RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 KRTAP10-4P60372 401 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-212ENST00000636194 CSMD2Q7Z408 3487 aa2.49□□□□□ -2.01
SCN1A-212ENST00000636194 KRTAP19-4Q3LI73 84 aa2.48□□□□□ -2.01
SCN1A-212ENST00000636194 CUBNO60494 3623 aa2.45□□□□□ -2.02
SCN1A-212ENST00000636194 DNAH3Q8TD57 4116 aa2.45□□□□□ -2.02
SCN1A-212ENST00000636194 DNAH7Q8WXX0 4024 aa2.45□□□□□ -2.02
SCN1A-212ENST00000636194 ANK2Q01484 3957 aa2.42□□□□□ -2.02
SCN1A-212ENST00000636194 MT3P25713 68 aa2.41□□□□□ -2.02
SCN1A-212ENST00000636194 ZNF469Q96JG9 3925 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-212ENST00000636194 SPRR2FQ96RM1 72 aa2.41□□□□□ -2.02
SCN1A-212ENST00000636194 KRTAP3-2Q9BYR7 98 aa2.4□□□□□ -2.03
SCN1A-212ENST00000636194 KRTAP3-3Q9BYR6 98 aa2.38□□□□□ -2.03
SCN1A-212ENST00000636194 HECTD4Q9Y4D8 3996 aa2.38□□□□□ -2.03
SCN1A-212ENST00000636194 KMT2AQ03164 3969 aa2.37□□□□□ -2.03
SCN1A-212ENST00000636194 MT1HL1P0DM35 61 aa2.37□□□□□ -2.03
SCN1A-212ENST00000636194 SVEP1Q4LDE5 3571 aa2.36□□□□□ -2.03
SCN1A-212ENST00000636194 KRTAP12-4P60329 112 aa2.36□□□□□ -2.03
SCN1A-212ENST00000636194 LCE3CQ5T5A8 94 aa2.32□□□□□ -2.04
SCN1A-212ENST00000636194 DNAH6Q9C0G6 4158 aa2.31□□□□□ -2.04
SCN1A-212ENST00000636194 DNAH1Q9P2D7 4330 aa2.3□□□□□ -2.04
SCN1A-212ENST00000636194 VPS13BQ7Z7G8 4022 aa2.29□□□□□ -2.04
SCN1A-212ENST00000636194 SPRR2EP22531 72 aa2.29□□□□□ -2.04
SCN1A-212ENST00000636194 SPRR2BP35325 72 aa2.29□□□□□ -2.04
SCN1A-212ENST00000636194 SPRR2AP35326 72 aa2.29□□□□□ -2.04
SCN1A-212ENST00000636194 FLGP20930 4061 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-212ENST00000636194 LCE3BQ5TA77 95 aa2.28□□□□□ -2.04
SCN1A-212ENST00000636194 LCE2BO14633 110 aa2.25□□□□□ -2.05
SCN1A-212ENST00000636194 SPRR2DP22532 72 aa2.24□□□□□ -2.05
SCN1A-212ENST00000636194 KRTAP19-5Q3LI72 72 aa2.24□□□□□ -2.05
SCN1A-212ENST00000636194 SPRR2GQ9BYE4 73 aa2.24□□□□□ -2.05
SCN1A-212ENST00000636194 DNAH2Q9P225 4427 aa2.23□□□□□ -2.05
SCN1A-212ENST00000636194 RYR1P21817 5038 aa2.22□□□□□ -2.05
SCN1A-212ENST00000636194 HUWE1Q7Z6Z7 4374 aaKnown RBP2.22□□□□□ -2.05
SCN1A-212ENST00000636194 LCE3EQ5T5B0 92 aa2.2□□□□□ -2.06
SCN1A-212ENST00000636194 MT1HP80294 61 aa2.17□□□□□ -2.06
SCN1A-212ENST00000636194 KRTAP4-5Q9BYR2 181 aa2.17□□□□□ -2.06
SCN1A-212ENST00000636194 LCE3DQ9BYE3 92 aa2.15□□□□□ -2.07
SCN1A-212ENST00000636194 LCE2CQ5TA81 110 aa2.14□□□□□ -2.07
SCN1A-212ENST00000636194 FRAS1Q86XX4 4008 aa2.14□□□□□ -2.07
SCN1A-212ENST00000636194 UBR4Q5T4S7 5183 aa2.13□□□□□ -2.07
SCN1A-212ENST00000636194 PCLOQ9Y6V0 5065 aa2.13□□□□□ -2.07
SCN1A-212ENST00000636194 SPRR5A0A1B0GTR4 108 aa2.13□□□□□ -2.07
SCN1A-212ENST00000636194 MT2AP02795 61 aa2.11□□□□□ -2.07
SCN1A-212ENST00000636194 PRKDCP78527 4128 aaKnown RBP2.07□□□□□ -2.08
SCN1A-212ENST00000636194 LCE2DQ5TA82 110 aaPredicted RBP2.07□□□□□ -2.08
SCN1A-212ENST00000636194 MT1GP13640 62 aa2.06□□□□□ -2.08
SCN1A-212ENST00000636194 DNHD1Q96M86 4753 aa2.03□□□□□ -2.09
SCN1A-212ENST00000636194 MT1FP04733 61 aa2.02□□□□□ -2.09
SCN1A-212ENST00000636194 HYDINQ4G0P3 5121 aa2.02□□□□□ -2.09
SCN1A-212ENST00000636194 LCE1BQ5T7P3 118 aa2.01□□□□□ -2.09
SCN1A-212ENST00000636194 RYR2Q92736 4967 aa2□□□□□ -2.09
SCN1A-212ENST00000636194 MT4P47944 62 aa1.98□□□□□ -2.09
SCN1A-212ENST00000636194 LCE1DQ5T752 114 aa1.98□□□□□ -2.09
SCN1A-212ENST00000636194 PKHD1P08F94 4074 aa1.98□□□□□ -2.09
SCN1A-212ENST00000636194 RYR3Q15413 4870 aa1.97□□□□□ -2.09
SCN1A-212ENST00000636194 PRM1P04553 51 aa1.96□□□□□ -2.1
SCN1A-212ENST00000636194 FAT2Q9NYQ8 4349 aa1.94□□□□□ -2.1
SCN1A-212ENST00000636194 KRTAP19-8Q3LI54 63 aa1.94□□□□□ -2.1
SCN1A-212ENST00000636194 KRTAP4-1Q9BYQ7 146 aa1.93□□□□□ -2.1
SCN1A-212ENST00000636194 LCE5AQ5TCM9 118 aa1.93□□□□□ -2.1
SCN1A-212ENST00000636194 DNAH10Q8IVF4 4471 aa1.93□□□□□ -2.1
SCN1A-212ENST00000636194 MT1LQ93083 61 aa1.92□□□□□ -2.1
SCN1A-212ENST00000636194 ANK3Q12955 4377 aaKnown RBP1.92□□□□□ -2.1
SCN1A-212ENST00000636194 KRTAP19-3Q7Z4W3 81 aa1.91□□□□□ -2.1
SCN1A-212ENST00000636194 LCE1CQ5T751 118 aa1.91□□□□□ -2.1
SCN1A-212ENST00000636194 LCE1EQ5T753 118 aa1.91□□□□□ -2.1
SCN1A-212ENST00000636194 LCE1FQ5T754 118 aa1.91□□□□□ -2.1
SCN1A-212ENST00000636194 LCE1AQ5T7P2 110 aa1.91□□□□□ -2.1
SCN1A-212ENST00000636194 PKHD1L1Q86WI1 4243 aa1.9□□□□□ -2.11
SCN1A-212ENST00000636194 MT1XP80297 61 aa1.88□□□□□ -2.11
SCN1A-212ENST00000636194 KRTAP19-1Q8IUB9 90 aa1.87□□□□□ -2.11
SCN1A-212ENST00000636194 LRP1Q07954 4544 aaKnown RBP1.87□□□□□ -2.11
SCN1A-212ENST00000636194 DNAH17Q9UFH2 4485 aa1.86□□□□□ -2.11
SCN1A-212ENST00000636194 ABCA13Q86UQ4 5058 aa1.85□□□□□ -2.11
SCN1A-212ENST00000636194 VPS13DQ5THJ4 4388 aa1.84□□□□□ -2.11
SCN1A-212ENST00000636194 EPPK1P58107 5090 aaKnown RBP1.84□□□□□ -2.11
SCN1A-212ENST00000636194 DNAH8Q96JB1 4490 aa1.84□□□□□ -2.11
SCN1A-212ENST00000636194 BIRC6Q9NR09 4857 aa1.83□□□□□ -2.12
SCN1A-212ENST00000636194 LCE4AQ5TA78 99 aa1.81□□□□□ -2.12
SCN1A-212ENST00000636194 DYNC2H1Q8NCM8 4307 aaKnown RBP1.8□□□□□ -2.12
SCN1A-212ENST00000636194 MT1BP07438 61 aa1.8□□□□□ -2.12
SCN1A-212ENST00000636194 HSPG2P98160 4391 aa1.79□□□□□ -2.12
SCN1A-212ENST00000636194 DNAH11Q96DT5 4516 aa1.79□□□□□ -2.12
SCN1A-212ENST00000636194 MT1EP04732 61 aa1.79□□□□□ -2.12
SCN1A-212ENST00000636194 KRTAP20-1Q3LI63 56 aa1.79□□□□□ -2.12
SCN1A-212ENST00000636194 KMT2CQ8NEZ4 4911 aaKnown RBP1.79□□□□□ -2.12
SCN1A-212ENST00000636194 MT1MQ8N339 61 aa1.78□□□□□ -2.12
SCN1A-212ENST00000636194 RNF213Q63HN8 5207 aa1.76□□□□□ -2.13
SCN1A-212ENST00000636194 KIAA1109Q2LD37 5005 aa1.75□□□□□ -2.13
SCN1A-212ENST00000636194 KRTAP4-8A0A0G2JLE6 195 aa1.75□□□□□ -2.13
SCN1A-212ENST00000636194 KRTAP4-8Q9BYQ9 185 aa1.75□□□□□ -2.13
SCN1A-212ENST00000636194 DNAH9Q9NYC9 4486 aa1.75□□□□□ -2.13
SCN1A-212ENST00000636194 HERC2O95714 4834 aa1.74□□□□□ -2.13
SCN1A-212ENST00000636194 KRTAP9-8Q9BYQ0 159 aa1.72□□□□□ -2.13
SCN1A-212ENST00000636194 KRTAP19-6Q3LI70 58 aa1.72□□□□□ -2.13
SCN1A-212ENST00000636194 APOBP04114 4563 aaKnown RBP1.71□□□□□ -2.14
SCN1A-212ENST00000636194 PKD1P98161 4303 aa1.7□□□□□ -2.14
SCN1A-212ENST00000636194 KRTAP9-3Q9BYQ3 159 aa1.7□□□□□ -2.14
SCN1A-212ENST00000636194 LCE2AQ5TA79 106 aaPredicted RBP1.7□□□□□ -2.14
SCN1A-212ENST00000636194 KRTAP9-2Q9BYQ4 174 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms