RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 SYNE2Q8WXH0 6885 aaKnown RBP8.99□□□□□ -0.97
RUNDC3A-201ENST00000225441 KRTAP19-7Q3SYF9 63 aa8.85□□□□□ -0.99
RUNDC3A-201ENST00000225441 KRTAP6-3Q3LI67 103 aa8.76□□□□□ -1.01
RUNDC3A-201ENST00000225441 MT1EP04732 61 aa8.7□□□□□ -1.02
RUNDC3A-201ENST00000225441 SPRR2FQ96RM1 72 aa8.66□□□□□ -1.02
RUNDC3A-201ENST00000225441 KRTAP9-6A8MVA2 160 aa8.63□□□□□ -1.03
RUNDC3A-201ENST00000225441 KRTAP5-9P26371 169 aa8.61□□□□□ -1.03
RUNDC3A-201ENST00000225441 MT1LQ93083 61 aa8.61□□□□□ -1.03
RUNDC3A-201ENST00000225441 KRTAP2-3P0C7H8 128 aa8.53□□□□□ -1.04
RUNDC3A-201ENST00000225441 KRTAP2-4Q9BYR9 128 aa8.53□□□□□ -1.04
RUNDC3A-201ENST00000225441 KRTAP2-1Q9BYU5 128 aa8.53□□□□□ -1.04
RUNDC3A-201ENST00000225441 MUC12Q9UKN1 5478 aa8.51□□□□□ -1.05
RUNDC3A-201ENST00000225441 NEBP20929 6669 aa8.44□□□□□ -1.06
RUNDC3A-201ENST00000225441 KRTAP4-7Q9BYR0 210 aa8.43□□□□□ -1.06
RUNDC3A-201ENST00000225441 KRTAP19-3Q7Z4W3 81 aa8.4□□□□□ -1.06
RUNDC3A-201ENST00000225441 MT1GP13640 62 aa8.31□□□□□ -1.08
RUNDC3A-201ENST00000225441 LCE1AQ5T7P2 110 aa8.3□□□□□ -1.08
RUNDC3A-201ENST00000225441 MDN1Q9NU22 5596 aa8.29□□□□□ -1.08
RUNDC3A-201ENST00000225441 LCE5AQ5TCM9 118 aa8.27□□□□□ -1.09
RUNDC3A-201ENST00000225441 SPRR2EP22531 72 aa8.26□□□□□ -1.09
RUNDC3A-201ENST00000225441 SPRR2BP35325 72 aa8.26□□□□□ -1.09
RUNDC3A-201ENST00000225441 SPRR2AP35326 72 aa8.26□□□□□ -1.09
RUNDC3A-201ENST00000225441 MT1MQ8N339 61 aa8.22□□□□□ -1.09
RUNDC3A-201ENST00000225441 KRTAP20-1Q3LI63 56 aa8.11□□□□□ -1.11
RUNDC3A-201ENST00000225441 KRTAP4-3Q9BYR4 195 aa8.04□□□□□ -1.12
RUNDC3A-201ENST00000225441 SPRR2DP22532 72 aa7.96□□□□□ -1.14
RUNDC3A-201ENST00000225441 LOC100996750A0A140TA64 210 aa7.86□□□□□ -1.15
RUNDC3A-201ENST00000225441 DSTQ03001 7570 aaKnown RBP7.68□□□□□ -1.18
RUNDC3A-201ENST00000225441 LCE3BQ5TA77 95 aa7.66□□□□□ -1.18
RUNDC3A-201ENST00000225441 KRTAP2-2Q9BYT5 123 aa7.64□□□□□ -1.19
RUNDC3A-201ENST00000225441 KRTAP5-5Q701N2 237 aaPredicted RBP7.42□□□□□ -1.22
RUNDC3A-201ENST00000225441 KRTAP12-4P60329 112 aa7.41□□□□□ -1.22
RUNDC3A-201ENST00000225441 MT1AP04731 61 aa7.4□□□□□ -1.23
RUNDC3A-201ENST00000225441 KRTAP6-1Q3LI64 71 aa7.22□□□□□ -1.25
RUNDC3A-201ENST00000225441 KRTAP5-4Q6L8H1 288 aa7.17□□□□□ -1.26
RUNDC3A-201ENST00000225441 LCE4AQ5TA78 99 aa7.07□□□□□ -1.28
RUNDC3A-201ENST00000225441 LCE3DQ9BYE3 92 aa7.03□□□□□ -1.28
RUNDC3A-201ENST00000225441 KRTAP4-9Q9BYQ8 210 aa7.03□□□□□ -1.28
RUNDC3A-201ENST00000225441 LCE3EQ5T5B0 92 aa6.97□□□□□ -1.29
RUNDC3A-201ENST00000225441 SYNE1Q8NF91 8797 aaKnown RBP6.94□□□□□ -1.3
RUNDC3A-201ENST00000225441 MT4P47944 62 aa6.91□□□□□ -1.3
RUNDC3A-201ENST00000225441 KRTAP9-4Q9BYQ2 154 aa6.88□□□□□ -1.31
RUNDC3A-201ENST00000225441 LCE1DQ5T752 114 aa6.86□□□□□ -1.31
RUNDC3A-201ENST00000225441 GPR98Q8WXG9 6306 aa6.84□□□□□ -1.31
RUNDC3A-201ENST00000225441 KRTAP4-6Q9BYQ5 205 aa6.84□□□□□ -1.31
RUNDC3A-201ENST00000225441 HMCN1Q96RW7 5635 aa6.8□□□□□ -1.32
RUNDC3A-201ENST00000225441 KRTAP20-2Q3LI61 65 aa6.71□□□□□ -1.34
RUNDC3A-201ENST00000225441 KRTAP6-2Q3LI66 62 aa6.63□□□□□ -1.35
RUNDC3A-201ENST00000225441 MT3P25713 68 aa6.6□□□□□ -1.35
RUNDC3A-201ENST00000225441 AHNAK2Q8IVF2 5795 aa6.54□□□□□ -1.36
RUNDC3A-201ENST00000225441 PRM1P04553 51 aa6.51□□□□□ -1.37
RUNDC3A-201ENST00000225441 KRTAP5-3Q6L8H2 238 aa6.47□□□□□ -1.37
RUNDC3A-201ENST00000225441 KRTAP5-2Q701N4 177 aa6.47□□□□□ -1.37
RUNDC3A-201ENST00000225441 KRTAP5-10Q6L8G5 202 aa6.4□□□□□ -1.38
RUNDC3A-201ENST00000225441 KRTAP5-7Q6L8G8 165 aa6.13□□□□□ -1.43
RUNDC3A-201ENST00000225441 OBSCNQ5VST9 7968 aa5.92□□□□□ -1.46
RUNDC3A-201ENST00000225441 KRTAP4-11Q9BYQ6 195 aa5.85□□□□□ -1.47
RUNDC3A-201ENST00000225441 LCE1EQ5T753 118 aa5.74□□□□□ -1.49
RUNDC3A-201ENST00000225441 KRTAP5-8O75690 187 aa5.63□□□□□ -1.51
RUNDC3A-201ENST00000225441 KRTAP5-1Q6L8H4 278 aa5.62□□□□□ -1.51
RUNDC3A-201ENST00000225441 MUC5ACP98088 5654 aa5.39□□□□□ -1.55
RUNDC3A-201ENST00000225441 LCE1BQ5T7P3 118 aa5.38□□□□□ -1.55
RUNDC3A-201ENST00000225441 MUC5BQ9HC84 5762 aaPredicted RBP5.38□□□□□ -1.55
RUNDC3A-201ENST00000225441 KRTAP4-2Q9BYR5 136 aa5.37□□□□□ -1.55
RUNDC3A-201ENST00000225441 LCE1CQ5T751 118 aa5.34□□□□□ -1.55
RUNDC3A-201ENST00000225441 AHNAKQ09666 5890 aaKnown RBP5.32□□□□□ -1.56
RUNDC3A-201ENST00000225441 KRTAP9-9Q9BYP9 154 aa5.26□□□□□ -1.57
RUNDC3A-201ENST00000225441 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.98□□□□□ -1.61
RUNDC3A-201ENST00000225441 KRTAP5-11Q6L8G4 156 aa4.73□□□□□ -1.65
RUNDC3A-201ENST00000225441 KRTAP21-2Q3LI59 83 aa4.72□□□□□ -1.65
RUNDC3A-201ENST00000225441 KRTAP4-12Q9BQ66 201 aa4.49□□□□□ -1.69
RUNDC3A-201ENST00000225441 LCE1FQ5T754 118 aa4.3□□□□□ -1.72
RUNDC3A-201ENST00000225441 KRTAP21-1Q3LI58 79 aa4.21□□□□□ -1.74
RUNDC3A-201ENST00000225441 KRTAP4-4Q9BYR3 166 aa4.18□□□□□ -1.74
RUNDC3A-201ENST00000225441 PHGR1C9JFL3 82 aa4.06□□□□□ -1.76
RUNDC3A-201ENST00000225441 MUC19Q7Z5P9 8384 aa3.53□□□□□ -1.84
RUNDC3A-201ENST00000225441 MUC16Q8WXI7 14507 aa2.54□□□□□ -2
Retrieved 77 of 20,778 RNA–protein pairs in 12.8 ms