RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 CRCT1Q9UGL9 99 aa6.29□□□□□ -1.4
CCDC43-201ENST00000315286 A0A0A0MQY5 61 aa6.26□□□□□ -1.41
CCDC43-201ENST00000315286 KRTAP19-3Q7Z4W3 81 aa6.23□□□□□ -1.41
CCDC43-201ENST00000315286 SPRR2FQ96RM1 72 aa6.22□□□□□ -1.41
CCDC43-201ENST00000315286 SYNE2Q8WXH0 6885 aaKnown RBP6.21□□□□□ -1.42
CCDC43-201ENST00000315286 MT1GP13640 62 aa6.19□□□□□ -1.42
CCDC43-201ENST00000315286 MT1MQ8N339 61 aa6.16□□□□□ -1.42
CCDC43-201ENST00000315286 KRTAP4-3Q9BYR4 195 aa6.15□□□□□ -1.42
CCDC43-201ENST00000315286 LCE5AQ5TCM9 118 aa6.09□□□□□ -1.43
CCDC43-201ENST00000315286 LOC100996750A0A140TA64 210 aa6.01□□□□□ -1.45
CCDC43-201ENST00000315286 KRTAP5-9P26371 169 aa6□□□□□ -1.45
CCDC43-201ENST00000315286 DSTQ03001 7570 aaKnown RBP5.96□□□□□ -1.46
CCDC43-201ENST00000315286 MDN1Q9NU22 5596 aa5.96□□□□□ -1.46
CCDC43-201ENST00000315286 KRTAP9-6A0A140TA67 174 aa5.94□□□□□ -1.46
CCDC43-201ENST00000315286 KRTAP2-3P0C7H8 128 aa5.9□□□□□ -1.46
CCDC43-201ENST00000315286 LCE1AQ5T7P2 110 aa5.9□□□□□ -1.46
CCDC43-201ENST00000315286 KRTAP2-4Q9BYR9 128 aa5.9□□□□□ -1.46
CCDC43-201ENST00000315286 KRTAP2-1Q9BYU5 128 aa5.9□□□□□ -1.46
CCDC43-201ENST00000315286 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.81□□□□□ -1.48
CCDC43-201ENST00000315286 SPRR2EP22531 72 aa5.81□□□□□ -1.48
CCDC43-201ENST00000315286 SPRR2BP35325 72 aa5.81□□□□□ -1.48
CCDC43-201ENST00000315286 SPRR2AP35326 72 aa5.81□□□□□ -1.48
CCDC43-201ENST00000315286 KRTAP6-3Q3LI67 103 aa5.73□□□□□ -1.49
CCDC43-201ENST00000315286 INE1O15225 51 aa5.71□□□□□ -1.5
CCDC43-201ENST00000315286 SPRR2DP22532 72 aa5.57□□□□□ -1.52
CCDC43-201ENST00000315286 KRTAP5-5Q701N2 237 aaPredicted RBP5.51□□□□□ -1.53
CCDC43-201ENST00000315286 KRTAP6-1Q3LI64 71 aa5.49□□□□□ -1.53
CCDC43-201ENST00000315286 MT1AP04731 61 aa5.47□□□□□ -1.53
CCDC43-201ENST00000315286 KRTAP4-6Q9BYQ5 205 aa5.46□□□□□ -1.54
CCDC43-201ENST00000315286 NEBP20929 6669 aa5.43□□□□□ -1.54
CCDC43-201ENST00000315286 LCE3BQ5TA77 95 aa5.41□□□□□ -1.54
CCDC43-201ENST00000315286 SYNE1Q8NF91 8797 aaKnown RBP5.37□□□□□ -1.55
CCDC43-201ENST00000315286 KRTAP9-7A8MTY7 169 aa5.36□□□□□ -1.55
CCDC43-201ENST00000315286 KRTAP4-9Q9BYQ8 210 aa5.22□□□□□ -1.57
CCDC43-201ENST00000315286 KRTAP9-4Q9BYQ2 154 aa5.19□□□□□ -1.58
CCDC43-201ENST00000315286 KRTAP12-4P60329 112 aa5.11□□□□□ -1.59
CCDC43-201ENST00000315286 KRTAP5-4Q6L8H1 288 aa5.09□□□□□ -1.59
CCDC43-201ENST00000315286 KRTAP6-2Q3LI66 62 aa5□□□□□ -1.61
CCDC43-201ENST00000315286 LCE3DQ9BYE3 92 aa5□□□□□ -1.61
CCDC43-201ENST00000315286 MT3P25713 68 aa4.93□□□□□ -1.62
CCDC43-201ENST00000315286 LCE4AQ5TA78 99 aa4.89□□□□□ -1.63
CCDC43-201ENST00000315286 MT4P47944 62 aa4.88□□□□□ -1.63
CCDC43-201ENST00000315286 LCE3EQ5T5B0 92 aa4.88□□□□□ -1.63
CCDC43-201ENST00000315286 KRTAP2-2Q9BYT5 123 aa4.87□□□□□ -1.63
CCDC43-201ENST00000315286 OBSCNQ5VST9 7968 aa4.78□□□□□ -1.64
CCDC43-201ENST00000315286 KRTAP20-2Q3LI61 65 aa4.77□□□□□ -1.65
CCDC43-201ENST00000315286 KRTAP20-1Q3LI63 56 aa4.76□□□□□ -1.65
CCDC43-201ENST00000315286 HMCN1Q96RW7 5635 aa4.74□□□□□ -1.65
CCDC43-201ENST00000315286 LCE1DQ5T752 114 aa4.72□□□□□ -1.65
CCDC43-201ENST00000315286 KRTAP5-2Q701N4 177 aa4.68□□□□□ -1.66
CCDC43-201ENST00000315286 KRTAP5-3Q6L8H2 238 aa4.58□□□□□ -1.68
CCDC43-201ENST00000315286 PRM1P04553 51 aa4.45□□□□□ -1.7
CCDC43-201ENST00000315286 KRTAP9-9Q9BYP9 154 aa4.22□□□□□ -1.73
CCDC43-201ENST00000315286 LCE1EQ5T753 118 aa4.18□□□□□ -1.74
CCDC43-201ENST00000315286 KRTAP4-2Q9BYR5 136 aa4.15□□□□□ -1.75
CCDC43-201ENST00000315286 MUC5ACP98088 5654 aa4.1□□□□□ -1.75
CCDC43-201ENST00000315286 KRTAP4-11Q9BYQ6 195 aa4.06□□□□□ -1.76
CCDC43-201ENST00000315286 LCE1BQ5T7P3 118 aa4.02□□□□□ -1.77
CCDC43-201ENST00000315286 KRTAP5-1Q6L8H4 278 aa4.02□□□□□ -1.77
CCDC43-201ENST00000315286 AHNAK2Q8IVF2 5795 aa4.02□□□□□ -1.77
CCDC43-201ENST00000315286 KRTAP4-12Q9BQ66 201 aa3.99□□□□□ -1.77
CCDC43-201ENST00000315286 GPR98Q8WXG9 6306 aa3.99□□□□□ -1.77
CCDC43-201ENST00000315286 KRTAP5-10Q6L8G5 202 aa3.97□□□□□ -1.77
CCDC43-201ENST00000315286 LCE1CQ5T751 118 aa3.93□□□□□ -1.78
CCDC43-201ENST00000315286 KRTAP5-8O75690 187 aa3.9□□□□□ -1.78
CCDC43-201ENST00000315286 KRTAP5-7Q6L8G8 165 aa3.79□□□□□ -1.8
CCDC43-201ENST00000315286 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.68□□□□□ -1.82
CCDC43-201ENST00000315286 KRTAP21-2Q3LI59 83 aa3.58□□□□□ -1.84
CCDC43-201ENST00000315286 MUC5BQ9HC84 5762 aaPredicted RBP3.43□□□□□ -1.86
CCDC43-201ENST00000315286 KRTAP5-11Q6L8G4 156 aa3.42□□□□□ -1.86
CCDC43-201ENST00000315286 KRTAP4-4Q9BYR3 166 aa3.23□□□□□ -1.89
CCDC43-201ENST00000315286 AHNAKQ09666 5890 aaKnown RBP3.12□□□□□ -1.91
CCDC43-201ENST00000315286 PHGR1C9JFL3 82 aa2.96□□□□□ -1.94
CCDC43-201ENST00000315286 LCE1FQ5T754 118 aa2.96□□□□□ -1.94
CCDC43-201ENST00000315286 MUC19Q7Z5P9 8384 aa2.86□□□□□ -1.95
CCDC43-201ENST00000315286 KRTAP21-1Q3LI58 79 aa2.75□□□□□ -1.97
CCDC43-201ENST00000315286 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 10.5 ms