RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 KRTAP13-3Q3SY46 172 aa2.3□□□□□ -2.04
SCN1A-214ENST00000637038 KRTAP4-7Q9BYR0 210 aa2.3□□□□□ -2.04
SCN1A-214ENST00000637038 P0C880 135 aa2.29□□□□□ -2.04
SCN1A-214ENST00000637038 ROMO1P60602 79 aa2.28□□□□□ -2.04
SCN1A-214ENST00000637038 RYR3Q15413 4870 aa2.28□□□□□ -2.04
SCN1A-214ENST00000637038 SPATA8Q6RVD6 105 aa2.28□□□□□ -2.05
SCN1A-214ENST00000637038 RPS29P62273 56 aaKnown RBP2.27□□□□□ -2.05
SCN1A-214ENST00000637038 LINC00304Q8N9R0 145 aa2.27□□□□□ -2.05
SCN1A-214ENST00000637038 K7ERS5 55 aa2.27□□□□□ -2.05
SCN1A-214ENST00000637038 KRTAP13-2Q52LG2 175 aa2.26□□□□□ -2.05
SCN1A-214ENST00000637038 HERC2O95714 4834 aa2.25□□□□□ -2.05
SCN1A-214ENST00000637038 SMR3BP02814 79 aaPredicted RBP2.25□□□□□ -2.05
SCN1A-214ENST00000637038 CRCT1Q9UGL9 99 aa2.25□□□□□ -2.05
SCN1A-214ENST00000637038 Q6ZSA8 131 aa2.25□□□□□ -2.05
SCN1A-214ENST00000637038 TGP01266 2768 aa2.25□□□□□ -2.05
SCN1A-214ENST00000637038 KRTAP10-2P60368 255 aa2.25□□□□□ -2.05
SCN1A-214ENST00000637038 KRTAP4-9Q9BYQ8 210 aa2.25□□□□□ -2.05
SCN1A-214ENST00000637038 CSAG1Q6PB30 78 aa2.24□□□□□ -2.05
SCN1A-214ENST00000637038 FLG2Q5D862 2391 aaPredicted RBP2.24□□□□□ -2.05
SCN1A-214ENST00000637038 KRTAP16-1A8MUX0 517 aa2.24□□□□□ -2.05
SCN1A-214ENST00000637038 KRTAP10-1P60331 282 aa2.24□□□□□ -2.05
SCN1A-214ENST00000637038 PCLOQ9Y6V0 5065 aa2.23□□□□□ -2.05
SCN1A-214ENST00000637038 KRTAP23-1A1A580 65 aa2.22□□□□□ -2.05
SCN1A-214ENST00000637038 MYCBP2O75592 4640 aa2.22□□□□□ -2.05
SCN1A-214ENST00000637038 DYNC1H1Q14204 4646 aaKnown RBP2.22□□□□□ -2.05
SCN1A-214ENST00000637038 KRTAP1-4P0C5Y4 121 aa2.22□□□□□ -2.05
SCN1A-214ENST00000637038 FAT1Q14517 4588 aa2.21□□□□□ -2.06
SCN1A-214ENST00000637038 RYR2Q92736 4967 aa2.21□□□□□ -2.06
SCN1A-214ENST00000637038 LRP1Q07954 4544 aaKnown RBP2.21□□□□□ -2.06
SCN1A-214ENST00000637038 A0A1B0GU33 70 aa2.2□□□□□ -2.06
SCN1A-214ENST00000637038 KRTAP4-5Q9BYR2 181 aa2.2□□□□□ -2.06
SCN1A-214ENST00000637038 KMT2CQ8NEZ4 4911 aaKnown RBP2.19□□□□□ -2.06
SCN1A-214ENST00000637038 A8MUU9 505 aa2.19□□□□□ -2.06
SCN1A-214ENST00000637038 C20orf166-AS1Q96NR2 134 aa2.19□□□□□ -2.06
SCN1A-214ENST00000637038 C9orf92A6NGG3 77 aa2.18□□□□□ -2.06
SCN1A-214ENST00000637038 KRTAP9-3Q9BYQ3 159 aa2.18□□□□□ -2.06
SCN1A-214ENST00000637038 LPAP08519 4548 aa2.18□□□□□ -2.06
SCN1A-214ENST00000637038 H1FX-AS1Q4G0G2 97 aa2.17□□□□□ -2.06
SCN1A-214ENST00000637038 COX6B2Q6YFQ2 88 aa2.17□□□□□ -2.06
SCN1A-214ENST00000637038 KRTAP9-7A8MTY7 169 aa2.15□□□□□ -2.06
SCN1A-214ENST00000637038 TPRXLQ17RH7 258 aa2.14□□□□□ -2.07
SCN1A-214ENST00000637038 KRTAP25-1Q3LHN0 102 aa2.14□□□□□ -2.07
SCN1A-214ENST00000637038 KRTAP10-4P60372 401 aaPredicted RBP2.14□□□□□ -2.07
SCN1A-214ENST00000637038 LCE3BQ5TA77 95 aa2.14□□□□□ -2.07
SCN1A-214ENST00000637038 LUZP6Q538Z0 58 aa2.14□□□□□ -2.07
SCN1A-214ENST00000637038 NDUFAF8A1L188 74 aa2.13□□□□□ -2.07
SCN1A-214ENST00000637038 M0R2T5 61 aa2.13□□□□□ -2.07
SCN1A-214ENST00000637038 LCE1DQ5T752 114 aa2.13□□□□□ -2.07
SCN1A-214ENST00000637038 KRTAP10-8P60410 259 aa2.13□□□□□ -2.07
SCN1A-214ENST00000637038 LCE4AQ5TA78 99 aa2.13□□□□□ -2.07
SCN1A-214ENST00000637038 H0YAA0 97 aa2.12□□□□□ -2.07
SCN1A-214ENST00000637038 RPL37P61927 97 aaKnown RBP2.11□□□□□ -2.07
SCN1A-214ENST00000637038 KIAA1109Q2LD37 5005 aa2.11□□□□□ -2.07
SCN1A-214ENST00000637038 S4R3F8 94 aa2.11□□□□□ -2.07
SCN1A-214ENST00000637038 RYR1P21817 5038 aa2.11□□□□□ -2.07
SCN1A-214ENST00000637038 KRTAP15-1Q3LI76 137 aa2.1□□□□□ -2.07
SCN1A-214ENST00000637038 KRTAP4-11Q9BYQ6 195 aa2.09□□□□□ -2.07
SCN1A-214ENST00000637038 CAMK2N1Q7Z7J9 78 aa2.09□□□□□ -2.07
SCN1A-214ENST00000637038 KRTAP3-1Q9BYR8 98 aa2.08□□□□□ -2.08
SCN1A-214ENST00000637038 CRIPTQ9P021 101 aa2.08□□□□□ -2.08
SCN1A-214ENST00000637038 MT1HL1P0DM35 61 aa2.08□□□□□ -2.08
SCN1A-214ENST00000637038 MUC17Q685J3 4493 aa2.07□□□□□ -2.08
SCN1A-214ENST00000637038 A0A0D9SG42 100 aa2.07□□□□□ -2.08
SCN1A-214ENST00000637038 SPINT4Q6UDR6 99 aa2.06□□□□□ -2.08
SCN1A-214ENST00000637038 ABCA13Q86UQ4 5058 aa2.06□□□□□ -2.08
SCN1A-214ENST00000637038 M0QZ58 72 aa2.04□□□□□ -2.08
SCN1A-214ENST00000637038 FLGP20930 4061 aaPredicted RBP2.02□□□□□ -2.09
SCN1A-214ENST00000637038 EPPK1P58107 5090 aaKnown RBP2.02□□□□□ -2.09
SCN1A-214ENST00000637038 KRTAP20-1Q3LI63 56 aa2.02□□□□□ -2.09
SCN1A-214ENST00000637038 LRP2P98164 4655 aa2.01□□□□□ -2.09
SCN1A-214ENST00000637038 KRTAP10-6P60371 365 aaPredicted RBP2.01□□□□□ -2.09
SCN1A-214ENST00000637038 KRTAP6-3Q3LI67 103 aa2□□□□□ -2.09
SCN1A-214ENST00000637038 HERC1Q15751 4861 aa1.99□□□□□ -2.09
SCN1A-214ENST00000637038 KRTAP5-3Q6L8H2 238 aa1.97□□□□□ -2.09
SCN1A-214ENST00000637038 KRTAP13-4Q3LI77 160 aa1.97□□□□□ -2.09
SCN1A-214ENST00000637038 R4GN34 69 aa1.97□□□□□ -2.09
SCN1A-214ENST00000637038 KRTAP12-1P59990 96 aa1.95□□□□□ -2.1
SCN1A-214ENST00000637038 LCE5AQ5TCM9 118 aa1.95□□□□□ -2.1
SCN1A-214ENST00000637038 KRTAP12-2P59991 146 aa1.94□□□□□ -2.1
SCN1A-214ENST00000637038 KRTAP19-2Q3LHN2 52 aa1.94□□□□□ -2.1
SCN1A-214ENST00000637038 C10orf95Q9H7T3 257 aa1.93□□□□□ -2.1
SCN1A-214ENST00000637038 KRTAP2-3P0C7H8 128 aa1.92□□□□□ -2.1
SCN1A-214ENST00000637038 KRTAP2-4Q9BYR9 128 aa1.92□□□□□ -2.1
SCN1A-214ENST00000637038 PP632Q6XCG6 107 aa1.91□□□□□ -2.1
SCN1A-214ENST00000637038 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.89□□□□□ -2.11
SCN1A-214ENST00000637038 PLAC4Q8WY50 150 aa1.87□□□□□ -2.11
SCN1A-214ENST00000637038 MUC2Q02817 5179 aa1.86□□□□□ -2.11
SCN1A-214ENST00000637038 PRO2289Q9P1D8 64 aa1.85□□□□□ -2.11
SCN1A-214ENST00000637038 TNP1P09430 55 aa1.83□□□□□ -2.12
SCN1A-214ENST00000637038 KRTAP4-1Q9BYQ7 146 aa1.83□□□□□ -2.12
SCN1A-214ENST00000637038 KRTAP9-8Q9BYQ0 159 aa1.82□□□□□ -2.12
SCN1A-214ENST00000637038 KRTAP2-2Q9BYT5 123 aa1.82□□□□□ -2.12
SCN1A-214ENST00000637038 KRTAP2-1Q9BYU5 128 aa1.82□□□□□ -2.12
SCN1A-214ENST00000637038 KRTAP10-10P60014 251 aa1.82□□□□□ -2.12
SCN1A-214ENST00000637038 OBSCNQ5VST9 7968 aa1.81□□□□□ -2.12
SCN1A-214ENST00000637038 MT1HP80294 61 aa1.8□□□□□ -2.12
SCN1A-214ENST00000637038 KRTAP19-6Q3LI70 58 aa1.8□□□□□ -2.12
SCN1A-214ENST00000637038 HMCN2Q8NDA2 5059 aa1.79□□□□□ -2.12
SCN1A-214ENST00000637038 MT3P25713 68 aa1.78□□□□□ -2.12
SCN1A-214ENST00000637038 FAT4Q6V0I7 4981 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms