RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 DNAH7Q8WXX0 4024 aa2.33□□□□□ -2.04
VPS13D-214ENST00000620676 KRTAP10-10P60014 251 aa2.33□□□□□ -2.04
VPS13D-214ENST00000620676 MUC3AQ02505 3323 aa2.32□□□□□ -2.04
VPS13D-214ENST00000620676 ALMS1Q8TCU4 4167 aa2.3□□□□□ -2.04
VPS13D-214ENST00000620676 INE1O15225 51 aa2.3□□□□□ -2.04
VPS13D-214ENST00000620676 ZNF469Q96JG9 3925 aaPredicted RBP2.27□□□□□ -2.05
VPS13D-214ENST00000620676 FLGP20930 4061 aaPredicted RBP2.26□□□□□ -2.05
VPS13D-214ENST00000620676 LORP23490 312 aaPredicted RBP2.25□□□□□ -2.05
VPS13D-214ENST00000620676 DNAH10Q8IVF4 4471 aa2.24□□□□□ -2.05
VPS13D-214ENST00000620676 CRCT1Q9UGL9 99 aa2.23□□□□□ -2.05
VPS13D-214ENST00000620676 DYNC2H1Q8NCM8 4307 aaKnown RBP2.21□□□□□ -2.06
VPS13D-214ENST00000620676 LCE3AQ5TA76 89 aa2.19□□□□□ -2.06
VPS13D-214ENST00000620676 DNAH11Q96DT5 4516 aa2.16□□□□□ -2.06
VPS13D-214ENST00000620676 PKHD1L1Q86WI1 4243 aa2.14□□□□□ -2.07
VPS13D-214ENST00000620676 KRTAP12-3P60328 96 aa2.13□□□□□ -2.07
VPS13D-214ENST00000620676 VPS13DQ5THJ4 4388 aa2.11□□□□□ -2.07
VPS13D-214ENST00000620676 KMT2AQ03164 3969 aa2.09□□□□□ -2.07
VPS13D-214ENST00000620676 KRTAP10-5P60370 271 aa2.09□□□□□ -2.07
VPS13D-214ENST00000620676 KRTAP10-12P60413 245 aa2.09□□□□□ -2.07
VPS13D-214ENST00000620676 PKHD1P08F94 4074 aa2.09□□□□□ -2.08
VPS13D-214ENST00000620676 DNAH8Q96JB1 4490 aa2.08□□□□□ -2.08
VPS13D-214ENST00000620676 ANK3Q12955 4377 aaKnown RBP2.08□□□□□ -2.08
VPS13D-214ENST00000620676 DNAH2Q9P225 4427 aa2.08□□□□□ -2.08
VPS13D-214ENST00000620676 LYSTQ99698 3801 aa2.08□□□□□ -2.08
VPS13D-214ENST00000620676 DNAH17Q9UFH2 4485 aa2.07□□□□□ -2.08
VPS13D-214ENST00000620676 KRTAP10-4P60372 401 aaPredicted RBP2.07□□□□□ -2.08
VPS13D-214ENST00000620676 PLECQ15149 4684 aaKnown RBP2.06□□□□□ -2.08
VPS13D-214ENST00000620676 RYR1P21817 5038 aa2.04□□□□□ -2.08
VPS13D-214ENST00000620676 DYNC1H1Q14204 4646 aaKnown RBP2.04□□□□□ -2.08
VPS13D-214ENST00000620676 DNAH9Q9NYC9 4486 aa2.04□□□□□ -2.08
VPS13D-214ENST00000620676 MT1HL1P0DM35 61 aa2.03□□□□□ -2.08
VPS13D-214ENST00000620676 SACSQ9NZJ4 4579 aa2.03□□□□□ -2.08
VPS13D-214ENST00000620676 KRTAP4-5Q9BYR2 181 aa2.02□□□□□ -2.09
VPS13D-214ENST00000620676 FAT3Q8TDW7 4589 aa2□□□□□ -2.09
VPS13D-214ENST00000620676 FAT2Q9NYQ8 4349 aa1.99□□□□□ -2.09
VPS13D-214ENST00000620676 KRTAP4-1Q9BYQ7 146 aa1.99□□□□□ -2.09
VPS13D-214ENST00000620676 PKD1P98161 4303 aa1.98□□□□□ -2.09
VPS13D-214ENST00000620676 LRP1Q07954 4544 aaKnown RBP1.96□□□□□ -2.1
VPS13D-214ENST00000620676 PCLOQ9Y6V0 5065 aa1.96□□□□□ -2.1
VPS13D-214ENST00000620676 RYR2Q92736 4967 aa1.96□□□□□ -2.1
VPS13D-214ENST00000620676 TNXBP22105 4242 aa1.96□□□□□ -2.1
VPS13D-214ENST00000620676 KRTAP19-5Q3LI72 72 aa1.95□□□□□ -2.1
VPS13D-214ENST00000620676 HYDINQ4G0P3 5121 aa1.94□□□□□ -2.1
VPS13D-214ENST00000620676 SPRR5A0A1B0GTR4 108 aa1.94□□□□□ -2.1
VPS13D-214ENST00000620676 MT3P25713 68 aa1.94□□□□□ -2.1
VPS13D-214ENST00000620676 BIRC6Q9NR09 4857 aa1.93□□□□□ -2.1
VPS13D-214ENST00000620676 DNAH5Q8TE73 4624 aa1.93□□□□□ -2.1
VPS13D-214ENST00000620676 LCE3CQ5T5A8 94 aa1.92□□□□□ -2.1
VPS13D-214ENST00000620676 DNHD1Q96M86 4753 aa1.91□□□□□ -2.1
VPS13D-214ENST00000620676 APOBP04114 4563 aaKnown RBP1.89□□□□□ -2.11
VPS13D-214ENST00000620676 LRP1BQ9NZR2 4599 aa1.88□□□□□ -2.11
VPS13D-214ENST00000620676 KRTAP12-4P60329 112 aa1.88□□□□□ -2.11
VPS13D-214ENST00000620676 KRTAP10-7P60409 375 aaPredicted RBP1.88□□□□□ -2.11
VPS13D-214ENST00000620676 HSPG2P98160 4391 aa1.88□□□□□ -2.11
VPS13D-214ENST00000620676 GPR98Q8WXG9 6306 aa1.86□□□□□ -2.11
VPS13D-214ENST00000620676 MDN1Q9NU22 5596 aa1.84□□□□□ -2.11
VPS13D-214ENST00000620676 LCE3BQ5TA77 95 aa1.84□□□□□ -2.11
VPS13D-214ENST00000620676 SPRR2GQ9BYE4 73 aa1.84□□□□□ -2.12
VPS13D-214ENST00000620676 MYCBP2O75592 4640 aa1.84□□□□□ -2.12
VPS13D-214ENST00000620676 KIAA1109Q2LD37 5005 aa1.83□□□□□ -2.12
VPS13D-214ENST00000620676 KRTAP17-1Q9BYP8 105 aa1.82□□□□□ -2.12
VPS13D-214ENST00000620676 ABCA13Q86UQ4 5058 aa1.82□□□□□ -2.12
VPS13D-214ENST00000620676 MT1FP04733 61 aa1.81□□□□□ -2.12
VPS13D-214ENST00000620676 KRTAP4-7Q9BYR0 210 aa1.8□□□□□ -2.12
VPS13D-214ENST00000620676 MT2AP02795 61 aa1.8□□□□□ -2.12
VPS13D-214ENST00000620676 KRTAP8-1Q8IUC2 63 aa1.79□□□□□ -2.12
VPS13D-214ENST00000620676 FAT1Q14517 4588 aa1.79□□□□□ -2.12
VPS13D-214ENST00000620676 RYR3Q15413 4870 aa1.77□□□□□ -2.13
VPS13D-214ENST00000620676 MT1GP13640 62 aa1.77□□□□□ -2.13
VPS13D-214ENST00000620676 MT1HP80294 61 aa1.76□□□□□ -2.13
VPS13D-214ENST00000620676 MT1XP80297 61 aa1.75□□□□□ -2.13
VPS13D-214ENST00000620676 LCE2CQ5TA81 110 aa1.74□□□□□ -2.13
VPS13D-214ENST00000620676 AHNAK2Q8IVF2 5795 aa1.74□□□□□ -2.13
VPS13D-214ENST00000620676 NEBP20929 6669 aa1.73□□□□□ -2.13
VPS13D-214ENST00000620676 KRTAP19-1Q8IUB9 90 aa1.73□□□□□ -2.13
VPS13D-214ENST00000620676 LOC100996750A0A140TA64 210 aa1.73□□□□□ -2.13
VPS13D-214ENST00000620676 STARD9Q9P2P6 4700 aa1.73□□□□□ -2.13
VPS13D-214ENST00000620676 HERC2O95714 4834 aa1.72□□□□□ -2.13
VPS13D-214ENST00000620676 RNF213Q63HN8 5207 aa1.72□□□□□ -2.13
VPS13D-214ENST00000620676 KRTAP4-8A0A0G2JLE6 195 aa1.72□□□□□ -2.13
VPS13D-214ENST00000620676 KRTAP4-8Q9BYQ9 185 aa1.72□□□□□ -2.13
VPS13D-214ENST00000620676 LRP2P98164 4655 aa1.71□□□□□ -2.14
VPS13D-214ENST00000620676 EPPK1P58107 5090 aaKnown RBP1.7□□□□□ -2.14
VPS13D-214ENST00000620676 UBR4Q5T4S7 5183 aa1.7□□□□□ -2.14
VPS13D-214ENST00000620676 KMT2CQ8NEZ4 4911 aaKnown RBP1.7□□□□□ -2.14
VPS13D-214ENST00000620676 KRTAP19-2Q3LHN2 52 aa1.7□□□□□ -2.14
VPS13D-214ENST00000620676 PRM1P04553 51 aa1.7□□□□□ -2.14
VPS13D-214ENST00000620676 SYNE2Q8WXH0 6885 aaKnown RBP1.7□□□□□ -2.14
VPS13D-214ENST00000620676 HMCN2Q8NDA2 5059 aa1.69□□□□□ -2.14
VPS13D-214ENST00000620676 KRTAP4-9Q9BYQ8 210 aa1.69□□□□□ -2.14
VPS13D-214ENST00000620676 KRTAP19-8Q3LI54 63 aa1.69□□□□□ -2.14
VPS13D-214ENST00000620676 KMT2DO14686 5537 aa1.69□□□□□ -2.14
VPS13D-214ENST00000620676 LCE1AQ5T7P2 110 aa1.67□□□□□ -2.14
VPS13D-214ENST00000620676 KRTAP4-3Q9BYR4 195 aa1.67□□□□□ -2.14
VPS13D-214ENST00000620676 MACF1Q9UPN3 7388 aaKnown RBP1.65□□□□□ -2.15
VPS13D-214ENST00000620676 SPRR2FQ96RM1 72 aa1.64□□□□□ -2.15
VPS13D-214ENST00000620676 MT1BP07438 61 aa1.63□□□□□ -2.15
VPS13D-214ENST00000620676 LCE3DQ9BYE3 92 aa1.62□□□□□ -2.15
VPS13D-214ENST00000620676 HERC1Q15751 4861 aa1.62□□□□□ -2.15
VPS13D-214ENST00000620676 KRTAP9-6A0A140TA67 174 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms