RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 ROMO1P60602 79 aa4.37□□□□□ -1.71
HDAC9-229ENST00000622668 KMT2CQ8NEZ4 4911 aaKnown RBP4.36□□□□□ -1.71
HDAC9-229ENST00000622668 A6NN06 94 aa4.35□□□□□ -1.71
HDAC9-229ENST00000622668 SACSQ9NZJ4 4579 aa4.34□□□□□ -1.71
HDAC9-229ENST00000622668 KMT2AQ03164 3969 aa4.34□□□□□ -1.71
HDAC9-229ENST00000622668 LUZP6Q538Z0 58 aa4.31□□□□□ -1.72
HDAC9-229ENST00000622668 DNAH17Q9UFH2 4485 aa4.29□□□□□ -1.72
HDAC9-229ENST00000622668 FAT2Q9NYQ8 4349 aa4.29□□□□□ -1.72
HDAC9-229ENST00000622668 APOBP04114 4563 aaKnown RBP4.29□□□□□ -1.72
HDAC9-229ENST00000622668 KRTAP3-1Q9BYR8 98 aa4.28□□□□□ -1.72
HDAC9-229ENST00000622668 VPS13BQ7Z7G8 4022 aa4.26□□□□□ -1.73
HDAC9-229ENST00000622668 FAT3Q8TDW7 4589 aa4.25□□□□□ -1.73
HDAC9-229ENST00000622668 DNAH2Q9P225 4427 aa4.25□□□□□ -1.73
HDAC9-229ENST00000622668 MYCBP2O75592 4640 aa4.25□□□□□ -1.73
HDAC9-229ENST00000622668 PRAC1Q96KF2 57 aa4.24□□□□□ -1.73
HDAC9-229ENST00000622668 PCLOQ9Y6V0 5065 aa4.23□□□□□ -1.73
HDAC9-229ENST00000622668 KRTAP4-1Q9BYQ7 146 aa4.23□□□□□ -1.73
HDAC9-229ENST00000622668 DYNC2H1Q8NCM8 4307 aaKnown RBP4.22□□□□□ -1.73
HDAC9-229ENST00000622668 LRP1Q07954 4544 aaKnown RBP4.21□□□□□ -1.73
HDAC9-229ENST00000622668 KTN1-AS1Q86SY8 53 aa4.21□□□□□ -1.73
HDAC9-229ENST00000622668 EPPK1P58107 5090 aaKnown RBP4.19□□□□□ -1.74
HDAC9-229ENST00000622668 H0YAA0 97 aa4.19□□□□□ -1.74
HDAC9-229ENST00000622668 DNAH8Q96JB1 4490 aa4.16□□□□□ -1.74
HDAC9-229ENST00000622668 DNAH3Q8TD57 4116 aa4.16□□□□□ -1.74
HDAC9-229ENST00000622668 CMYA5Q8N3K9 4069 aa4.15□□□□□ -1.75
HDAC9-229ENST00000622668 MT1HP80294 61 aa4.15□□□□□ -1.75
HDAC9-229ENST00000622668 LRP2P98164 4655 aa4.13□□□□□ -1.75
HDAC9-229ENST00000622668 KRTAP10-6P60371 365 aaPredicted RBP4.09□□□□□ -1.75
HDAC9-229ENST00000622668 KRTAP25-1Q3LHN0 102 aa4.09□□□□□ -1.75
HDAC9-229ENST00000622668 DNAH6Q9C0G6 4158 aa4.09□□□□□ -1.75
HDAC9-229ENST00000622668 PKHD1P08F94 4074 aa4.09□□□□□ -1.75
HDAC9-229ENST00000622668 ABCA13Q86UQ4 5058 aa4.07□□□□□ -1.76
HDAC9-229ENST00000622668 LORP23490 312 aaPredicted RBP4.06□□□□□ -1.76
HDAC9-229ENST00000622668 HSPG2P98160 4391 aa4.06□□□□□ -1.76
HDAC9-229ENST00000622668 C10orf95Q9H7T3 257 aa4.05□□□□□ -1.76
HDAC9-229ENST00000622668 KRTAP12-2P59991 146 aa4.05□□□□□ -1.76
HDAC9-229ENST00000622668 PP632Q6XCG6 107 aa4.04□□□□□ -1.76
HDAC9-229ENST00000622668 KRTAP3-3Q9BYR6 98 aa4.04□□□□□ -1.76
HDAC9-229ENST00000622668 HERC1Q15751 4861 aa4.03□□□□□ -1.76
HDAC9-229ENST00000622668 MT2AP02795 61 aa4.01□□□□□ -1.77
HDAC9-229ENST00000622668 KRTAP12-1P59990 96 aa4.01□□□□□ -1.77
HDAC9-229ENST00000622668 DNAH7Q8WXX0 4024 aa4□□□□□ -1.77
HDAC9-229ENST00000622668 UBR4Q5T4S7 5183 aa3.99□□□□□ -1.77
HDAC9-229ENST00000622668 KRTAP13-4Q3LI77 160 aa3.98□□□□□ -1.77
HDAC9-229ENST00000622668 FSIP2Q5CZC0 6907 aa3.96□□□□□ -1.78
HDAC9-229ENST00000622668 MT1FP04733 61 aa3.94□□□□□ -1.78
HDAC9-229ENST00000622668 KRTAP3-2Q9BYR7 98 aa3.93□□□□□ -1.78
HDAC9-229ENST00000622668 KRTAP10-12P60413 245 aa3.9□□□□□ -1.78
HDAC9-229ENST00000622668 KRTAP8-1Q8IUC2 63 aa3.9□□□□□ -1.79
HDAC9-229ENST00000622668 HECTD4Q9Y4D8 3996 aa3.85□□□□□ -1.79
HDAC9-229ENST00000622668 PKD1P98161 4303 aa3.83□□□□□ -1.8
HDAC9-229ENST00000622668 CRCT1Q9UGL9 99 aa3.83□□□□□ -1.8
HDAC9-229ENST00000622668 FRAS1Q86XX4 4008 aa3.83□□□□□ -1.8
HDAC9-229ENST00000622668 RNF213Q63HN8 5207 aa3.82□□□□□ -1.8
HDAC9-229ENST00000622668 KRTAP15-1Q3LI76 137 aa3.81□□□□□ -1.8
HDAC9-229ENST00000622668 H3BS24 57 aa3.8□□□□□ -1.8
HDAC9-229ENST00000622668 LPAP08519 4548 aa3.8□□□□□ -1.8
HDAC9-229ENST00000622668 KRTAP9-2Q9BYQ4 174 aa3.78□□□□□ -1.8
HDAC9-229ENST00000622668 SPRR2FQ96RM1 72 aa3.77□□□□□ -1.81
HDAC9-229ENST00000622668 LCE2CQ5TA81 110 aa3.77□□□□□ -1.81
HDAC9-229ENST00000622668 SPRR2GQ9BYE4 73 aa3.77□□□□□ -1.81
HDAC9-229ENST00000622668 PKHD1L1Q86WI1 4243 aa3.75□□□□□ -1.81
HDAC9-229ENST00000622668 A0A0A0MQY5 61 aa3.75□□□□□ -1.81
HDAC9-229ENST00000622668 KRTAP9-8Q9BYQ0 159 aa3.72□□□□□ -1.81
HDAC9-229ENST00000622668 KRTAP12-3P60328 96 aa3.7□□□□□ -1.82
HDAC9-229ENST00000622668 FAT4Q6V0I7 4981 aa3.7□□□□□ -1.82
HDAC9-229ENST00000622668 HMCN2Q8NDA2 5059 aa3.68□□□□□ -1.82
HDAC9-229ENST00000622668 LCE3AQ5TA76 89 aa3.67□□□□□ -1.82
HDAC9-229ENST00000622668 KRTAP19-1Q8IUB9 90 aa3.65□□□□□ -1.82
HDAC9-229ENST00000622668 LCE2DQ5TA82 110 aaPredicted RBP3.64□□□□□ -1.83
HDAC9-229ENST00000622668 NDUFAF8A1L188 74 aa3.63□□□□□ -1.83
HDAC9-229ENST00000622668 KRTAP9-6A0A140TA67 174 aa3.63□□□□□ -1.83
HDAC9-229ENST00000622668 LCE2AQ5TA79 106 aaPredicted RBP3.62□□□□□ -1.83
HDAC9-229ENST00000622668 KRTAP9-3Q9BYQ3 159 aa3.61□□□□□ -1.83
HDAC9-229ENST00000622668 KRTAP19-2Q3LHN2 52 aa3.61□□□□□ -1.83
HDAC9-229ENST00000622668 KRTAP19-8Q3LI54 63 aa3.58□□□□□ -1.84
HDAC9-229ENST00000622668 SPRR2EP22531 72 aa3.57□□□□□ -1.84
HDAC9-229ENST00000622668 SPRR2BP35325 72 aa3.57□□□□□ -1.84
HDAC9-229ENST00000622668 SPRR2AP35326 72 aa3.57□□□□□ -1.84
HDAC9-229ENST00000622668 MUC2Q02817 5179 aa3.57□□□□□ -1.84
HDAC9-229ENST00000622668 LCE2BO14633 110 aa3.56□□□□□ -1.84
HDAC9-229ENST00000622668 KRTAP10-5P60370 271 aa3.56□□□□□ -1.84
HDAC9-229ENST00000622668 MT1BP07438 61 aa3.55□□□□□ -1.84
HDAC9-229ENST00000622668 TNXBP22105 4242 aa3.55□□□□□ -1.84
HDAC9-229ENST00000622668 MUC17Q685J3 4493 aa3.5□□□□□ -1.85
HDAC9-229ENST00000622668 KRTAP10-7P60409 375 aaPredicted RBP3.49□□□□□ -1.85
HDAC9-229ENST00000622668 KRTAP19-5Q3LI72 72 aa3.46□□□□□ -1.86
HDAC9-229ENST00000622668 MT1XP80297 61 aa3.46□□□□□ -1.86
HDAC9-229ENST00000622668 SPRR2DP22532 72 aa3.45□□□□□ -1.86
HDAC9-229ENST00000622668 KRTAP4-8A0A0G2JLE6 195 aa3.44□□□□□ -1.86
HDAC9-229ENST00000622668 KRTAP4-8Q9BYQ9 185 aa3.44□□□□□ -1.86
HDAC9-229ENST00000622668 SYNE1Q8NF91 8797 aaKnown RBP3.43□□□□□ -1.86
HDAC9-229ENST00000622668 FLGP20930 4061 aaPredicted RBP3.42□□□□□ -1.86
HDAC9-229ENST00000622668 KRTAP23-1A1A580 65 aa3.41□□□□□ -1.86
HDAC9-229ENST00000622668 KRTAP19-6Q3LI70 58 aa3.39□□□□□ -1.87
HDAC9-229ENST00000622668 KRTAP9-7A8MTY7 169 aa3.38□□□□□ -1.87
HDAC9-229ENST00000622668 SYNE2Q8WXH0 6885 aaKnown RBP3.34□□□□□ -1.87
HDAC9-229ENST00000622668 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.27□□□□□ -1.89
HDAC9-229ENST00000622668 MT1GP13640 62 aa3.24□□□□□ -1.89
HDAC9-229ENST00000622668 LCE3CQ5T5A8 94 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms