□ -1.9
PTPRA-202ENST00000318266 DSTQ03001 7570 aaKnown RBP3.18□□□□□ -1.9
PTPRA-202ENST00000318266 MT1GP13640 62 aa3.14□□□□□ -1.91
PTPRA-202ENST00000318266 GPR98Q8WXG9 6306 aa3.14□□□□□ -1.91
PTPRA-202ENST00000318266 KRTAP12-4P60329 112 aa3.14□□□□□ -1.91
PTPRA-202ENST00000318266 SPRR2DP22532 72 aa3.12□□□□□ -1.91
PTPRA-202ENST00000318266 MUC12Q9UKN1 5478 aa3.12□□□□□ -1.91
PTPRA-202ENST00000318266 SPRR2FQ96RM1 72 aa3.1□□□□□ -1.91
PTPRA-202ENST00000318266 MDN1Q9NU22 5596 aa3.1□□□□□ -1.91
PTPRA-202ENST00000318266 LCE3BQ5TA77 95 aa3.06□□□□□ -1.92
PTPRA-202ENST00000318266 SYNE1Q8NF91 8797 aaKnown RBP3.06□□□□□ -1.92
PTPRA-202ENST00000318266 KRTAP19-4Q3LI73 84 aa3.03□□□□□ -1.92
PTPRA-202ENST00000318266 KRTAP4-9Q9BYQ8 210 aa3.01□□□□□ -1.93
PTPRA-202ENST00000318266 MT1MQ8N339 61 aa2.97□□□□□ -1.93
PTPRA-202ENST00000318266 OBSCNQ5VST9 7968 aa2.95□□□□□ -1.94
PTPRA-202ENST00000318266 LCE4AQ5TA78 99 aa2.93□□□□□ -1.94
PTPRA-202ENST00000318266 KRTAP19-3Q7Z4W3 81 aa2.93□□□□□ -1.94
PTPRA-202ENST00000318266 KRTAP5-7Q6L8G8 165 aa2.88□□□□□ -1.95
PTPRA-202ENST00000318266 KRTAP5-10Q6L8G5 202 aa2.83□□□□□ -1.96
PTPRA-202ENST00000318266 PRM1P04553 51 aa2.81□□□□□ -1.96
PTPRA-202ENST00000318266 LCE3DQ9BYE3 92 aa2.8□□□□□ -1.96
PTPRA-202ENST00000318266 KRTAP6-1Q3LI64 71 aa2.8□□□□□ -1.96
PTPRA-202ENST00000318266 LCE5AQ5TCM9 118 aa2.79□□□□□ -1.96
PTPRA-202ENST00000318266 AHNAK2Q8IVF2 5795 aa2.78□□□□□ -1.97
PTPRA-202ENST00000318266 LCE1DQ5T752 114 aa2.77□□□□□ -1.97
PTPRA-202ENST00000318266 LCE3EQ5T5B0 92 aa2.76□□□□□ -1.97
PTPRA-202ENST00000318266 KRTAP5-5Q701N2 237 aaPredicted RBP2.75□□□□□ -1.97
PTPRA-202ENST00000318266 KRTAP5-4Q6L8H1 288 aa2.74□□□□□ -1.97
PTPRA-202ENST00000318266 MT1AP04731 61 aa2.73□□□□□ -1.97
PTPRA-202ENST00000318266 HMCN1Q96RW7 5635 aa2.72□□□□□ -1.97
PTPRA-202ENST00000318266 KRTAP5-3Q6L8H2 238 aa2.65□□□□□ -1.98
PTPRA-202ENST00000318266 KRTAP6-2Q3LI66 62 aa2.64□□□□□ -1.99
PTPRA-202ENST00000318266 AHNAKQ09666 5890 aaKnown RBP2.63□□□□□ -1.99
PTPRA-202ENST00000318266 MT4P47944 62 aa2.59□□□□□ -1.99
PTPRA-202ENST00000318266 MUC5BQ9HC84 5762 aaPredicted RBP2.57□□□□□ -2
PTPRA-202ENST00000318266 KRTAP9-4Q9BYQ2 154 aa2.55□□□□□ -2
PTPRA-202ENST00000318266 LCE1FQ5T754 118 aa2.53□□□□□ -2.01
PTPRA-202ENST00000318266 KRTAP20-2Q3LI61 65 aa2.51□□□□□ -2.01
PTPRA-202ENST00000318266 KRTAP9-9Q9BYP9 154 aa2.49□□□□□ -2.01
PTPRA-202ENST00000318266 KRTAP4-6Q9BYQ5 205 aa2.49□□□□□ -2.01
PTPRA-202ENST00000318266 MT3P25713 68 aa2.4□□□□□ -2.03
PTPRA-202ENST00000318266 LCE1EQ5T753 118 aa2.39□□□□□ -2.03
PTPRA-202ENST00000318266 KRTAP4-11Q9BYQ6 195 aa2.37□□□□□ -2.03
PTPRA-202ENST00000318266 KRTAP5-2Q701N4 177 aa2.36□□□□□ -2.03
PTPRA-202ENST00000318266 MUC5ACP98088 5654 aa2.35□□□□□ -2.03
PTPRA-202ENST00000318266 KRTAP5-8O75690 187 aa2.3□□□□□ -2.04
PTPRA-202ENST00000318266 KRTAP4-12Q9BQ66 201 aa2.25□□□□□ -2.05
PTPRA-202ENST00000318266 KRTAP5-1Q6L8H4 278 aa2.07□□□□□ -2.08
PTPRA-202ENST00000318266 LCE1BQ5T7P3 118 aa2.05□□□□□ -2.08
PTPRA-202ENST00000318266 KRTAP4-2Q9BYR5 136 aa2.04□□□□□ -2.08
PTPRA-202ENST00000318266 MUC19Q7Z5P9 8384 aa1.97□□□□□ -2.09
PTPRA-202ENST00000318266 LCE1CQ5T751 118 aa1.84□□□□□ -2.12
PTPRA-202ENST00000318266 KRTAP5-11Q6L8G4 156 aa1.78□□□□□ -2.12
PTPRA-202ENST00000318266 KRTAP4-4Q9BYR3 166 aa1.78□□□□□ -2.13
PTPRA-202ENST00000318266 KRTAP21-2Q3LI59 83 aa1.75□□□□□ -2.13
PTPRA-202ENST00000318266 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.71□□□□□ -2.14
PTPRA-202ENST00000318266 KRTAP21-1Q3LI58 79 aa1.69□□□□□ -2.14
PTPRA-202ENST00000318266 PHGR1C9JFL3 82 aa1.61□□□□□ -2.15
PTPRA-202ENST00000318266 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 31.4 ms