RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 MT1GP13640 62 aa3.7□□□□□ -1.82
SNIP1-201ENST00000296215 OBSCNQ5VST9 7968 aa3.66□□□□□ -1.82
SNIP1-201ENST00000296215 MT1BP07438 61 aa3.63□□□□□ -1.83
SNIP1-201ENST00000296215 MT3P25713 68 aa3.62□□□□□ -1.83
SNIP1-201ENST00000296215 LCE1AQ5T7P2 110 aa3.61□□□□□ -1.83
SNIP1-201ENST00000296215 FAT4Q6V0I7 4981 aa3.59□□□□□ -1.83
SNIP1-201ENST00000296215 KRTAP4-8A0A0G2JLE6 195 aa3.58□□□□□ -1.84
SNIP1-201ENST00000296215 KRTAP4-8Q9BYQ9 185 aa3.58□□□□□ -1.84
SNIP1-201ENST00000296215 KRTAP9-6A8MVA2 160 aa3.58□□□□□ -1.84
SNIP1-201ENST00000296215 KRTAP19-2Q3LHN2 52 aa3.57□□□□□ -1.84
SNIP1-201ENST00000296215 GPR98Q8WXG9 6306 aa3.56□□□□□ -1.84
SNIP1-201ENST00000296215 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.52□□□□□ -1.85
SNIP1-201ENST00000296215 MT1LQ93083 61 aa3.52□□□□□ -1.85
SNIP1-201ENST00000296215 FSIP2Q5CZC0 6907 aa3.51□□□□□ -1.85
SNIP1-201ENST00000296215 KRTAP6-3Q3LI67 103 aa3.5□□□□□ -1.85
SNIP1-201ENST00000296215 LCE1EQ5T753 118 aa3.5□□□□□ -1.85
SNIP1-201ENST00000296215 FLGP20930 4061 aaPredicted RBP3.47□□□□□ -1.85
SNIP1-201ENST00000296215 KRTAP4-9Q9BYQ8 210 aa3.44□□□□□ -1.86
SNIP1-201ENST00000296215 SYNE2Q8WXH0 6885 aaKnown RBP3.44□□□□□ -1.86
SNIP1-201ENST00000296215 LOC100996750A0A140TA64 210 aa3.43□□□□□ -1.86
SNIP1-201ENST00000296215 KRTAP9-8Q9BYQ0 159 aa3.43□□□□□ -1.86
SNIP1-201ENST00000296215 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
SNIP1-201ENST00000296215 KRTAP19-6Q3LI70 58 aa3.41□□□□□ -1.86
SNIP1-201ENST00000296215 MACF1Q9UPN3 7388 aaKnown RBP3.41□□□□□ -1.86
SNIP1-201ENST00000296215 KRTAP9-3Q9BYQ3 159 aa3.37□□□□□ -1.87
SNIP1-201ENST00000296215 USH2AO75445 5202 aa3.35□□□□□ -1.87
SNIP1-201ENST00000296215 MT1EP04732 61 aa3.35□□□□□ -1.87
SNIP1-201ENST00000296215 MT4P47944 62 aa3.33□□□□□ -1.88
SNIP1-201ENST00000296215 KRTAP6-2Q3LI66 62 aa3.33□□□□□ -1.88
SNIP1-201ENST00000296215 MT1AP04731 61 aa3.27□□□□□ -1.89
SNIP1-201ENST00000296215 LCE1DQ5T752 114 aa3.27□□□□□ -1.89
SNIP1-201ENST00000296215 KRTAP4-3Q9BYR4 195 aa3.27□□□□□ -1.89
SNIP1-201ENST00000296215 KRTAP19-7Q3SYF9 63 aa3.25□□□□□ -1.89
SNIP1-201ENST00000296215 KRTAP19-3Q7Z4W3 81 aa3.2□□□□□ -1.9
SNIP1-201ENST00000296215 LCE1FQ5T754 118 aa3.18□□□□□ -1.9
SNIP1-201ENST00000296215 MUC19Q7Z5P9 8384 aa3.18□□□□□ -1.9
SNIP1-201ENST00000296215 MT1MQ8N339 61 aa3.18□□□□□ -1.9
SNIP1-201ENST00000296215 LCE4AQ5TA78 99 aa3.1□□□□□ -1.91
SNIP1-201ENST00000296215 NEBP20929 6669 aa3.1□□□□□ -1.91
SNIP1-201ENST00000296215 LCE5AQ5TCM9 118 aa3.08□□□□□ -1.92
SNIP1-201ENST00000296215 KMT2DO14686 5537 aa3.08□□□□□ -1.92
SNIP1-201ENST00000296215 FCGBPQ9Y6R7 5405 aaPredicted RBP3.05□□□□□ -1.92
SNIP1-201ENST00000296215 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
SNIP1-201ENST00000296215 DSTQ03001 7570 aaKnown RBP2.99□□□□□ -1.93
SNIP1-201ENST00000296215 KRTAP6-1Q3LI64 71 aa2.96□□□□□ -1.94
SNIP1-201ENST00000296215 KRTAP5-5Q701N2 237 aaPredicted RBP2.93□□□□□ -1.94
SNIP1-201ENST00000296215 LCE1BQ5T7P3 118 aa2.9□□□□□ -1.94
SNIP1-201ENST00000296215 KRTAP5-9P26371 169 aa2.89□□□□□ -1.95
SNIP1-201ENST00000296215 KRTAP9-9Q9BYP9 154 aa2.88□□□□□ -1.95
SNIP1-201ENST00000296215 KRTAP4-11Q9BYQ6 195 aa2.84□□□□□ -1.95
SNIP1-201ENST00000296215 MDN1Q9NU22 5596 aa2.8□□□□□ -1.96
SNIP1-201ENST00000296215 MUC12Q9UKN1 5478 aa2.75□□□□□ -1.97
SNIP1-201ENST00000296215 KRTAP9-4Q9BYQ2 154 aa2.73□□□□□ -1.97
SNIP1-201ENST00000296215 LCE1CQ5T751 118 aa2.68□□□□□ -1.98
SNIP1-201ENST00000296215 AHNAK2Q8IVF2 5795 aa2.59□□□□□ -1.99
SNIP1-201ENST00000296215 HMCN1Q96RW7 5635 aa2.46□□□□□ -2.02
SNIP1-201ENST00000296215 KRTAP20-2Q3LI61 65 aa2.39□□□□□ -2.03
SNIP1-201ENST00000296215 KRTAP5-3Q6L8H2 238 aa2.37□□□□□ -2.03
SNIP1-201ENST00000296215 KRTAP4-6Q9BYQ5 205 aa2.37□□□□□ -2.03
SNIP1-201ENST00000296215 KRTAP5-4Q6L8H1 288 aa2.33□□□□□ -2.04
SNIP1-201ENST00000296215 KRTAP4-12Q9BQ66 201 aa2.27□□□□□ -2.05
SNIP1-201ENST00000296215 AHNAKQ09666 5890 aaKnown RBP2.18□□□□□ -2.06
SNIP1-201ENST00000296215 KRTAP5-2Q701N4 177 aa2.13□□□□□ -2.07
SNIP1-201ENST00000296215 KRTAP4-4Q9BYR3 166 aa2.13□□□□□ -2.07
SNIP1-201ENST00000296215 KRTAP5-10Q6L8G5 202 aa2.11□□□□□ -2.07
SNIP1-201ENST00000296215 KRTAP4-2Q9BYR5 136 aa2.09□□□□□ -2.07
SNIP1-201ENST00000296215 KRTAP5-7Q6L8G8 165 aa2.09□□□□□ -2.08
SNIP1-201ENST00000296215 MUC5BQ9HC84 5762 aaPredicted RBP2.06□□□□□ -2.08
SNIP1-201ENST00000296215 MUC5ACP98088 5654 aa2.04□□□□□ -2.08
SNIP1-201ENST00000296215 KRTAP5-8O75690 187 aa2□□□□□ -2.09
SNIP1-201ENST00000296215 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
SNIP1-201ENST00000296215 PHGR1C9JFL3 82 aa1.99□□□□□ -2.09
SNIP1-201ENST00000296215 KRTAP5-1Q6L8H4 278 aa1.76□□□□□ -2.13
SNIP1-201ENST00000296215 KRTAP21-2Q3LI59 83 aa1.55□□□□□ -2.16
SNIP1-201ENST00000296215 KRTAP5-11Q6L8G4 156 aa1.52□□□□□ -2.17
SNIP1-201ENST00000296215 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.5□□□□□ -2.17
SNIP1-201ENST00000296215 MUC16Q8WXI7 14507 aa1.11□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 150 ms