RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 KRTAP9-6A0A140TA67 174 aa5.46□□□□□ -1.53
LSM6-201ENST00000296581 SPRR2FQ96RM1 72 aa5.44□□□□□ -1.54
LSM6-201ENST00000296581 SYNE2Q8WXH0 6885 aaKnown RBP5.42□□□□□ -1.54
LSM6-201ENST00000296581 KRTAP5-9P26371 169 aa5.4□□□□□ -1.55
LSM6-201ENST00000296581 KRTAP19-3Q7Z4W3 81 aa5.39□□□□□ -1.55
LSM6-201ENST00000296581 MUC12Q9UKN1 5478 aa5.39□□□□□ -1.55
LSM6-201ENST00000296581 KRTAP4-7Q9BYR0 210 aa5.35□□□□□ -1.55
LSM6-201ENST00000296581 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.35□□□□□ -1.55
LSM6-201ENST00000296581 MT1GP13640 62 aa5.35□□□□□ -1.55
LSM6-201ENST00000296581 LCE5AQ5TCM9 118 aa5.3□□□□□ -1.56
LSM6-201ENST00000296581 MT1MQ8N339 61 aa5.3□□□□□ -1.56
LSM6-201ENST00000296581 KRTAP6-3Q3LI67 103 aa5.26□□□□□ -1.57
LSM6-201ENST00000296581 LCE1AQ5T7P2 110 aa5.22□□□□□ -1.57
LSM6-201ENST00000296581 KRTAP9-6A8MVA2 160 aa5.21□□□□□ -1.58
LSM6-201ENST00000296581 KRTAP4-3Q9BYR4 195 aa5.19□□□□□ -1.58
LSM6-201ENST00000296581 MDN1Q9NU22 5596 aa5.16□□□□□ -1.58
LSM6-201ENST00000296581 SPRR2EP22531 72 aa5.14□□□□□ -1.59
LSM6-201ENST00000296581 SPRR2BP35325 72 aa5.14□□□□□ -1.59
LSM6-201ENST00000296581 SPRR2AP35326 72 aa5.14□□□□□ -1.59
LSM6-201ENST00000296581 KRTAP2-3P0C7H8 128 aa5.05□□□□□ -1.6
LSM6-201ENST00000296581 KRTAP2-4Q9BYR9 128 aa5.05□□□□□ -1.6
LSM6-201ENST00000296581 KRTAP2-1Q9BYU5 128 aa5.05□□□□□ -1.6
LSM6-201ENST00000296581 LOC100996750A0A140TA64 210 aa5.02□□□□□ -1.61
LSM6-201ENST00000296581 KRTAP9-7A8MTY7 169 aa5.02□□□□□ -1.61
LSM6-201ENST00000296581 KRTAP4-6Q9BYQ5 205 aa5□□□□□ -1.61
LSM6-201ENST00000296581 SPRR2DP22532 72 aa4.96□□□□□ -1.62
LSM6-201ENST00000296581 NEBP20929 6669 aa4.94□□□□□ -1.62
LSM6-201ENST00000296581 DSTQ03001 7570 aaKnown RBP4.92□□□□□ -1.62
LSM6-201ENST00000296581 KRTAP5-5Q701N2 237 aaPredicted RBP4.78□□□□□ -1.64
LSM6-201ENST00000296581 LCE3BQ5TA77 95 aa4.76□□□□□ -1.65
LSM6-201ENST00000296581 MT1AP04731 61 aa4.7□□□□□ -1.66
LSM6-201ENST00000296581 KRTAP6-1Q3LI64 71 aa4.65□□□□□ -1.67
LSM6-201ENST00000296581 KRTAP12-4P60329 112 aa4.62□□□□□ -1.67
LSM6-201ENST00000296581 KRTAP5-4Q6L8H1 288 aa4.53□□□□□ -1.68
LSM6-201ENST00000296581 SYNE1Q8NF91 8797 aaKnown RBP4.52□□□□□ -1.69
LSM6-201ENST00000296581 KRTAP2-2Q9BYT5 123 aa4.48□□□□□ -1.69
LSM6-201ENST00000296581 KRTAP20-1Q3LI63 56 aa4.46□□□□□ -1.7
LSM6-201ENST00000296581 KRTAP9-4Q9BYQ2 154 aa4.46□□□□□ -1.7
LSM6-201ENST00000296581 LCE4AQ5TA78 99 aa4.42□□□□□ -1.7
LSM6-201ENST00000296581 MT4P47944 62 aa4.29□□□□□ -1.72
LSM6-201ENST00000296581 KRTAP4-9Q9BYQ8 210 aa4.28□□□□□ -1.72
LSM6-201ENST00000296581 KRTAP6-2Q3LI66 62 aa4.26□□□□□ -1.73
LSM6-201ENST00000296581 MT3P25713 68 aa4.24□□□□□ -1.73
LSM6-201ENST00000296581 KRTAP20-2Q3LI61 65 aa4.22□□□□□ -1.73
LSM6-201ENST00000296581 LCE1DQ5T752 114 aa4.22□□□□□ -1.73
LSM6-201ENST00000296581 PRM1P04553 51 aa4.19□□□□□ -1.74
LSM6-201ENST00000296581 HMCN1Q96RW7 5635 aa4.17□□□□□ -1.74
LSM6-201ENST00000296581 KRTAP5-2Q701N4 177 aa4.13□□□□□ -1.75
LSM6-201ENST00000296581 LCE3DQ9BYE3 92 aa4.12□□□□□ -1.75
LSM6-201ENST00000296581 KRTAP5-3Q6L8H2 238 aa4.08□□□□□ -1.76
LSM6-201ENST00000296581 LCE3EQ5T5B0 92 aa4.02□□□□□ -1.77
LSM6-201ENST00000296581 KRTAP9-9Q9BYP9 154 aa3.92□□□□□ -1.78
LSM6-201ENST00000296581 OBSCNQ5VST9 7968 aa3.89□□□□□ -1.79
LSM6-201ENST00000296581 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
LSM6-201ENST00000296581 KRTAP4-12Q9BQ66 201 aa3.8□□□□□ -1.8
LSM6-201ENST00000296581 KRTAP4-2Q9BYR5 136 aa3.79□□□□□ -1.8
LSM6-201ENST00000296581 AHNAK2Q8IVF2 5795 aa3.68□□□□□ -1.82
LSM6-201ENST00000296581 KRTAP4-11Q9BYQ6 195 aa3.64□□□□□ -1.83
LSM6-201ENST00000296581 KRTAP5-1Q6L8H4 278 aa3.55□□□□□ -1.84
LSM6-201ENST00000296581 KRTAP5-8O75690 187 aa3.51□□□□□ -1.85
LSM6-201ENST00000296581 KRTAP5-10Q6L8G5 202 aa3.49□□□□□ -1.85
LSM6-201ENST00000296581 LCE1CQ5T751 118 aa3.43□□□□□ -1.86
LSM6-201ENST00000296581 LCE1BQ5T7P3 118 aa3.43□□□□□ -1.86
LSM6-201ENST00000296581 KRTAP5-7Q6L8G8 165 aa3.43□□□□□ -1.86
LSM6-201ENST00000296581 MUC5ACP98088 5654 aa3.43□□□□□ -1.86
LSM6-201ENST00000296581 GPR98Q8WXG9 6306 aa3.3□□□□□ -1.88
LSM6-201ENST00000296581 LCE1FQ5T754 118 aa3.27□□□□□ -1.89
LSM6-201ENST00000296581 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.23□□□□□ -1.89
LSM6-201ENST00000296581 KRTAP21-2Q3LI59 83 aa3.05□□□□□ -1.92
LSM6-201ENST00000296581 KRTAP5-11Q6L8G4 156 aa3.02□□□□□ -1.93
LSM6-201ENST00000296581 MUC5BQ9HC84 5762 aaPredicted RBP3.01□□□□□ -1.93
LSM6-201ENST00000296581 AHNAKQ09666 5890 aaKnown RBP2.76□□□□□ -1.97
LSM6-201ENST00000296581 KRTAP21-1Q3LI58 79 aa2.72□□□□□ -1.97
LSM6-201ENST00000296581 KRTAP4-4Q9BYR3 166 aa2.68□□□□□ -1.98
LSM6-201ENST00000296581 MUC19Q7Z5P9 8384 aa2.64□□□□□ -1.99
LSM6-201ENST00000296581 PHGR1C9JFL3 82 aa2.59□□□□□ -1.99
LSM6-201ENST00000296581 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 5.7 ms