RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 SSPOA2VEC9 5147 aa6.38□□□□□ -1.39
RTN4-201ENST00000317610 KRTAP19-6Q3LI70 58 aa6.26□□□□□ -1.41
RTN4-201ENST00000317610 KRTAP9-6A0A140TA67 174 aa6.21□□□□□ -1.41
RTN4-201ENST00000317610 CRCT1Q9UGL9 99 aa6.21□□□□□ -1.41
RTN4-201ENST00000317610 LOC100996750A0A140TA64 210 aa6.15□□□□□ -1.42
RTN4-201ENST00000317610 KRTAP4-3Q9BYR4 195 aa6.14□□□□□ -1.43
RTN4-201ENST00000317610 MT1GP13640 62 aa6.09□□□□□ -1.43
RTN4-201ENST00000317610 MT1MQ8N339 61 aa6.09□□□□□ -1.43
RTN4-201ENST00000317610 KRTAP19-3Q7Z4W3 81 aa6.07□□□□□ -1.44
RTN4-201ENST00000317610 FCGBPQ9Y6R7 5405 aaPredicted RBP5.98□□□□□ -1.45
RTN4-201ENST00000317610 MUC12Q9UKN1 5478 aa5.91□□□□□ -1.46
RTN4-201ENST00000317610 KRTAP12-4P60329 112 aa5.88□□□□□ -1.47
RTN4-201ENST00000317610 LCE5AQ5TCM9 118 aa5.85□□□□□ -1.47
RTN4-201ENST00000317610 MACF1Q9UPN3 7388 aaKnown RBP5.79□□□□□ -1.48
RTN4-201ENST00000317610 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.77□□□□□ -1.49
RTN4-201ENST00000317610 SYNE2Q8WXH0 6885 aaKnown RBP5.71□□□□□ -1.49
RTN4-201ENST00000317610 SPRR2FQ96RM1 72 aa5.69□□□□□ -1.5
RTN4-201ENST00000317610 LCE3BQ5TA77 95 aa5.67□□□□□ -1.5
RTN4-201ENST00000317610 MT1AP04731 61 aa5.65□□□□□ -1.51
RTN4-201ENST00000317610 KRTAP9-7A8MTY7 169 aa5.63□□□□□ -1.51
RTN4-201ENST00000317610 DSTQ03001 7570 aaKnown RBP5.59□□□□□ -1.51
RTN4-201ENST00000317610 KRTAP4-9Q9BYQ8 210 aa5.57□□□□□ -1.52
RTN4-201ENST00000317610 KRTAP6-1Q3LI64 71 aa5.56□□□□□ -1.52
RTN4-201ENST00000317610 SYNE1Q8NF91 8797 aaKnown RBP5.44□□□□□ -1.54
RTN4-201ENST00000317610 KRTAP6-3Q3LI67 103 aa5.44□□□□□ -1.54
RTN4-201ENST00000317610 LCE3DQ9BYE3 92 aa5.44□□□□□ -1.54
RTN4-201ENST00000317610 LCE3EQ5T5B0 92 aa5.4□□□□□ -1.54
RTN4-201ENST00000317610 KRTAP5-5Q701N2 237 aaPredicted RBP5.4□□□□□ -1.54
RTN4-201ENST00000317610 LCE1AQ5T7P2 110 aa5.31□□□□□ -1.56
RTN4-201ENST00000317610 KRTAP5-9P26371 169 aa5.3□□□□□ -1.56
RTN4-201ENST00000317610 MDN1Q9NU22 5596 aa5.28□□□□□ -1.56
RTN4-201ENST00000317610 NEBP20929 6669 aa5.23□□□□□ -1.57
RTN4-201ENST00000317610 PRM1P04553 51 aa5.23□□□□□ -1.57
RTN4-201ENST00000317610 KRTAP9-4Q9BYQ2 154 aa5.18□□□□□ -1.58
RTN4-201ENST00000317610 SPRR2EP22531 72 aa5.12□□□□□ -1.59
RTN4-201ENST00000317610 SPRR2BP35325 72 aa5.12□□□□□ -1.59
RTN4-201ENST00000317610 SPRR2AP35326 72 aa5.12□□□□□ -1.59
RTN4-201ENST00000317610 KRTAP6-2Q3LI66 62 aa5.05□□□□□ -1.6
RTN4-201ENST00000317610 KRTAP20-1Q3LI63 56 aa4.94□□□□□ -1.62
RTN4-201ENST00000317610 SPRR2DP22532 72 aa4.94□□□□□ -1.62
RTN4-201ENST00000317610 MT3P25713 68 aa4.93□□□□□ -1.62
RTN4-201ENST00000317610 KRTAP2-2Q9BYT5 123 aa4.73□□□□□ -1.65
RTN4-201ENST00000317610 OBSCNQ5VST9 7968 aa4.65□□□□□ -1.66
RTN4-201ENST00000317610 KRTAP5-4Q6L8H1 288 aa4.64□□□□□ -1.67
RTN4-201ENST00000317610 KRTAP5-2Q701N4 177 aa4.4□□□□□ -1.71
RTN4-201ENST00000317610 KRTAP4-6Q9BYQ5 205 aa4.39□□□□□ -1.71
RTN4-201ENST00000317610 MT4P47944 62 aa4.34□□□□□ -1.72
RTN4-201ENST00000317610 KRTAP20-2Q3LI61 65 aa4.32□□□□□ -1.72
RTN4-201ENST00000317610 LCE4AQ5TA78 99 aa4.32□□□□□ -1.72
RTN4-201ENST00000317610 LCE1DQ5T752 114 aa4.32□□□□□ -1.72
RTN4-201ENST00000317610 HMCN1Q96RW7 5635 aa4.27□□□□□ -1.73
RTN4-201ENST00000317610 MUC5ACP98088 5654 aa4.19□□□□□ -1.74
RTN4-201ENST00000317610 KRTAP5-3Q6L8H2 238 aa4.13□□□□□ -1.75
RTN4-201ENST00000317610 LCE1EQ5T753 118 aa4.01□□□□□ -1.77
RTN4-201ENST00000317610 GPR98Q8WXG9 6306 aa4□□□□□ -1.77
RTN4-201ENST00000317610 AHNAK2Q8IVF2 5795 aa3.99□□□□□ -1.77
RTN4-201ENST00000317610 KRTAP5-10Q6L8G5 202 aa3.99□□□□□ -1.77
RTN4-201ENST00000317610 KRTAP5-1Q6L8H4 278 aa3.94□□□□□ -1.78
RTN4-201ENST00000317610 KRTAP4-11Q9BYQ6 195 aa3.9□□□□□ -1.78
RTN4-201ENST00000317610 LCE1BQ5T7P3 118 aa3.88□□□□□ -1.79
RTN4-201ENST00000317610 KRTAP4-2Q9BYR5 136 aa3.79□□□□□ -1.8
RTN4-201ENST00000317610 LCE1CQ5T751 118 aa3.79□□□□□ -1.8
RTN4-201ENST00000317610 KRTAP5-7Q6L8G8 165 aa3.64□□□□□ -1.83
RTN4-201ENST00000317610 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.63□□□□□ -1.83
RTN4-201ENST00000317610 KRTAP21-2Q3LI59 83 aa3.6□□□□□ -1.83
RTN4-201ENST00000317610 KRTAP5-8O75690 187 aa3.53□□□□□ -1.84
RTN4-201ENST00000317610 KRTAP21-1Q3LI58 79 aa3.36□□□□□ -1.87
RTN4-201ENST00000317610 KRTAP4-12Q9BQ66 201 aa3.36□□□□□ -1.87
RTN4-201ENST00000317610 KRTAP9-9Q9BYP9 154 aa3.32□□□□□ -1.88
RTN4-201ENST00000317610 MUC5BQ9HC84 5762 aaPredicted RBP3.27□□□□□ -1.89
RTN4-201ENST00000317610 KRTAP5-11Q6L8G4 156 aa3.24□□□□□ -1.89
RTN4-201ENST00000317610 KRTAP4-4Q9BYR3 166 aa3.21□□□□□ -1.9
RTN4-201ENST00000317610 AHNAKQ09666 5890 aaKnown RBP3.15□□□□□ -1.91
RTN4-201ENST00000317610 MUC19Q7Z5P9 8384 aa3.02□□□□□ -1.93
RTN4-201ENST00000317610 LCE1FQ5T754 118 aa2.92□□□□□ -1.94
RTN4-201ENST00000317610 PHGR1C9JFL3 82 aa2.8□□□□□ -1.96
RTN4-201ENST00000317610 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 12.5 ms