RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 KRTAP9-7A8MTY7 169 aa4.65□□□□□ -1.66
SKA3-201ENST00000298260 FCGBPQ9Y6R7 5405 aaPredicted RBP4.64□□□□□ -1.67
SKA3-201ENST00000298260 KRTAP19-7Q3SYF9 63 aa4.59□□□□□ -1.67
SKA3-201ENST00000298260 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.55□□□□□ -1.68
SKA3-201ENST00000298260 MACF1Q9UPN3 7388 aaKnown RBP4.53□□□□□ -1.68
SKA3-201ENST00000298260 LOC100996750A0A140TA64 210 aa4.52□□□□□ -1.69
SKA3-201ENST00000298260 SYNE2Q8WXH0 6885 aaKnown RBP4.51□□□□□ -1.69
SKA3-201ENST00000298260 MUC12Q9UKN1 5478 aa4.51□□□□□ -1.69
SKA3-201ENST00000298260 KRTAP19-6Q3LI70 58 aa4.46□□□□□ -1.7
SKA3-201ENST00000298260 MT1LQ93083 61 aa4.46□□□□□ -1.7
SKA3-201ENST00000298260 KRTAP4-3Q9BYR4 195 aa4.45□□□□□ -1.7
SKA3-201ENST00000298260 KRTAP12-4P60329 112 aa4.43□□□□□ -1.7
SKA3-201ENST00000298260 DSTQ03001 7570 aaKnown RBP4.4□□□□□ -1.7
SKA3-201ENST00000298260 MT1EP04732 61 aa4.38□□□□□ -1.71
SKA3-201ENST00000298260 MT1GP13640 62 aa4.36□□□□□ -1.71
SKA3-201ENST00000298260 MDN1Q9NU22 5596 aa4.28□□□□□ -1.72
SKA3-201ENST00000298260 SYNE1Q8NF91 8797 aaKnown RBP4.28□□□□□ -1.72
SKA3-201ENST00000298260 KRTAP4-9Q9BYQ8 210 aa4.27□□□□□ -1.73
SKA3-201ENST00000298260 KRTAP6-3Q3LI67 103 aa4.22□□□□□ -1.73
SKA3-201ENST00000298260 SPRR2FQ96RM1 72 aa4.19□□□□□ -1.74
SKA3-201ENST00000298260 LCE3BQ5TA77 95 aa4.17□□□□□ -1.74
SKA3-201ENST00000298260 OBSCNQ5VST9 7968 aa4.12□□□□□ -1.75
SKA3-201ENST00000298260 KRTAP20-1Q3LI63 56 aa4.11□□□□□ -1.75
SKA3-201ENST00000298260 MT1MQ8N339 61 aa4.08□□□□□ -1.76
SKA3-201ENST00000298260 KRTAP19-4Q3LI73 84 aa4.07□□□□□ -1.76
SKA3-201ENST00000298260 PRM1P04553 51 aa3.99□□□□□ -1.77
SKA3-201ENST00000298260 KRTAP19-3Q7Z4W3 81 aa3.99□□□□□ -1.77
SKA3-201ENST00000298260 NEBP20929 6669 aa3.96□□□□□ -1.77
SKA3-201ENST00000298260 KRTAP5-5Q701N2 237 aaPredicted RBP3.93□□□□□ -1.78
SKA3-201ENST00000298260 SPRR2EP22531 72 aa3.91□□□□□ -1.78
SKA3-201ENST00000298260 SPRR2BP35325 72 aa3.91□□□□□ -1.78
SKA3-201ENST00000298260 SPRR2AP35326 72 aa3.91□□□□□ -1.78
SKA3-201ENST00000298260 LCE1AQ5T7P2 110 aa3.89□□□□□ -1.79
SKA3-201ENST00000298260 LCE3DQ9BYE3 92 aa3.89□□□□□ -1.79
SKA3-201ENST00000298260 KRTAP6-1Q3LI64 71 aa3.88□□□□□ -1.79
SKA3-201ENST00000298260 LCE5AQ5TCM9 118 aa3.88□□□□□ -1.79
SKA3-201ENST00000298260 KRTAP5-9P26371 169 aa3.87□□□□□ -1.79
SKA3-201ENST00000298260 LCE3EQ5T5B0 92 aa3.85□□□□□ -1.79
SKA3-201ENST00000298260 MT1AP04731 61 aa3.79□□□□□ -1.8
SKA3-201ENST00000298260 SPRR2DP22532 72 aa3.74□□□□□ -1.81
SKA3-201ENST00000298260 KRTAP6-2Q3LI66 62 aa3.72□□□□□ -1.81
SKA3-201ENST00000298260 KRTAP2-2Q9BYT5 123 aa3.72□□□□□ -1.81
SKA3-201ENST00000298260 GPR98Q8WXG9 6306 aa3.62□□□□□ -1.83
SKA3-201ENST00000298260 LCE1EQ5T753 118 aa3.43□□□□□ -1.86
SKA3-201ENST00000298260 KRTAP4-6Q9BYQ5 205 aa3.43□□□□□ -1.86
SKA3-201ENST00000298260 MT4P47944 62 aa3.41□□□□□ -1.86
SKA3-201ENST00000298260 KRTAP9-4Q9BYQ2 154 aa3.41□□□□□ -1.86
SKA3-201ENST00000298260 HMCN1Q96RW7 5635 aa3.34□□□□□ -1.87
SKA3-201ENST00000298260 KRTAP5-7Q6L8G8 165 aa3.31□□□□□ -1.88
SKA3-201ENST00000298260 LCE1DQ5T752 114 aa3.27□□□□□ -1.89
SKA3-201ENST00000298260 MT3P25713 68 aa3.25□□□□□ -1.89
SKA3-201ENST00000298260 KRTAP5-10Q6L8G5 202 aa3.24□□□□□ -1.89
SKA3-201ENST00000298260 KRTAP5-4Q6L8H1 288 aa3.22□□□□□ -1.89
SKA3-201ENST00000298260 LCE4AQ5TA78 99 aa3.15□□□□□ -1.9
SKA3-201ENST00000298260 AHNAK2Q8IVF2 5795 aa3.14□□□□□ -1.91
SKA3-201ENST00000298260 KRTAP20-2Q3LI61 65 aa3.12□□□□□ -1.91
SKA3-201ENST00000298260 KRTAP4-11Q9BYQ6 195 aa3.06□□□□□ -1.92
SKA3-201ENST00000298260 AHNAKQ09666 5890 aaKnown RBP3.01□□□□□ -1.93
SKA3-201ENST00000298260 KRTAP5-3Q6L8H2 238 aa3.01□□□□□ -1.93
SKA3-201ENST00000298260 MUC5ACP98088 5654 aa2.99□□□□□ -1.93
SKA3-201ENST00000298260 MUC5BQ9HC84 5762 aaPredicted RBP2.96□□□□□ -1.94
SKA3-201ENST00000298260 KRTAP5-2Q701N4 177 aa2.92□□□□□ -1.94
SKA3-201ENST00000298260 MUC19Q7Z5P9 8384 aa2.86□□□□□ -1.95
SKA3-201ENST00000298260 LCE1BQ5T7P3 118 aa2.79□□□□□ -1.96
SKA3-201ENST00000298260 LCE1FQ5T754 118 aa2.68□□□□□ -1.98
SKA3-201ENST00000298260 KRTAP5-1Q6L8H4 278 aa2.61□□□□□ -1.99
SKA3-201ENST00000298260 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
SKA3-201ENST00000298260 KRTAP4-12Q9BQ66 201 aa2.57□□□□□ -2
SKA3-201ENST00000298260 KRTAP4-2Q9BYR5 136 aa2.56□□□□□ -2
SKA3-201ENST00000298260 KRTAP9-9Q9BYP9 154 aa2.55□□□□□ -2
SKA3-201ENST00000298260 KRTAP4-4Q9BYR3 166 aa2.49□□□□□ -2.01
SKA3-201ENST00000298260 KRTAP21-1Q3LI58 79 aa2.42□□□□□ -2.02
SKA3-201ENST00000298260 KRTAP21-2Q3LI59 83 aa2.42□□□□□ -2.02
SKA3-201ENST00000298260 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
SKA3-201ENST00000298260 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.18□□□□□ -2.06
SKA3-201ENST00000298260 KRTAP5-11Q6L8G4 156 aa2.11□□□□□ -2.07
SKA3-201ENST00000298260 PHGR1C9JFL3 82 aa1.86□□□□□ -2.11
SKA3-201ENST00000298260 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 62 ms