RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 A8MUN3 132 aa12.2□□□□□ -0.46
VEGFA-231ENST00000640499 KRTAP19-1Q8IUB9 90 aa12.2□□□□□ -0.46
VEGFA-231ENST00000640499 FAM236AA0A1B0GUQ0 79 aa12.19□□□□□ -0.46
VEGFA-231ENST00000640499 FAM236BA0A1B0GV22 79 aa12.19□□□□□ -0.46
VEGFA-231ENST00000640499 FCGBPQ9Y6R7 5405 aaPredicted RBP12.16□□□□□ -0.46
VEGFA-231ENST00000640499 TRAV7A0A075B6U4 112 aa12.12□□□□□ -0.47
VEGFA-231ENST00000640499 NDUFC1O43677 76 aa12.09□□□□□ -0.47
VEGFA-231ENST00000640499 SMIM20Q8N5G0 67 aa12.07□□□□□ -0.48
VEGFA-231ENST00000640499 KRTAP19-6Q3LI70 58 aa12.05□□□□□ -0.48
VEGFA-231ENST00000640499 KRTAP9-1A8MXZ3 250 aaPredicted RBP12.03□□□□□ -0.48
VEGFA-231ENST00000640499 DMAC1Q96GE9 116 aa12.03□□□□□ -0.48
VEGFA-231ENST00000640499 SPRR2GQ9BYE4 73 aa12.03□□□□□ -0.48
VEGFA-231ENST00000640499 H0YAA0 97 aa11.96□□□□□ -0.49
VEGFA-231ENST00000640499 KRTAP19-8Q3LI54 63 aa11.93□□□□□ -0.5
VEGFA-231ENST00000640499 MT1BP07438 61 aa11.92□□□□□ -0.5
VEGFA-231ENST00000640499 KRTAP9-7A8MTY7 169 aa11.91□□□□□ -0.5
VEGFA-231ENST00000640499 SNURFQ9Y675 71 aa11.87□□□□□ -0.51
VEGFA-231ENST00000640499 ADM2Q7Z4H4 148 aa11.85□□□□□ -0.51
VEGFA-231ENST00000640499 CRIPTQ9P021 101 aa11.84□□□□□ -0.51
VEGFA-231ENST00000640499 MACF1Q9UPN3 7388 aaKnown RBP11.83□□□□□ -0.52
VEGFA-231ENST00000640499 SERP2Q8N6R1 65 aa11.82□□□□□ -0.52
VEGFA-231ENST00000640499 Q5VV11 94 aa11.79□□□□□ -0.52
VEGFA-231ENST00000640499 C20orf197Q8N268 126 aa11.76□□□□□ -0.53
VEGFA-231ENST00000640499 ACYP2P14621 99 aa11.74□□□□□ -0.53
VEGFA-231ENST00000640499 KRTAP3-2Q9BYR7 98 aa11.7□□□□□ -0.54
VEGFA-231ENST00000640499 SYNE2Q8WXH0 6885 aaKnown RBP11.69□□□□□ -0.54
VEGFA-231ENST00000640499 P0C880 135 aa11.69□□□□□ -0.54
VEGFA-231ENST00000640499 SPANXA2-OT1Q8N9U9 137 aa11.63□□□□□ -0.55
VEGFA-231ENST00000640499 COX7CP15954 63 aa11.54□□□□□ -0.56
VEGFA-231ENST00000640499 A6NN06 94 aa11.53□□□□□ -0.56
VEGFA-231ENST00000640499 KRTAP10-5P60370 271 aa11.53□□□□□ -0.56
VEGFA-231ENST00000640499 CHKB-CPT1BH3BT56 60 aa11.48□□□□□ -0.57
VEGFA-231ENST00000640499 SPTSSBQ8NFR3 76 aa11.46□□□□□ -0.57
VEGFA-231ENST00000640499 CYSTM1Q9H1C7 97 aa11.46□□□□□ -0.57
VEGFA-231ENST00000640499 R4GN34 69 aa11.45□□□□□ -0.58
VEGFA-231ENST00000640499 M0QZ58 72 aa11.41□□□□□ -0.58
VEGFA-231ENST00000640499 H7BZZ5 65 aa11.35□□□□□ -0.59
VEGFA-231ENST00000640499 COA5Q86WW8 74 aa11.3□□□□□ -0.6
VEGFA-231ENST00000640499 ANAPC13Q9BS18 74 aa11.26□□□□□ -0.61
VEGFA-231ENST00000640499 MT1XP80297 61 aa11.24□□□□□ -0.61
VEGFA-231ENST00000640499 KRTAP6-3Q3LI67 103 aa11.24□□□□□ -0.61
VEGFA-231ENST00000640499 PLAC4Q8WY50 150 aa11.24□□□□□ -0.61
VEGFA-231ENST00000640499 LINC01554Q52M75 96 aa11.22□□□□□ -0.61
VEGFA-231ENST00000640499 CCDC179H3BU77 68 aa11.12□□□□□ -0.63
VEGFA-231ENST00000640499 KRTAP13-4Q3LI77 160 aa11.08□□□□□ -0.64
VEGFA-231ENST00000640499 PRO2289Q9P1D8 64 aa11.07□□□□□ -0.64
VEGFA-231ENST00000640499 NEBP20929 6669 aa10.95□□□□□ -0.66
VEGFA-231ENST00000640499 KMT2DO14686 5537 aa10.94□□□□□ -0.66
VEGFA-231ENST00000640499 MUC12Q9UKN1 5478 aa10.89□□□□□ -0.67
VEGFA-231ENST00000640499 KRTAP5-9P26371 169 aa10.86□□□□□ -0.67
VEGFA-231ENST00000640499 SERP1Q9Y6X1 66 aa10.86□□□□□ -0.67
VEGFA-231ENST00000640499 KRTAP12-2P59991 146 aa10.85□□□□□ -0.67
VEGFA-231ENST00000640499 SEC61GP60059 68 aa10.85□□□□□ -0.67
VEGFA-231ENST00000640499 SPATA8Q6RVD6 105 aa10.76□□□□□ -0.69
VEGFA-231ENST00000640499 A0A1B0GU33 70 aa10.75□□□□□ -0.69
VEGFA-231ENST00000640499 KRTAP10-7P60409 375 aaPredicted RBP10.75□□□□□ -0.69
VEGFA-231ENST00000640499 ATP5EP56381 51 aaPredicted RBP10.74□□□□□ -0.69
VEGFA-231ENST00000640499 KRTAP4-8A0A0G2JLE6 195 aa10.68□□□□□ -0.7
VEGFA-231ENST00000640499 KRTAP4-8Q9BYQ9 185 aa10.68□□□□□ -0.7
VEGFA-231ENST00000640499 A0A0D9SG42 100 aa10.66□□□□□ -0.7
VEGFA-231ENST00000640499 A0A1B0GU69 56 aa10.66□□□□□ -0.7
VEGFA-231ENST00000640499 KRTAP10-12P60413 245 aa10.66□□□□□ -0.7
VEGFA-231ENST00000640499 MDN1Q9NU22 5596 aa10.63□□□□□ -0.71
VEGFA-231ENST00000640499 TMEM258P61165 79 aa10.62□□□□□ -0.71
VEGFA-231ENST00000640499 KRTAP8-1Q8IUC2 63 aa10.61□□□□□ -0.71
VEGFA-231ENST00000640499 CAMK2N1Q7Z7J9 78 aa10.56□□□□□ -0.72
VEGFA-231ENST00000640499 SPRR2FQ96RM1 72 aa10.56□□□□□ -0.72
VEGFA-231ENST00000640499 KRTAP12-1P59990 96 aa10.53□□□□□ -0.72
VEGFA-231ENST00000640499 LINC01558Q9Y6Z2 57 aa10.48□□□□□ -0.73
VEGFA-231ENST00000640499 SPINT4Q6UDR6 99 aa10.47□□□□□ -0.73
VEGFA-231ENST00000640499 KRTAP20-1Q3LI63 56 aa10.45□□□□□ -0.74
VEGFA-231ENST00000640499 A8MU10 97 aa10.44□□□□□ -0.74
VEGFA-231ENST00000640499 SMIM26A0A096LP01 95 aa10.38□□□□□ -0.75
VEGFA-231ENST00000640499 PRR15LQ9BU68 103 aa10.36□□□□□ -0.75
VEGFA-231ENST00000640499 SPRR2EP22531 72 aa10.33□□□□□ -0.76
VEGFA-231ENST00000640499 SPRR2BP35325 72 aa10.33□□□□□ -0.76
VEGFA-231ENST00000640499 SPRR2AP35326 72 aa10.33□□□□□ -0.76
VEGFA-231ENST00000640499 LCE1AQ5T7P2 110 aa10.3□□□□□ -0.76
VEGFA-231ENST00000640499 KRTAP2-3P0C7H8 128 aa10.16□□□□□ -0.78
VEGFA-231ENST00000640499 KRTAP2-4Q9BYR9 128 aa10.16□□□□□ -0.78
VEGFA-231ENST00000640499 UQCR11O14957 56 aa10.09□□□□□ -0.79
VEGFA-231ENST00000640499 C10orf95Q9H7T3 257 aa10.08□□□□□ -0.8
VEGFA-231ENST00000640499 KRTAP19-7Q3SYF9 63 aa10.07□□□□□ -0.8
VEGFA-231ENST00000640499 Q1T7F1 81 aa9.99□□□□□ -0.81
VEGFA-231ENST00000640499 SPRR2DP22532 72 aa9.97□□□□□ -0.81
VEGFA-231ENST00000640499 PSPHP1O15172 72 aa9.94□□□□□ -0.82
VEGFA-231ENST00000640499 V9GYY9 64 aa9.93□□□□□ -0.82
VEGFA-231ENST00000640499 MT1EP04732 61 aa9.92□□□□□ -0.82
VEGFA-231ENST00000640499 PCP4P48539 62 aa9.91□□□□□ -0.82
VEGFA-231ENST00000640499 MIR22HGQ0VDD5 57 aa9.91□□□□□ -0.82
VEGFA-231ENST00000640499 KRTAP19-5Q3LI72 72 aa9.86□□□□□ -0.83
VEGFA-231ENST00000640499 TNP1P09430 55 aa9.84□□□□□ -0.83
VEGFA-231ENST00000640499 KRTAP2-2Q9BYT5 123 aa9.84□□□□□ -0.83
VEGFA-231ENST00000640499 KRTAP2-1Q9BYU5 128 aa9.84□□□□□ -0.83
VEGFA-231ENST00000640499 LCE3AQ5TA76 89 aa9.78□□□□□ -0.84
VEGFA-231ENST00000640499 LCE5AQ5TCM9 118 aa9.76□□□□□ -0.85
VEGFA-231ENST00000640499 KRTAP19-3Q7Z4W3 81 aa9.75□□□□□ -0.85
VEGFA-231ENST00000640499 RPS28P62857 69 aaKnown RBP9.74□□□□□ -0.85
VEGFA-231ENST00000640499 LCE3BQ5TA77 95 aa9.69□□□□□ -0.86
VEGFA-231ENST00000640499 DSTQ03001 7570 aaKnown RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 1291.8 ms