RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 PRAC1Q96KF2 57 aa9.12□□□□□ -0.95
PCDHGC3-205ENST00000617641 LINC01558Q9Y6Z2 57 aa9.11□□□□□ -0.95
PCDHGC3-205ENST00000617641 KRTAP3-1Q9BYR8 98 aa9.08□□□□□ -0.96
PCDHGC3-205ENST00000617641 BIRC6Q9NR09 4857 aa9.07□□□□□ -0.96
PCDHGC3-205ENST00000617641 TPRXLQ17RH7 258 aa9.06□□□□□ -0.96
PCDHGC3-205ENST00000617641 HERC2O95714 4834 aa9.05□□□□□ -0.96
PCDHGC3-205ENST00000617641 J3QL48 77 aa9□□□□□ -0.97
PCDHGC3-205ENST00000617641 ADM2Q7Z4H4 148 aa9□□□□□ -0.97
PCDHGC3-205ENST00000617641 COX6B2Q6YFQ2 88 aa9□□□□□ -0.97
PCDHGC3-205ENST00000617641 LPAP08519 4548 aa9□□□□□ -0.97
PCDHGC3-205ENST00000617641 LRP2P98164 4655 aa8.97□□□□□ -0.97
PCDHGC3-205ENST00000617641 A0A1B0GU69 56 aa8.9□□□□□ -0.98
PCDHGC3-205ENST00000617641 CSAG1Q6PB30 78 aa8.76□□□□□ -1.01
PCDHGC3-205ENST00000617641 PCLOQ9Y6V0 5065 aa8.74□□□□□ -1.01
PCDHGC3-205ENST00000617641 SEC61BP60468 96 aaKnown RBP8.73□□□□□ -1.01
PCDHGC3-205ENST00000617641 KRTAP3-3Q9BYR6 98 aa8.73□□□□□ -1.01
PCDHGC3-205ENST00000617641 S4R3F8 94 aa8.72□□□□□ -1.01
PCDHGC3-205ENST00000617641 H1FX-AS1Q4G0G2 97 aa8.7□□□□□ -1.02
PCDHGC3-205ENST00000617641 UQCR11O14957 56 aa8.66□□□□□ -1.02
PCDHGC3-205ENST00000617641 SPATA8Q6RVD6 105 aa8.64□□□□□ -1.03
PCDHGC3-205ENST00000617641 KRTAP4-1Q9BYQ7 146 aa8.64□□□□□ -1.03
PCDHGC3-205ENST00000617641 MUC17Q685J3 4493 aa8.63□□□□□ -1.03
PCDHGC3-205ENST00000617641 ROMO1P60602 79 aa8.61□□□□□ -1.03
PCDHGC3-205ENST00000617641 MIR22HGQ0VDD5 57 aa8.61□□□□□ -1.03
PCDHGC3-205ENST00000617641 HERC1Q15751 4861 aa8.6□□□□□ -1.03
PCDHGC3-205ENST00000617641 A0A1B0GU33 70 aa8.54□□□□□ -1.04
PCDHGC3-205ENST00000617641 A0A0A0MQY5 61 aa8.52□□□□□ -1.05
PCDHGC3-205ENST00000617641 HMCN2Q8NDA2 5059 aa8.52□□□□□ -1.05
PCDHGC3-205ENST00000617641 H0YAA0 97 aa8.49□□□□□ -1.05
PCDHGC3-205ENST00000617641 KRTAP10-6P60371 365 aaPredicted RBP8.49□□□□□ -1.05
PCDHGC3-205ENST00000617641 KRTAP3-2Q9BYR7 98 aa8.49□□□□□ -1.05
PCDHGC3-205ENST00000617641 KRTAP25-1Q3LHN0 102 aa8.42□□□□□ -1.06
PCDHGC3-205ENST00000617641 P0C880 135 aa8.41□□□□□ -1.06
PCDHGC3-205ENST00000617641 KRTAP19-2Q3LHN2 52 aa8.41□□□□□ -1.06
PCDHGC3-205ENST00000617641 MUC2Q02817 5179 aa8.39□□□□□ -1.07
PCDHGC3-205ENST00000617641 KRTAP13-4Q3LI77 160 aa8.34□□□□□ -1.07
PCDHGC3-205ENST00000617641 A0A0D9SG42 100 aa8.23□□□□□ -1.09
PCDHGC3-205ENST00000617641 FLGP20930 4061 aaPredicted RBP8.21□□□□□ -1.09
PCDHGC3-205ENST00000617641 UBR4Q5T4S7 5183 aa8.14□□□□□ -1.11
PCDHGC3-205ENST00000617641 RNF213Q63HN8 5207 aa8.13□□□□□ -1.11
PCDHGC3-205ENST00000617641 M0QZ58 72 aa8.12□□□□□ -1.11
PCDHGC3-205ENST00000617641 K7ERS5 55 aa8.12□□□□□ -1.11
PCDHGC3-205ENST00000617641 LCE2CQ5TA81 110 aa8.11□□□□□ -1.11
PCDHGC3-205ENST00000617641 LORP23490 312 aaPredicted RBP8.08□□□□□ -1.12
PCDHGC3-205ENST00000617641 NDUFAF8A1L188 74 aa8.06□□□□□ -1.12
PCDHGC3-205ENST00000617641 R4GN34 69 aa8.05□□□□□ -1.12
PCDHGC3-205ENST00000617641 KRTAP12-2P59991 146 aa8.02□□□□□ -1.13
PCDHGC3-205ENST00000617641 FAT4Q6V0I7 4981 aa8.02□□□□□ -1.13
PCDHGC3-205ENST00000617641 KRTAP12-1P59990 96 aa8□□□□□ -1.13
PCDHGC3-205ENST00000617641 SPINT4Q6UDR6 99 aa7.98□□□□□ -1.13
PCDHGC3-205ENST00000617641 CRIPTQ9P021 101 aa7.98□□□□□ -1.13
PCDHGC3-205ENST00000617641 MT1HP80294 61 aa7.92□□□□□ -1.14
PCDHGC3-205ENST00000617641 KRTAP15-1Q3LI76 137 aa7.9□□□□□ -1.14
PCDHGC3-205ENST00000617641 M0R2T5 61 aa7.89□□□□□ -1.15
PCDHGC3-205ENST00000617641 LUZP6Q538Z0 58 aa7.8□□□□□ -1.16
PCDHGC3-205ENST00000617641 MT2AP02795 61 aa7.68□□□□□ -1.18
PCDHGC3-205ENST00000617641 KRTAP9-8Q9BYQ0 159 aa7.67□□□□□ -1.18
PCDHGC3-205ENST00000617641 MT1FP04733 61 aa7.66□□□□□ -1.18
PCDHGC3-205ENST00000617641 KRTAP10-10P60014 251 aa7.63□□□□□ -1.19
PCDHGC3-205ENST00000617641 KRTAP19-1Q8IUB9 90 aa7.62□□□□□ -1.19
PCDHGC3-205ENST00000617641 SPRR2GQ9BYE4 73 aa7.62□□□□□ -1.19
PCDHGC3-205ENST00000617641 CAMK2N1Q7Z7J9 78 aa7.58□□□□□ -1.2
PCDHGC3-205ENST00000617641 C10orf95Q9H7T3 257 aa7.57□□□□□ -1.2
PCDHGC3-205ENST00000617641 PLAC4Q8WY50 150 aa7.43□□□□□ -1.22
PCDHGC3-205ENST00000617641 LCE2AQ5TA79 106 aaPredicted RBP7.38□□□□□ -1.23
PCDHGC3-205ENST00000617641 KRTAP19-8Q3LI54 63 aa7.37□□□□□ -1.23
PCDHGC3-205ENST00000617641 KRTAP9-3Q9BYQ3 159 aa7.37□□□□□ -1.23
PCDHGC3-205ENST00000617641 MT1BP07438 61 aa7.3□□□□□ -1.24
PCDHGC3-205ENST00000617641 TNP1P09430 55 aa7.23□□□□□ -1.25
PCDHGC3-205ENST00000617641 LCE2BO14633 110 aa7.15□□□□□ -1.26
PCDHGC3-205ENST00000617641 MT1XP80297 61 aa7.13□□□□□ -1.27
PCDHGC3-205ENST00000617641 KRTAP10-5P60370 271 aa7.12□□□□□ -1.27
PCDHGC3-205ENST00000617641 PP632Q6XCG6 107 aa7.12□□□□□ -1.27
PCDHGC3-205ENST00000617641 KRTAP23-1A1A580 65 aa7.02□□□□□ -1.29
PCDHGC3-205ENST00000617641 USH2AO75445 5202 aa6.96□□□□□ -1.29
PCDHGC3-205ENST00000617641 LCE3AQ5TA76 89 aa6.94□□□□□ -1.3
PCDHGC3-205ENST00000617641 PRO2289Q9P1D8 64 aa6.94□□□□□ -1.3
PCDHGC3-205ENST00000617641 KRTAP10-7P60409 375 aaPredicted RBP6.89□□□□□ -1.31
PCDHGC3-205ENST00000617641 KRTAP10-12P60413 245 aa6.84□□□□□ -1.31
PCDHGC3-205ENST00000617641 KRTAP8-1Q8IUC2 63 aa6.75□□□□□ -1.33
PCDHGC3-205ENST00000617641 SSPOA2VEC9 5147 aa6.69□□□□□ -1.34
PCDHGC3-205ENST00000617641 KRTAP12-3P60328 96 aa6.62□□□□□ -1.35
PCDHGC3-205ENST00000617641 KMT2DO14686 5537 aa6.61□□□□□ -1.35
PCDHGC3-205ENST00000617641 KRTAP19-6Q3LI70 58 aa6.58□□□□□ -1.36
PCDHGC3-205ENST00000617641 KRTAP4-8A0A0G2JLE6 195 aa6.57□□□□□ -1.36
PCDHGC3-205ENST00000617641 KRTAP4-8Q9BYQ9 185 aa6.57□□□□□ -1.36
PCDHGC3-205ENST00000617641 LCE2DQ5TA82 110 aaPredicted RBP6.55□□□□□ -1.36
PCDHGC3-205ENST00000617641 FSIP2Q5CZC0 6907 aa6.54□□□□□ -1.36
PCDHGC3-205ENST00000617641 KRTAP19-5Q3LI72 72 aa6.52□□□□□ -1.37
PCDHGC3-205ENST00000617641 SPRR5A0A1B0GTR4 108 aa6.47□□□□□ -1.37
PCDHGC3-205ENST00000617641 INE1O15225 51 aa6.47□□□□□ -1.37
PCDHGC3-205ENST00000617641 KRTAP19-7Q3SYF9 63 aa6.36□□□□□ -1.39
PCDHGC3-205ENST00000617641 FCGBPQ9Y6R7 5405 aaPredicted RBP6.34□□□□□ -1.39
PCDHGC3-205ENST00000617641 MT1EP04732 61 aa6.21□□□□□ -1.41
PCDHGC3-205ENST00000617641 KRTAP9-2Q9BYQ4 174 aa6.21□□□□□ -1.42
PCDHGC3-205ENST00000617641 LCE3CQ5T5A8 94 aa6.2□□□□□ -1.42
PCDHGC3-205ENST00000617641 MT1LQ93083 61 aa6.13□□□□□ -1.43
PCDHGC3-205ENST00000617641 KRTAP4-7Q9BYR0 210 aa6.07□□□□□ -1.44
PCDHGC3-205ENST00000617641 CRCT1Q9UGL9 99 aa6.02□□□□□ -1.45
PCDHGC3-205ENST00000617641 MUC12Q9UKN1 5478 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms