RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 FSIP2Q5CZC0 6907 aa4.66□□□□□ -1.66
NUP54-201ENST00000264883 LCE3BQ5TA77 95 aa4.61□□□□□ -1.67
NUP54-201ENST00000264883 KRTAP4-8A0A0G2JLE6 195 aa4.58□□□□□ -1.68
NUP54-201ENST00000264883 FCGBPQ9Y6R7 5405 aaPredicted RBP4.51□□□□□ -1.69
NUP54-201ENST00000264883 KMT2DO14686 5537 aa4.5□□□□□ -1.69
NUP54-201ENST00000264883 KRTAP4-12Q9BQ66 201 aa4.49□□□□□ -1.69
NUP54-201ENST00000264883 KRTAP19-7Q3SYF9 63 aa4.48□□□□□ -1.69
NUP54-201ENST00000264883 KRTAP9-9Q9BYP9 154 aa4.48□□□□□ -1.69
NUP54-201ENST00000264883 KRTAP9-4Q9BYQ2 154 aa4.48□□□□□ -1.69
NUP54-201ENST00000264883 KRTAP4-7Q9BYR0 210 aa4.47□□□□□ -1.69
NUP54-201ENST00000264883 MT1LQ93083 61 aa4.39□□□□□ -1.71
NUP54-201ENST00000264883 MT1EP04732 61 aa4.36□□□□□ -1.71
NUP54-201ENST00000264883 LCE1DQ5T752 114 aa4.35□□□□□ -1.71
NUP54-201ENST00000264883 KRTAP5-3Q6L8H2 238 aa4.35□□□□□ -1.71
NUP54-201ENST00000264883 KRTAP12-4P60329 112 aa4.3□□□□□ -1.72
NUP54-201ENST00000264883 KRTAP4-9Q9BYQ8 210 aa4.28□□□□□ -1.72
NUP54-201ENST00000264883 MACF1Q9UPN3 7388 aaKnown RBP4.27□□□□□ -1.73
NUP54-201ENST00000264883 KRTAP4-2Q9BYR5 136 aa4.22□□□□□ -1.73
NUP54-201ENST00000264883 KRTAP6-3Q3LI67 103 aa4.21□□□□□ -1.74
NUP54-201ENST00000264883 KRTAP5-9P26371 169 aa4.2□□□□□ -1.74
NUP54-201ENST00000264883 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
NUP54-201ENST00000264883 KRTAP9-7A8MTY7 169 aa4.16□□□□□ -1.74
NUP54-201ENST00000264883 MUC12Q9UKN1 5478 aa4.15□□□□□ -1.74
NUP54-201ENST00000264883 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
NUP54-201ENST00000264883 KRTAP19-3Q7Z4W3 81 aa4.09□□□□□ -1.75
NUP54-201ENST00000264883 MT1GP13640 62 aa4.09□□□□□ -1.76
NUP54-201ENST00000264883 MT1MQ8N339 61 aa4.06□□□□□ -1.76
NUP54-201ENST00000264883 KRTAP4-3Q9BYR4 195 aa4.04□□□□□ -1.76
NUP54-201ENST00000264883 LCE5AQ5TCM9 118 aa4.03□□□□□ -1.76
NUP54-201ENST00000264883 KRTAP4-11Q9BYQ6 195 aa4.03□□□□□ -1.76
NUP54-201ENST00000264883 SPRR2EP22531 72 aa4.01□□□□□ -1.77
NUP54-201ENST00000264883 SPRR2BP35325 72 aa4.01□□□□□ -1.77
NUP54-201ENST00000264883 SPRR2AP35326 72 aa4.01□□□□□ -1.77
NUP54-201ENST00000264883 LCE1AQ5T7P2 110 aa4.01□□□□□ -1.77
NUP54-201ENST00000264883 MDN1Q9NU22 5596 aa3.99□□□□□ -1.77
NUP54-201ENST00000264883 PRM1P04553 51 aa3.88□□□□□ -1.79
NUP54-201ENST00000264883 MT1AP04731 61 aa3.88□□□□□ -1.79
NUP54-201ENST00000264883 SPRR2DP22532 72 aa3.88□□□□□ -1.79
NUP54-201ENST00000264883 NEBP20929 6669 aa3.86□□□□□ -1.79
NUP54-201ENST00000264883 DSTQ03001 7570 aaKnown RBP3.83□□□□□ -1.8
NUP54-201ENST00000264883 KRTAP5-5Q701N2 237 aaPredicted RBP3.81□□□□□ -1.8
NUP54-201ENST00000264883 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
NUP54-201ENST00000264883 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
NUP54-201ENST00000264883 SYNE1Q8NF91 8797 aaKnown RBP3.77□□□□□ -1.81
NUP54-201ENST00000264883 KRTAP20-1Q3LI63 56 aa3.7□□□□□ -1.82
NUP54-201ENST00000264883 KRTAP6-1Q3LI64 71 aa3.68□□□□□ -1.82
NUP54-201ENST00000264883 KRTAP2-2Q9BYT5 123 aa3.63□□□□□ -1.83
NUP54-201ENST00000264883 KRTAP6-2Q3LI66 62 aa3.6□□□□□ -1.83
NUP54-201ENST00000264883 LCE4AQ5TA78 99 aa3.48□□□□□ -1.85
NUP54-201ENST00000264883 KRTAP5-4Q6L8H1 288 aa3.47□□□□□ -1.85
NUP54-201ENST00000264883 MT3P25713 68 aa3.35□□□□□ -1.87
NUP54-201ENST00000264883 MT4P47944 62 aa3.34□□□□□ -1.87
NUP54-201ENST00000264883 LCE1EQ5T753 118 aa3.33□□□□□ -1.88
NUP54-201ENST00000264883 OBSCNQ5VST9 7968 aa3.3□□□□□ -1.88
NUP54-201ENST00000264883 KRTAP20-2Q3LI61 65 aa3.24□□□□□ -1.89
NUP54-201ENST00000264883 HMCN1Q96RW7 5635 aa3.21□□□□□ -1.9
NUP54-201ENST00000264883 KRTAP5-2Q701N4 177 aa3.15□□□□□ -1.91
NUP54-201ENST00000264883 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.12□□□□□ -1.91
NUP54-201ENST00000264883 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
NUP54-201ENST00000264883 AHNAK2Q8IVF2 5795 aa2.9□□□□□ -1.95
NUP54-201ENST00000264883 KRTAP5-10Q6L8G5 202 aa2.87□□□□□ -1.95
NUP54-201ENST00000264883 LCE1FQ5T754 118 aa2.84□□□□□ -1.95
NUP54-201ENST00000264883 MUC5ACP98088 5654 aa2.76□□□□□ -1.97
NUP54-201ENST00000264883 KRTAP5-8O75690 187 aa2.74□□□□□ -1.97
NUP54-201ENST00000264883 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
NUP54-201ENST00000264883 KRTAP5-7Q6L8G8 165 aa2.7□□□□□ -1.98
NUP54-201ENST00000264883 KRTAP5-11Q6L8G4 156 aa2.64□□□□□ -1.99
NUP54-201ENST00000264883 LCE1CQ5T751 118 aa2.61□□□□□ -1.99
NUP54-201ENST00000264883 LCE1BQ5T7P3 118 aa2.61□□□□□ -1.99
NUP54-201ENST00000264883 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
NUP54-201ENST00000264883 KRTAP4-4Q9BYR3 166 aa2.42□□□□□ -2.02
NUP54-201ENST00000264883 KRTAP21-2Q3LI59 83 aa2.39□□□□□ -2.03
NUP54-201ENST00000264883 MUC19Q7Z5P9 8384 aa2.34□□□□□ -2.04
NUP54-201ENST00000264883 MUC5BQ9HC84 5762 aaPredicted RBP2.31□□□□□ -2.04
NUP54-201ENST00000264883 AHNAKQ09666 5890 aaKnown RBP2.27□□□□□ -2.05
NUP54-201ENST00000264883 PHGR1C9JFL3 82 aa1.98□□□□□ -2.09
NUP54-201ENST00000264883 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 62 ms