RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 COX6B2Q6YFQ2 88 aa11.26□□□□□ -0.61
CLN6-224ENST00000638076 UQCR11O14957 56 aa11.19□□□□□ -0.62
CLN6-224ENST00000638076 SPATA8Q6RVD6 105 aa11.15□□□□□ -0.62
CLN6-224ENST00000638076 MIR22HGQ0VDD5 57 aa11.13□□□□□ -0.63
CLN6-224ENST00000638076 KRTAP4-5Q9BYR2 181 aa11.09□□□□□ -0.63
CLN6-224ENST00000638076 TPRXLQ17RH7 258 aa11.03□□□□□ -0.64
CLN6-224ENST00000638076 ABCA13Q86UQ4 5058 aa10.97□□□□□ -0.65
CLN6-224ENST00000638076 LRP2P98164 4655 aa10.96□□□□□ -0.65
CLN6-224ENST00000638076 LPAP08519 4548 aa10.95□□□□□ -0.66
CLN6-224ENST00000638076 KRTAP3-3Q9BYR6 98 aa10.93□□□□□ -0.66
CLN6-224ENST00000638076 PRAC1Q96KF2 57 aa10.93□□□□□ -0.66
CLN6-224ENST00000638076 A0A1B0GU33 70 aa10.92□□□□□ -0.66
CLN6-224ENST00000638076 S4R3F8 94 aa10.9□□□□□ -0.67
CLN6-224ENST00000638076 H0YAA0 97 aa10.89□□□□□ -0.67
CLN6-224ENST00000638076 H1FX-AS1Q4G0G2 97 aa10.89□□□□□ -0.67
CLN6-224ENST00000638076 ADM2Q7Z4H4 148 aa10.87□□□□□ -0.67
CLN6-224ENST00000638076 LINC01554Q52M75 96 aa10.79□□□□□ -0.68
CLN6-224ENST00000638076 J3QL48 77 aa10.74□□□□□ -0.69
CLN6-224ENST00000638076 HERC2O95714 4834 aa10.73□□□□□ -0.69
CLN6-224ENST00000638076 KRTAP10-6P60371 365 aaPredicted RBP10.73□□□□□ -0.69
CLN6-224ENST00000638076 KRTAP3-2Q9BYR7 98 aa10.68□□□□□ -0.7
CLN6-224ENST00000638076 SEC61BP60468 96 aaKnown RBP10.62□□□□□ -0.71
CLN6-224ENST00000638076 BIRC6Q9NR09 4857 aa10.62□□□□□ -0.71
CLN6-224ENST00000638076 CSAG1Q6PB30 78 aa10.58□□□□□ -0.72
CLN6-224ENST00000638076 P0C880 135 aa10.57□□□□□ -0.72
CLN6-224ENST00000638076 KRTAP13-4Q3LI77 160 aa10.56□□□□□ -0.72
CLN6-224ENST00000638076 MUC17Q685J3 4493 aa10.52□□□□□ -0.73
CLN6-224ENST00000638076 KRTAP4-1Q9BYQ7 146 aa10.47□□□□□ -0.73
CLN6-224ENST00000638076 K7ERS5 55 aa10.46□□□□□ -0.73
CLN6-224ENST00000638076 A0A0D9SG42 100 aa10.45□□□□□ -0.74
CLN6-224ENST00000638076 H3BS24 57 aa10.29□□□□□ -0.76
CLN6-224ENST00000638076 KRTAP25-1Q3LHN0 102 aa10.28□□□□□ -0.76
CLN6-224ENST00000638076 PCLOQ9Y6V0 5065 aa10.24□□□□□ -0.77
CLN6-224ENST00000638076 KRTAP19-2Q3LHN2 52 aa10.24□□□□□ -0.77
CLN6-224ENST00000638076 M0QZ58 72 aa10.24□□□□□ -0.77
CLN6-224ENST00000638076 HERC1Q15751 4861 aa10.21□□□□□ -0.77
CLN6-224ENST00000638076 KRTAP12-2P59991 146 aa10.19□□□□□ -0.78
CLN6-224ENST00000638076 ROMO1P60602 79 aa10.17□□□□□ -0.78
CLN6-224ENST00000638076 MUC2Q02817 5179 aa10.16□□□□□ -0.78
CLN6-224ENST00000638076 KRTAP12-1P59990 96 aa10.15□□□□□ -0.79
CLN6-224ENST00000638076 SPINT4Q6UDR6 99 aa10.13□□□□□ -0.79
CLN6-224ENST00000638076 HMCN2Q8NDA2 5059 aa10.13□□□□□ -0.79
CLN6-224ENST00000638076 R4GN34 69 aa10.09□□□□□ -0.79
CLN6-224ENST00000638076 CRIPTQ9P021 101 aa10.07□□□□□ -0.8
CLN6-224ENST00000638076 LORP23490 312 aaPredicted RBP10.04□□□□□ -0.8
CLN6-224ENST00000638076 FLGP20930 4061 aaPredicted RBP9.98□□□□□ -0.81
CLN6-224ENST00000638076 C10orf95Q9H7T3 257 aa9.78□□□□□ -0.84
CLN6-224ENST00000638076 LCE2CQ5TA81 110 aa9.77□□□□□ -0.85
CLN6-224ENST00000638076 FAT4Q6V0I7 4981 aa9.7□□□□□ -0.86
CLN6-224ENST00000638076 RNF213Q63HN8 5207 aa9.65□□□□□ -0.87
CLN6-224ENST00000638076 UBR4Q5T4S7 5183 aa9.64□□□□□ -0.87
CLN6-224ENST00000638076 M0R2T5 61 aa9.54□□□□□ -0.88
CLN6-224ENST00000638076 MT1HP80294 61 aa9.54□□□□□ -0.88
CLN6-224ENST00000638076 CAMK2N1Q7Z7J9 78 aa9.53□□□□□ -0.88
CLN6-224ENST00000638076 KRTAP15-1Q3LI76 137 aa9.47□□□□□ -0.89
CLN6-224ENST00000638076 SPRR2GQ9BYE4 73 aa9.37□□□□□ -0.91
CLN6-224ENST00000638076 NDUFAF8A1L188 74 aa9.36□□□□□ -0.91
CLN6-224ENST00000638076 KRTAP19-1Q8IUB9 90 aa9.33□□□□□ -0.92
CLN6-224ENST00000638076 MT2AP02795 61 aa9.3□□□□□ -0.92
CLN6-224ENST00000638076 MT1FP04733 61 aa9.28□□□□□ -0.92
CLN6-224ENST00000638076 KRTAP10-10P60014 251 aa9.27□□□□□ -0.92
CLN6-224ENST00000638076 KRTAP9-8Q9BYQ0 159 aa9.27□□□□□ -0.92
CLN6-224ENST00000638076 PLAC4Q8WY50 150 aa9.21□□□□□ -0.93
CLN6-224ENST00000638076 A0A0A0MQY5 61 aa9.19□□□□□ -0.94
CLN6-224ENST00000638076 PP632Q6XCG6 107 aa9.13□□□□□ -0.95
CLN6-224ENST00000638076 TNP1P09430 55 aa9.13□□□□□ -0.95
CLN6-224ENST00000638076 KRTAP19-8Q3LI54 63 aa9□□□□□ -0.97
CLN6-224ENST00000638076 KRTAP23-1A1A580 65 aa8.93□□□□□ -0.98
CLN6-224ENST00000638076 MT1BP07438 61 aa8.91□□□□□ -0.98
CLN6-224ENST00000638076 KRTAP9-3Q9BYQ3 159 aa8.9□□□□□ -0.98
CLN6-224ENST00000638076 KRTAP10-5P60370 271 aa8.76□□□□□ -1.01
CLN6-224ENST00000638076 MT1XP80297 61 aa8.76□□□□□ -1.01
CLN6-224ENST00000638076 LCE2AQ5TA79 106 aaPredicted RBP8.7□□□□□ -1.02
CLN6-224ENST00000638076 LCE3AQ5TA76 89 aa8.69□□□□□ -1.02
CLN6-224ENST00000638076 LCE2BO14633 110 aa8.59□□□□□ -1.03
CLN6-224ENST00000638076 LUZP6Q538Z0 58 aa8.57□□□□□ -1.04
CLN6-224ENST00000638076 PRO2289Q9P1D8 64 aa8.51□□□□□ -1.05
CLN6-224ENST00000638076 KRTAP10-7P60409 375 aaPredicted RBP8.48□□□□□ -1.05
CLN6-224ENST00000638076 KRTAP10-12P60413 245 aa8.48□□□□□ -1.05
CLN6-224ENST00000638076 KRTAP8-1Q8IUC2 63 aa8.47□□□□□ -1.05
CLN6-224ENST00000638076 USH2AO75445 5202 aa8.39□□□□□ -1.07
CLN6-224ENST00000638076 SPRR5A0A1B0GTR4 108 aa8.37□□□□□ -1.07
CLN6-224ENST00000638076 KRTAP12-3P60328 96 aa8.3□□□□□ -1.08
CLN6-224ENST00000638076 KRTAP19-5Q3LI72 72 aa8.07□□□□□ -1.12
CLN6-224ENST00000638076 KMT2DO14686 5537 aa8.07□□□□□ -1.12
CLN6-224ENST00000638076 KRTAP4-8A0A0G2JLE6 195 aa8.04□□□□□ -1.12
CLN6-224ENST00000638076 KRTAP4-8Q9BYQ9 185 aa8.04□□□□□ -1.12
CLN6-224ENST00000638076 SSPOA2VEC9 5147 aa7.98□□□□□ -1.13
CLN6-224ENST00000638076 KRTAP19-6Q3LI70 58 aa7.84□□□□□ -1.15
CLN6-224ENST00000638076 KRTAP19-7Q3SYF9 63 aa7.8□□□□□ -1.16
CLN6-224ENST00000638076 LCE3CQ5T5A8 94 aa7.79□□□□□ -1.16
CLN6-224ENST00000638076 FSIP2Q5CZC0 6907 aa7.73□□□□□ -1.17
CLN6-224ENST00000638076 MT1EP04732 61 aa7.61□□□□□ -1.19
CLN6-224ENST00000638076 LCE2DQ5TA82 110 aaPredicted RBP7.61□□□□□ -1.19
CLN6-224ENST00000638076 INE1O15225 51 aa7.57□□□□□ -1.2
CLN6-224ENST00000638076 MT1LQ93083 61 aa7.55□□□□□ -1.2
CLN6-224ENST00000638076 KRTAP4-7Q9BYR0 210 aa7.52□□□□□ -1.2
CLN6-224ENST00000638076 KRTAP19-4Q3LI73 84 aa7.49□□□□□ -1.21
CLN6-224ENST00000638076 KRTAP9-6A8MVA2 160 aa7.46□□□□□ -1.21
CLN6-224ENST00000638076 FCGBPQ9Y6R7 5405 aaPredicted RBP7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms