RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 SPRR2EP22531 72 aa4.27□□□□□ -1.73
SYNGAP1-201ENST00000293748 SPRR2BP35325 72 aa4.27□□□□□ -1.73
SYNGAP1-201ENST00000293748 SPRR2AP35326 72 aa4.27□□□□□ -1.73
SYNGAP1-201ENST00000293748 MACF1Q9UPN3 7388 aaKnown RBP4.2□□□□□ -1.74
SYNGAP1-201ENST00000293748 KRTAP4-8A0A0G2JLE6 195 aa4.2□□□□□ -1.74
SYNGAP1-201ENST00000293748 KRTAP4-8Q9BYQ9 185 aa4.2□□□□□ -1.74
SYNGAP1-201ENST00000293748 SYNE1Q8NF91 8797 aaKnown RBP4.18□□□□□ -1.74
SYNGAP1-201ENST00000293748 KRTAP5-9P26371 169 aa4.17□□□□□ -1.74
SYNGAP1-201ENST00000293748 SYNE2Q8WXH0 6885 aaKnown RBP4.14□□□□□ -1.75
SYNGAP1-201ENST00000293748 SPRR2DP22532 72 aa4.14□□□□□ -1.75
SYNGAP1-201ENST00000293748 KRTAP12-4P60329 112 aa4.12□□□□□ -1.75
SYNGAP1-201ENST00000293748 KRTAP20-1Q3LI63 56 aa4.1□□□□□ -1.75
SYNGAP1-201ENST00000293748 LCE1AQ5T7P2 110 aa4.06□□□□□ -1.76
SYNGAP1-201ENST00000293748 KRTAP2-3P0C7H8 128 aa4.03□□□□□ -1.76
SYNGAP1-201ENST00000293748 LCE3BQ5TA77 95 aa4.03□□□□□ -1.76
SYNGAP1-201ENST00000293748 KRTAP2-4Q9BYR9 128 aa4.03□□□□□ -1.76
SYNGAP1-201ENST00000293748 MT1EP04732 61 aa4.02□□□□□ -1.77
SYNGAP1-201ENST00000293748 NEBP20929 6669 aa4.01□□□□□ -1.77
SYNGAP1-201ENST00000293748 KRTAP19-3Q7Z4W3 81 aa4.01□□□□□ -1.77
SYNGAP1-201ENST00000293748 MT1GP13640 62 aa4□□□□□ -1.77
SYNGAP1-201ENST00000293748 KRTAP19-7Q3SYF9 63 aa3.96□□□□□ -1.78
SYNGAP1-201ENST00000293748 LCE3DQ9BYE3 92 aa3.93□□□□□ -1.78
SYNGAP1-201ENST00000293748 KRTAP2-2Q9BYT5 123 aa3.9□□□□□ -1.78
SYNGAP1-201ENST00000293748 KRTAP2-1Q9BYU5 128 aa3.9□□□□□ -1.78
SYNGAP1-201ENST00000293748 LCE3EQ5T5B0 92 aa3.9□□□□□ -1.78
SYNGAP1-201ENST00000293748 MT1LQ93083 61 aa3.89□□□□□ -1.79
SYNGAP1-201ENST00000293748 KMT2DO14686 5537 aa3.87□□□□□ -1.79
SYNGAP1-201ENST00000293748 LCE5AQ5TCM9 118 aa3.85□□□□□ -1.79
SYNGAP1-201ENST00000293748 MT1MQ8N339 61 aa3.83□□□□□ -1.8
SYNGAP1-201ENST00000293748 DSTQ03001 7570 aaKnown RBP3.78□□□□□ -1.8
SYNGAP1-201ENST00000293748 MDN1Q9NU22 5596 aa3.75□□□□□ -1.81
SYNGAP1-201ENST00000293748 MUC12Q9UKN1 5478 aa3.74□□□□□ -1.81
SYNGAP1-201ENST00000293748 KRTAP4-7Q9BYR0 210 aa3.71□□□□□ -1.81
SYNGAP1-201ENST00000293748 LCE4AQ5TA78 99 aa3.65□□□□□ -1.83
SYNGAP1-201ENST00000293748 KRTAP4-3Q9BYR4 195 aa3.61□□□□□ -1.83
SYNGAP1-201ENST00000293748 PRM1P04553 51 aa3.6□□□□□ -1.83
SYNGAP1-201ENST00000293748 MT3P25713 68 aa3.58□□□□□ -1.84
SYNGAP1-201ENST00000293748 MUC19Q7Z5P9 8384 aa3.57□□□□□ -1.84
SYNGAP1-201ENST00000293748 MT4P47944 62 aa3.55□□□□□ -1.84
SYNGAP1-201ENST00000293748 KRTAP4-9Q9BYQ8 210 aa3.49□□□□□ -1.85
SYNGAP1-201ENST00000293748 LOC100996750A0A140TA64 210 aa3.47□□□□□ -1.85
SYNGAP1-201ENST00000293748 LCE1DQ5T752 114 aa3.42□□□□□ -1.86
SYNGAP1-201ENST00000293748 MT1AP04731 61 aa3.41□□□□□ -1.86
SYNGAP1-201ENST00000293748 KRTAP5-4Q6L8H1 288 aa3.36□□□□□ -1.87
SYNGAP1-201ENST00000293748 KRTAP9-6A8MVA2 160 aa3.34□□□□□ -1.87
SYNGAP1-201ENST00000293748 LCE1BQ5T7P3 118 aa3.3□□□□□ -1.88
SYNGAP1-201ENST00000293748 KRTAP5-5Q701N2 237 aaPredicted RBP3.29□□□□□ -1.88
SYNGAP1-201ENST00000293748 KRTAP4-6Q9BYQ5 205 aa3.28□□□□□ -1.88
SYNGAP1-201ENST00000293748 KRTAP20-2Q3LI61 65 aa3.26□□□□□ -1.89
SYNGAP1-201ENST00000293748 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
SYNGAP1-201ENST00000293748 KRTAP9-4Q9BYQ2 154 aa3.21□□□□□ -1.9
SYNGAP1-201ENST00000293748 GPR98Q8WXG9 6306 aa3.21□□□□□ -1.9
SYNGAP1-201ENST00000293748 KRTAP6-2Q3LI66 62 aa3.16□□□□□ -1.9
SYNGAP1-201ENST00000293748 HMCN1Q96RW7 5635 aa3.08□□□□□ -1.92
SYNGAP1-201ENST00000293748 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
SYNGAP1-201ENST00000293748 KRTAP5-3Q6L8H2 238 aa3.05□□□□□ -1.92
SYNGAP1-201ENST00000293748 AHNAK2Q8IVF2 5795 aa2.97□□□□□ -1.93
SYNGAP1-201ENST00000293748 KRTAP5-2Q701N4 177 aa2.96□□□□□ -1.94
SYNGAP1-201ENST00000293748 KRTAP4-11Q9BYQ6 195 aa2.95□□□□□ -1.94
SYNGAP1-201ENST00000293748 KRTAP5-10Q6L8G5 202 aa2.94□□□□□ -1.94
SYNGAP1-201ENST00000293748 KRTAP5-7Q6L8G8 165 aa2.86□□□□□ -1.95
SYNGAP1-201ENST00000293748 KRTAP9-9Q9BYP9 154 aa2.83□□□□□ -1.96
SYNGAP1-201ENST00000293748 LCE1CQ5T751 118 aa2.74□□□□□ -1.97
SYNGAP1-201ENST00000293748 LCE1FQ5T754 118 aa2.74□□□□□ -1.97
SYNGAP1-201ENST00000293748 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
SYNGAP1-201ENST00000293748 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
SYNGAP1-201ENST00000293748 AHNAKQ09666 5890 aaKnown RBP2.52□□□□□ -2.01
SYNGAP1-201ENST00000293748 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
SYNGAP1-201ENST00000293748 KRTAP4-2Q9BYR5 136 aa2.43□□□□□ -2.02
SYNGAP1-201ENST00000293748 MUC5BQ9HC84 5762 aaPredicted RBP2.37□□□□□ -2.03
SYNGAP1-201ENST00000293748 KRTAP4-4Q9BYR3 166 aa2.27□□□□□ -2.05
SYNGAP1-201ENST00000293748 KRTAP5-11Q6L8G4 156 aa2.24□□□□□ -2.05
SYNGAP1-201ENST00000293748 KRTAP4-12Q9BQ66 201 aa2.24□□□□□ -2.05
SYNGAP1-201ENST00000293748 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.24□□□□□ -2.05
SYNGAP1-201ENST00000293748 KRTAP21-2Q3LI59 83 aa2.05□□□□□ -2.08
SYNGAP1-201ENST00000293748 PHGR1C9JFL3 82 aa1.9□□□□□ -2.11
SYNGAP1-201ENST00000293748 KRTAP21-1Q3LI58 79 aa1.61□□□□□ -2.15
SYNGAP1-201ENST00000293748 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 69.7 ms