RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 KRTAP4-3Q9BYR4 195 aa9.07□□□□□ -0.96
CBX4-201ENST00000269397 MT1GP13640 62 aa8.93□□□□□ -0.98
CBX4-201ENST00000269397 FCGBPQ9Y6R7 5405 aaPredicted RBP8.92□□□□□ -0.98
CBX4-201ENST00000269397 MUC12Q9UKN1 5478 aa8.92□□□□□ -0.98
CBX4-201ENST00000269397 CRCT1Q9UGL9 99 aa8.86□□□□□ -0.99
CBX4-201ENST00000269397 KRTAP19-6Q3LI70 58 aa8.82□□□□□ -1
CBX4-201ENST00000269397 LCE2DQ5TA82 110 aaPredicted RBP8.81□□□□□ -1
CBX4-201ENST00000269397 DSTQ03001 7570 aaKnown RBP8.72□□□□□ -1.01
CBX4-201ENST00000269397 MT1MQ8N339 61 aa8.71□□□□□ -1.01
CBX4-201ENST00000269397 KRTAP19-3Q7Z4W3 81 aa8.64□□□□□ -1.03
CBX4-201ENST00000269397 KRTAP12-4P60329 112 aa8.59□□□□□ -1.03
CBX4-201ENST00000269397 LCE3BQ5TA77 95 aa8.36□□□□□ -1.07
CBX4-201ENST00000269397 MACF1Q9UPN3 7388 aaKnown RBP8.33□□□□□ -1.08
CBX4-201ENST00000269397 KRTAP4-9Q9BYQ8 210 aa8.32□□□□□ -1.08
CBX4-201ENST00000269397 SPRR2FQ96RM1 72 aa8.3□□□□□ -1.08
CBX4-201ENST00000269397 LCE5AQ5TCM9 118 aa8.29□□□□□ -1.08
CBX4-201ENST00000269397 SYNE1Q8NF91 8797 aaKnown RBP8.2□□□□□ -1.1
CBX4-201ENST00000269397 SYNE2Q8WXH0 6885 aaKnown RBP8.16□□□□□ -1.1
CBX4-201ENST00000269397 KRTAP6-1Q3LI64 71 aa8.05□□□□□ -1.12
CBX4-201ENST00000269397 MDN1Q9NU22 5596 aa8.03□□□□□ -1.12
CBX4-201ENST00000269397 MT1AP04731 61 aa7.92□□□□□ -1.14
CBX4-201ENST00000269397 KRTAP9-2Q9BYQ4 174 aa7.91□□□□□ -1.14
CBX4-201ENST00000269397 LCE3DQ9BYE3 92 aa7.86□□□□□ -1.15
CBX4-201ENST00000269397 KRTAP9-7A8MTY7 169 aa7.77□□□□□ -1.16
CBX4-201ENST00000269397 LCE3EQ5T5B0 92 aa7.76□□□□□ -1.17
CBX4-201ENST00000269397 KRTAP5-5Q701N2 237 aaPredicted RBP7.7□□□□□ -1.18
CBX4-201ENST00000269397 PRM1P04553 51 aa7.65□□□□□ -1.18
CBX4-201ENST00000269397 LCE1AQ5T7P2 110 aa7.63□□□□□ -1.19
CBX4-201ENST00000269397 OBSCNQ5VST9 7968 aa7.57□□□□□ -1.2
CBX4-201ENST00000269397 SPRR2EP22531 72 aa7.54□□□□□ -1.2
CBX4-201ENST00000269397 SPRR2BP35325 72 aa7.54□□□□□ -1.2
CBX4-201ENST00000269397 SPRR2AP35326 72 aa7.54□□□□□ -1.2
CBX4-201ENST00000269397 KRTAP5-9P26371 169 aa7.46□□□□□ -1.21
CBX4-201ENST00000269397 KRTAP9-4Q9BYQ2 154 aa7.34□□□□□ -1.23
CBX4-201ENST00000269397 KRTAP6-2Q3LI66 62 aa7.33□□□□□ -1.24
CBX4-201ENST00000269397 SPRR2DP22532 72 aa7.19□□□□□ -1.26
CBX4-201ENST00000269397 MT3P25713 68 aa7□□□□□ -1.29
CBX4-201ENST00000269397 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.94□□□□□ -1.3
CBX4-201ENST00000269397 KRTAP6-3Q3LI67 103 aa6.92□□□□□ -1.3
CBX4-201ENST00000269397 KRTAP9-6A0A140TA67 174 aa6.82□□□□□ -1.32
CBX4-201ENST00000269397 KRTAP2-2Q9BYT5 123 aa6.71□□□□□ -1.34
CBX4-201ENST00000269397 NEBP20929 6669 aa6.53□□□□□ -1.36
CBX4-201ENST00000269397 MT4P47944 62 aa6.49□□□□□ -1.37
CBX4-201ENST00000269397 KRTAP4-6Q9BYQ5 205 aa6.48□□□□□ -1.37
CBX4-201ENST00000269397 KRTAP5-4Q6L8H1 288 aa6.44□□□□□ -1.38
CBX4-201ENST00000269397 KRTAP20-2Q3LI61 65 aa6.17□□□□□ -1.42
CBX4-201ENST00000269397 HMCN1Q96RW7 5635 aa6.15□□□□□ -1.42
CBX4-201ENST00000269397 MUC5ACP98088 5654 aa6.1□□□□□ -1.43
CBX4-201ENST00000269397 KRTAP5-2Q701N4 177 aa6.09□□□□□ -1.43
CBX4-201ENST00000269397 LCE4AQ5TA78 99 aa6.02□□□□□ -1.44
CBX4-201ENST00000269397 LCE1DQ5T752 114 aa5.99□□□□□ -1.45
CBX4-201ENST00000269397 KRTAP5-3Q6L8H2 238 aa5.81□□□□□ -1.48
CBX4-201ENST00000269397 KRTAP4-11Q9BYQ6 195 aa5.81□□□□□ -1.48
CBX4-201ENST00000269397 LCE1BQ5T7P3 118 aa5.79□□□□□ -1.48
CBX4-201ENST00000269397 KRTAP20-1Q3LI63 56 aa5.73□□□□□ -1.49
CBX4-201ENST00000269397 KRTAP5-10Q6L8G5 202 aa5.69□□□□□ -1.5
CBX4-201ENST00000269397 LCE1EQ5T753 118 aa5.64□□□□□ -1.51
CBX4-201ENST00000269397 KRTAP5-1Q6L8H4 278 aa5.5□□□□□ -1.53
CBX4-201ENST00000269397 KRTAP4-2Q9BYR5 136 aa5.38□□□□□ -1.55
CBX4-201ENST00000269397 LCE1CQ5T751 118 aa5.28□□□□□ -1.56
CBX4-201ENST00000269397 KRTAP21-2Q3LI59 83 aa5.13□□□□□ -1.59
CBX4-201ENST00000269397 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.94□□□□□ -1.62
CBX4-201ENST00000269397 KRTAP4-4Q9BYR3 166 aa4.9□□□□□ -1.62
CBX4-201ENST00000269397 MUC19Q7Z5P9 8384 aa4.88□□□□□ -1.63
CBX4-201ENST00000269397 KRTAP5-8O75690 187 aa4.87□□□□□ -1.63
CBX4-201ENST00000269397 AHNAK2Q8IVF2 5795 aa4.84□□□□□ -1.63
CBX4-201ENST00000269397 KRTAP21-1Q3LI58 79 aa4.74□□□□□ -1.65
CBX4-201ENST00000269397 MUC5BQ9HC84 5762 aaPredicted RBP4.65□□□□□ -1.66
CBX4-201ENST00000269397 KRTAP5-7Q6L8G8 165 aa4.6□□□□□ -1.67
CBX4-201ENST00000269397 KRTAP4-12Q9BQ66 201 aa4.51□□□□□ -1.69
CBX4-201ENST00000269397 KRTAP5-11Q6L8G4 156 aa4.48□□□□□ -1.69
CBX4-201ENST00000269397 LCE1FQ5T754 118 aa4.36□□□□□ -1.71
CBX4-201ENST00000269397 GPR98Q8WXG9 6306 aa4.15□□□□□ -1.74
CBX4-201ENST00000269397 KRTAP9-9Q9BYP9 154 aa4.13□□□□□ -1.75
CBX4-201ENST00000269397 PHGR1C9JFL3 82 aa3.92□□□□□ -1.78
CBX4-201ENST00000269397 AHNAKQ09666 5890 aaKnown RBP3.49□□□□□ -1.85
CBX4-201ENST00000269397 MUC16Q8WXI7 14507 aa2.69□□□□□ -1.98
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms