RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 KRTAP19-8Q3LI54 63 aa7.34□□□□□ -1.23
CLN3-264ENST00000637985 ETDBQ3ZM63 59 aa7.33□□□□□ -1.24
CLN3-264ENST00000637985 CSAG1Q6PB30 78 aa7.32□□□□□ -1.24
CLN3-264ENST00000637985 FAM236AA0A1B0GUQ0 79 aa7.3□□□□□ -1.24
CLN3-264ENST00000637985 FAM236BA0A1B0GV22 79 aa7.3□□□□□ -1.24
CLN3-264ENST00000637985 SPRR2FQ96RM1 72 aa7.3□□□□□ -1.24
CLN3-264ENST00000637985 LCA10Q71F78 164 aa7.29□□□□□ -1.24
CLN3-264ENST00000637985 SPRR2GQ9BYE4 73 aa7.26□□□□□ -1.25
CLN3-264ENST00000637985 CYP4F30PQ9H0H9 118 aa7.24□□□□□ -1.25
CLN3-264ENST00000637985 ACYP1P07311 99 aa7.23□□□□□ -1.25
CLN3-264ENST00000637985 TRAV22A0A0B4J277 110 aa7.21□□□□□ -1.26
CLN3-264ENST00000637985 LCE1AQ5T7P2 110 aa7.2□□□□□ -1.26
CLN3-264ENST00000637985 LOC101927531A0A1B0GV80 90 aa7.19□□□□□ -1.26
CLN3-264ENST00000637985 A0A1B0GV90 55 aa7.17□□□□□ -1.26
CLN3-264ENST00000637985 ATP5EP2Q5VTU8 51 aa7.17□□□□□ -1.26
CLN3-264ENST00000637985 KRTAP3-3Q9BYR6 98 aa7.17□□□□□ -1.26
CLN3-264ENST00000637985 FAM240AA0A1B0GVK7 77 aa7.16□□□□□ -1.26
CLN3-264ENST00000637985 KLKP1Q107X0 134 aa7.16□□□□□ -1.26
CLN3-264ENST00000637985 SPRR2DP22532 72 aa7.13□□□□□ -1.27
CLN3-264ENST00000637985 UQCRQO14949 82 aa7.12□□□□□ -1.27
CLN3-264ENST00000637985 HIST1H4AP62805 103 aaKnown RBP7.12□□□□□ -1.27
CLN3-264ENST00000637985 ATOX1O00244 68 aa7.11□□□□□ -1.27
CLN3-264ENST00000637985 IMUPQ9GZP8 106 aa7.1□□□□□ -1.27
CLN3-264ENST00000637985 A0A087WVE0 104 aa7.09□□□□□ -1.27
CLN3-264ENST00000637985 CRIPTQ9P021 101 aa7.09□□□□□ -1.27
CLN3-264ENST00000637985 H0Y9P7 68 aa7.08□□□□□ -1.28
CLN3-264ENST00000637985 NDUFC1O43677 76 aa7.03□□□□□ -1.28
CLN3-264ENST00000637985 LINC00643Q86TS7 51 aa7.03□□□□□ -1.28
CLN3-264ENST00000637985 KRTAP8-1Q8IUC2 63 aa7.03□□□□□ -1.28
CLN3-264ENST00000637985 A8MUN3 132 aa7.01□□□□□ -1.29
CLN3-264ENST00000637985 H0YAA0 97 aa7.01□□□□□ -1.29
CLN3-264ENST00000637985 LCE3BQ5TA77 95 aa7.01□□□□□ -1.29
CLN3-264ENST00000637985 LINC00208Q96KT6 92 aa6.96□□□□□ -1.3
CLN3-264ENST00000637985 DSTQ03001 7570 aaKnown RBP6.93□□□□□ -1.3
CLN3-264ENST00000637985 MP68P56378 58 aa6.93□□□□□ -1.3
CLN3-264ENST00000637985 OCR1Q9BZK8 76 aa6.92□□□□□ -1.3
CLN3-264ENST00000637985 ADM2Q7Z4H4 148 aa6.89□□□□□ -1.31
CLN3-264ENST00000637985 H3BPC8 53 aa6.84□□□□□ -1.31
CLN3-264ENST00000637985 J3QR89 54 aa6.84□□□□□ -1.31
CLN3-264ENST00000637985 PRO2289Q9P1D8 64 aa6.83□□□□□ -1.32
CLN3-264ENST00000637985 MT1XP80297 61 aa6.82□□□□□ -1.32
CLN3-264ENST00000637985 KRTAP12-2P59991 146 aa6.8□□□□□ -1.32
CLN3-264ENST00000637985 KRTAP4-8A0A0G2JLE6 195 aa6.78□□□□□ -1.32
CLN3-264ENST00000637985 KRTAP4-8Q9BYQ9 185 aa6.78□□□□□ -1.32
CLN3-264ENST00000637985 C20orf197Q8N268 126 aa6.76□□□□□ -1.33
CLN3-264ENST00000637985 DMAC1Q96GE9 116 aa6.76□□□□□ -1.33
CLN3-264ENST00000637985 SCGB1A1P11684 91 aa6.75□□□□□ -1.33
CLN3-264ENST00000637985 K7ERU9 68 aa6.74□□□□□ -1.33
CLN3-264ENST00000637985 PLAC4Q8WY50 150 aa6.74□□□□□ -1.33
CLN3-264ENST00000637985 KRTAP4-9Q9BYQ8 210 aa6.74□□□□□ -1.33
CLN3-264ENST00000637985 R4GN34 69 aa6.74□□□□□ -1.33
CLN3-264ENST00000637985 P0C880 135 aa6.71□□□□□ -1.34
CLN3-264ENST00000637985 M0QZ58 72 aa6.66□□□□□ -1.34
CLN3-264ENST00000637985 KRTAP3-2Q9BYR7 98 aa6.65□□□□□ -1.34
CLN3-264ENST00000637985 TRAV7A0A075B6U4 112 aa6.64□□□□□ -1.35
CLN3-264ENST00000637985 MT-ATP8P03928 68 aa6.6□□□□□ -1.35
CLN3-264ENST00000637985 ACYP2P14621 99 aa6.6□□□□□ -1.35
CLN3-264ENST00000637985 SMIM20Q8N5G0 67 aa6.57□□□□□ -1.36
CLN3-264ENST00000637985 LINC01554Q52M75 96 aa6.56□□□□□ -1.36
CLN3-264ENST00000637985 SPTSSBQ8NFR3 76 aa6.55□□□□□ -1.36
CLN3-264ENST00000637985 HMCN1Q96RW7 5635 aa6.5□□□□□ -1.37
CLN3-264ENST00000637985 KRTAP10-7P60409 375 aaPredicted RBP6.49□□□□□ -1.37
CLN3-264ENST00000637985 LCE1DQ5T752 114 aa6.49□□□□□ -1.37
CLN3-264ENST00000637985 KRTAP10-12P60413 245 aa6.47□□□□□ -1.37
CLN3-264ENST00000637985 AHNAK2Q8IVF2 5795 aa6.47□□□□□ -1.37
CLN3-264ENST00000637985 CHKB-CPT1BH3BT56 60 aa6.46□□□□□ -1.38
CLN3-264ENST00000637985 KRTAP5-10Q6L8G5 202 aa6.43□□□□□ -1.38
CLN3-264ENST00000637985 SNURFQ9Y675 71 aa6.4□□□□□ -1.38
CLN3-264ENST00000637985 SPANXA2-OT1Q8N9U9 137 aa6.38□□□□□ -1.39
CLN3-264ENST00000637985 LCE5AQ5TCM9 118 aa6.34□□□□□ -1.39
CLN3-264ENST00000637985 MT4P47944 62 aa6.3□□□□□ -1.4
CLN3-264ENST00000637985 SERP2Q8N6R1 65 aa6.29□□□□□ -1.4
CLN3-264ENST00000637985 KRTAP5-7Q6L8G8 165 aa6.28□□□□□ -1.4
CLN3-264ENST00000637985 LCE4AQ5TA78 99 aa6.27□□□□□ -1.41
CLN3-264ENST00000637985 KRTAP13-4Q3LI77 160 aa6.23□□□□□ -1.41
CLN3-264ENST00000637985 COX7CP15954 63 aa6.19□□□□□ -1.42
CLN3-264ENST00000637985 KRTAP19-3Q7Z4W3 81 aa6.19□□□□□ -1.42
CLN3-264ENST00000637985 CAMK2N1Q7Z7J9 78 aa6.18□□□□□ -1.42
CLN3-264ENST00000637985 COA5Q86WW8 74 aa6.17□□□□□ -1.42
CLN3-264ENST00000637985 SEC61GP60059 68 aa6.13□□□□□ -1.43
CLN3-264ENST00000637985 KRTAP19-7Q3SYF9 63 aa6.12□□□□□ -1.43
CLN3-264ENST00000637985 SVIPQ8NHG7 77 aa6.12□□□□□ -1.43
CLN3-264ENST00000637985 SERP1Q9Y6X1 66 aa6.12□□□□□ -1.43
CLN3-264ENST00000637985 ANAPC13Q9BS18 74 aa6.11□□□□□ -1.43
CLN3-264ENST00000637985 KRTAP5-3Q6L8H2 238 aa6.1□□□□□ -1.43
CLN3-264ENST00000637985 CYSTM1Q9H1C7 97 aa6.1□□□□□ -1.43
CLN3-264ENST00000637985 MT1EP04732 61 aa6.09□□□□□ -1.43
CLN3-264ENST00000637985 KRTAP4-6Q9BYQ5 205 aa6.07□□□□□ -1.44
CLN3-264ENST00000637985 KRTAP5-4Q6L8H1 288 aa6.05□□□□□ -1.44
CLN3-264ENST00000637985 A0A0D9SG42 100 aa6.04□□□□□ -1.44
CLN3-264ENST00000637985 SPRR5A0A1B0GTR4 108 aa6.04□□□□□ -1.44
CLN3-264ENST00000637985 H7BZZ5 65 aa6.04□□□□□ -1.44
CLN3-264ENST00000637985 A0A1B0GU33 70 aa6.01□□□□□ -1.45
CLN3-264ENST00000637985 SPATA8Q6RVD6 105 aa6.01□□□□□ -1.45
CLN3-264ENST00000637985 CCDC179H3BU77 68 aa5.99□□□□□ -1.45
CLN3-264ENST00000637985 SPINT4Q6UDR6 99 aa5.97□□□□□ -1.45
CLN3-264ENST00000637985 MT1GP13640 62 aa5.96□□□□□ -1.46
CLN3-264ENST00000637985 PCP4P48539 62 aa5.95□□□□□ -1.46
CLN3-264ENST00000637985 KRTAP12-1P59990 96 aa5.92□□□□□ -1.46
CLN3-264ENST00000637985 PP632Q6XCG6 107 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms