RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 FRAS1Q86XX4 4008 aa0.68□□□□□ -2.3
CPNE3-213ENST00000622183 ATMQ13315 3056 aa0.68□□□□□ -2.3
CPNE3-213ENST00000622183 FAT3Q8TDW7 4589 aa0.68□□□□□ -2.3
CPNE3-213ENST00000622183 SETXQ7Z333 2677 aaKnown RBP0.68□□□□□ -2.3
CPNE3-213ENST00000622183 DNAH5Q8TE73 4624 aa0.68□□□□□ -2.3
CPNE3-213ENST00000622183 COL12A1Q99715 3063 aa0.68□□□□□ -2.3
CPNE3-213ENST00000622183 SPTBN5Q9NRC6 3674 aaKnown RBP0.68□□□□□ -2.3
CPNE3-213ENST00000622183 HECTD4Q9Y4D8 3996 aa0.68□□□□□ -2.3
CPNE3-213ENST00000622183 TRRAPQ9Y4A5 3859 aa0.67□□□□□ -2.3
CPNE3-213ENST00000622183 PLECQ15149 4684 aaKnown RBP0.67□□□□□ -2.3
CPNE3-213ENST00000622183 A0A096LPF7 62 aa0.67□□□□□ -2.3
CPNE3-213ENST00000622183 CELSR3Q9NYQ7 3312 aa0.67□□□□□ -2.3
CPNE3-213ENST00000622183 TACC2O95359 2948 aa0.67□□□□□ -2.3
CPNE3-213ENST00000622183 TEP1Q99973 2627 aaKnown RBP0.67□□□□□ -2.3
CPNE3-213ENST00000622183 GCN1Q92616 2671 aaKnown RBP0.66□□□□□ -2.3
CPNE3-213ENST00000622183 A0A096LNI7 61 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 ZZEF1O43149 2961 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 SPART-AS1P0CW21 52 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 CSMD1Q96PZ7 3565 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 HIVEP1P15822 2718 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 LRP1Q07954 4544 aaKnown RBP0.66□□□□□ -2.3
CPNE3-213ENST00000622183 SZT2Q5T011 3432 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 C5orf42Q9H799 3197 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 CHD8Q9HCK8 2581 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 DMXL2Q8TDJ6 3036 aa0.66□□□□□ -2.3
CPNE3-213ENST00000622183 KRTAP21-1Q3LI58 79 aa0.65□□□□□ -2.31
CPNE3-213ENST00000622183 DNAH9Q9NYC9 4486 aa0.65□□□□□ -2.31
CPNE3-213ENST00000622183 DNAH17Q9UFH2 4485 aa0.65□□□□□ -2.31
CPNE3-213ENST00000622183 UTP20O75691 2785 aaKnown RBP0.65□□□□□ -2.31
CPNE3-213ENST00000622183 DNAH12Q6ZR08 3092 aa0.65□□□□□ -2.31
CPNE3-213ENST00000622183 SPG11Q96JI7 2443 aa0.65□□□□□ -2.31
CPNE3-213ENST00000622183 USP9XQ93008 2570 aaPredicted RBP0.64□□□□□ -2.31
CPNE3-213ENST00000622183 WDFY4Q6ZS81 3184 aa0.64□□□□□ -2.31
CPNE3-213ENST00000622183 ANKHD1Q8IWZ3 2542 aaKnown RBP0.64□□□□□ -2.31
CPNE3-213ENST00000622183 DMXL1Q9Y485 3027 aa0.64□□□□□ -2.31
CPNE3-213ENST00000622183 CFAP47Q6ZTR5 3102 aa0.64□□□□□ -2.31
CPNE3-213ENST00000622183 SRCAPQ6ZRS2 3230 aa0.64□□□□□ -2.31
CPNE3-213ENST00000622183 ZANQ9Y493 2812 aa0.64□□□□□ -2.31
CPNE3-213ENST00000622183 SONP18583 2426 aaKnown RBP0.64□□□□□ -2.31
CPNE3-213ENST00000622183 VPS13AQ96RL7 3174 aa0.63□□□□□ -2.31
CPNE3-213ENST00000622183 LAMA3Q16787 3333 aa0.63□□□□□ -2.31
CPNE3-213ENST00000622183 FREM2Q5SZK8 3169 aa0.63□□□□□ -2.31
CPNE3-213ENST00000622183 PRM1P04553 51 aa0.63□□□□□ -2.31
CPNE3-213ENST00000622183 APOBP04114 4563 aaKnown RBP0.63□□□□□ -2.31
CPNE3-213ENST00000622183 CUBNO60494 3623 aa0.63□□□□□ -2.31
CPNE3-213ENST00000622183 MKI67P46013 3256 aaKnown RBP0.63□□□□□ -2.31
CPNE3-213ENST00000622183 DCHS1Q96JQ0 3298 aa0.63□□□□□ -2.31
CPNE3-213ENST00000622183 ACANP16112 2415 aa0.63□□□□□ -2.31
CPNE3-213ENST00000622183 ACACBO00763 2458 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 PKD1L1Q8TDX9 2849 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 CFAP46Q8IYW2 2715 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 UNC79Q9P2D8 2635 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 MTORP42345 2549 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 NBEAL2Q6ZNJ1 2754 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 KRTAP19-5Q3LI72 72 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 LPAP08519 4548 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 XIRP2A4UGR9 3374 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 TGP01266 2768 aa0.62□□□□□ -2.31
CPNE3-213ENST00000622183 ANKRD11Q6UB99 2663 aaPredicted RBP0.61□□□□□ -2.31
CPNE3-213ENST00000622183 CENPEQ02224 2701 aa0.61□□□□□ -2.31
CPNE3-213ENST00000622183 USP34Q70CQ2 3546 aa0.61□□□□□ -2.31
CPNE3-213ENST00000622183 TLN2Q9Y4G6 2542 aa0.61□□□□□ -2.31
CPNE3-213ENST00000622183 KALRNO60229 2985 aa0.61□□□□□ -2.31
CPNE3-213ENST00000622183 SPEGQ15772 3267 aa0.6□□□□□ -2.31
CPNE3-213ENST00000622183 MT1AP04731 61 aa0.6□□□□□ -2.31
CPNE3-213ENST00000622183 DEFB133Q30KQ1 61 aa0.6□□□□□ -2.31
CPNE3-213ENST00000622183 ITPR2Q14571 2701 aa0.6□□□□□ -2.31
CPNE3-213ENST00000622183 MUC3AQ02505 3323 aa0.6□□□□□ -2.31
CPNE3-213ENST00000622183 MXRA5Q9NR99 2828 aa0.6□□□□□ -2.31
CPNE3-213ENST00000622183 LAMA1P25391 3075 aa0.59□□□□□ -2.31
CPNE3-213ENST00000622183 SMR3BP02814 79 aaPredicted RBP0.59□□□□□ -2.31
CPNE3-213ENST00000622183 UTRNP46939 3433 aa0.58□□□□□ -2.32
CPNE3-213ENST00000622183 GOLGB1Q14789 3259 aaKnown RBP0.58□□□□□ -2.32
CPNE3-213ENST00000622183 CSMD2Q7Z408 3487 aa0.58□□□□□ -2.32
CPNE3-213ENST00000622183 VPS13CQ709C8 3753 aa0.58□□□□□ -2.32
CPNE3-213ENST00000622183 U3KQA8 63 aa0.58□□□□□ -2.32
CPNE3-213ENST00000622183 DYNC1H1Q14204 4646 aaKnown RBP0.58□□□□□ -2.32
CPNE3-213ENST00000622183 TEX15Q9BXT5 2789 aa0.58□□□□□ -2.32
CPNE3-213ENST00000622183 SYNE1Q8NF91 8797 aaKnown RBP0.58□□□□□ -2.32
CPNE3-213ENST00000622183 FLNBO75369 2602 aaKnown RBP0.58□□□□□ -2.32
CPNE3-213ENST00000622183 LOC400499M0QZD8 3231 aa0.58□□□□□ -2.32
CPNE3-213ENST00000622183 SVEP1Q4LDE5 3571 aa0.57□□□□□ -2.32
CPNE3-213ENST00000622183 FLNAP21333 2647 aaKnown RBP0.57□□□□□ -2.32
CPNE3-213ENST00000622183 NBEAL1Q6ZS30 2694 aa0.57□□□□□ -2.32
CPNE3-213ENST00000622183 DOPEY1Q5JWR5 2465 aa0.57□□□□□ -2.32
CPNE3-213ENST00000622183 CD52P31358 61 aa0.57□□□□□ -2.32
CPNE3-213ENST00000622183 SPRR2BP35325 72 aa0.57□□□□□ -2.32
CPNE3-213ENST00000622183 FASNP49327 2511 aaKnown RBP0.57□□□□□ -2.32
CPNE3-213ENST00000622183 ZFYVE26Q68DK2 2539 aa0.57□□□□□ -2.32
CPNE3-213ENST00000622183 MYO18BQ8IUG5 2567 aa0.56□□□□□ -2.32
CPNE3-213ENST00000622183 FAT1Q14517 4588 aa0.56□□□□□ -2.32
CPNE3-213ENST00000622183 TLN1Q9Y490 2541 aaKnown RBP0.56□□□□□ -2.32
CPNE3-213ENST00000622183 SPRR2DP22532 72 aa0.56□□□□□ -2.32
CPNE3-213ENST00000622183 AHNAK2Q8IVF2 5795 aa0.56□□□□□ -2.32
CPNE3-213ENST00000622183 MUC17Q685J3 4493 aa0.55□□□□□ -2.32
CPNE3-213ENST00000622183 HRNRQ86YZ3 2850 aaPredicted RBP0.55□□□□□ -2.32
CPNE3-213ENST00000622183 EP400Q96L91 3159 aa0.55□□□□□ -2.32
CPNE3-213ENST00000622183 SPRR2AP35326 72 aa0.54□□□□□ -2.32
CPNE3-213ENST00000622183 MYO15AQ9UKN7 3530 aa0.54□□□□□ -2.32
CPNE3-213ENST00000622183 CEP295Q9C0D2 2601 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms