RNA–Protein interactions for RNA: ENST00000616247.4

LMO3-235, Transcript of LIM domain only 3, humanhuman

TSL 5 BASIC

Gene LMO3, Length 3,227 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-235ENST00000616247 DNAH17Q9UFH2 4485 aa3.63□□□□□ -1.83
LMO3-235ENST00000616247 KRTAP21-3Q3LHN1 58 aa3.62□□□□□ -1.83
LMO3-235ENST00000616247 COX6B2Q6YFQ2 88 aa3.62□□□□□ -1.83
LMO3-235ENST00000616247 KRTAP1-4P0C5Y4 121 aa3.61□□□□□ -1.83
LMO3-235ENST00000616247 C10orf95Q9H7T3 257 aa3.6□□□□□ -1.83
LMO3-235ENST00000616247 P0C880 135 aa3.6□□□□□ -1.83
LMO3-235ENST00000616247 KRTAP3-1Q9BYR8 98 aa3.59□□□□□ -1.84
LMO3-235ENST00000616247 HYDINQ4G0P3 5121 aa3.58□□□□□ -1.84
LMO3-235ENST00000616247 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
LMO3-235ENST00000616247 DNAH11Q96DT5 4516 aa3.58□□□□□ -1.84
LMO3-235ENST00000616247 RPL37P61927 97 aaKnown RBP3.58□□□□□ -1.84
LMO3-235ENST00000616247 VPS13DQ5THJ4 4388 aa3.57□□□□□ -1.84
LMO3-235ENST00000616247 SEC61BP60468 96 aaKnown RBP3.57□□□□□ -1.84
LMO3-235ENST00000616247 KRTAP4-2Q9BYR5 136 aa3.57□□□□□ -1.84
LMO3-235ENST00000616247 DNAH2Q9P225 4427 aa3.56□□□□□ -1.84
LMO3-235ENST00000616247 LRP1BQ9NZR2 4599 aa3.54□□□□□ -1.84
LMO3-235ENST00000616247 KRTAP4-11Q9BYQ6 195 aa3.53□□□□□ -1.84
LMO3-235ENST00000616247 HECTD4Q9Y4D8 3996 aa3.53□□□□□ -1.84
LMO3-235ENST00000616247 TPRXLQ17RH7 258 aa3.53□□□□□ -1.84
LMO3-235ENST00000616247 DNAH6Q9C0G6 4158 aa3.51□□□□□ -1.85
LMO3-235ENST00000616247 LCE4AQ5TA78 99 aa3.51□□□□□ -1.85
LMO3-235ENST00000616247 SACSQ9NZJ4 4579 aa3.5□□□□□ -1.85
LMO3-235ENST00000616247 KMT2CQ8NEZ4 4911 aaKnown RBP3.5□□□□□ -1.85
LMO3-235ENST00000616247 C20orf166-AS1Q96NR2 134 aa3.5□□□□□ -1.85
LMO3-235ENST00000616247 KRTAP13-4Q3LI77 160 aa3.49□□□□□ -1.85
LMO3-235ENST00000616247 KRTAP9-7A8MTY7 169 aa3.48□□□□□ -1.85
LMO3-235ENST00000616247 KRTAP4-5Q9BYR2 181 aa3.48□□□□□ -1.85
LMO3-235ENST00000616247 LCE5AQ5TCM9 118 aa3.48□□□□□ -1.85
LMO3-235ENST00000616247 FAT2Q9NYQ8 4349 aa3.46□□□□□ -1.86
LMO3-235ENST00000616247 S4R3F8 94 aa3.46□□□□□ -1.86
LMO3-235ENST00000616247 KRTAP10-6P60371 365 aaPredicted RBP3.44□□□□□ -1.86
LMO3-235ENST00000616247 DNAH5Q8TE73 4624 aa3.44□□□□□ -1.86
LMO3-235ENST00000616247 RYR3Q15413 4870 aa3.43□□□□□ -1.86
LMO3-235ENST00000616247 RYR2Q92736 4967 aa3.43□□□□□ -1.86
LMO3-235ENST00000616247 VPS13BQ7Z7G8 4022 aa3.43□□□□□ -1.86
LMO3-235ENST00000616247 PKD1P98161 4303 aa3.43□□□□□ -1.86
LMO3-235ENST00000616247 PKHD1P08F94 4074 aa3.42□□□□□ -1.86
LMO3-235ENST00000616247 KRTAP12-2P59991 146 aa3.42□□□□□ -1.86
LMO3-235ENST00000616247 RPS29P62273 56 aaKnown RBP3.42□□□□□ -1.86
LMO3-235ENST00000616247 KRTAP9-3Q9BYQ3 159 aa3.4□□□□□ -1.86
LMO3-235ENST00000616247 KRTAP10-8P60410 259 aa3.39□□□□□ -1.87
LMO3-235ENST00000616247 FAT1Q14517 4588 aa3.39□□□□□ -1.87
LMO3-235ENST00000616247 KRTAP15-1Q3LI76 137 aa3.38□□□□□ -1.87
LMO3-235ENST00000616247 DYNC1H1Q14204 4646 aaKnown RBP3.36□□□□□ -1.87
LMO3-235ENST00000616247 KRTAP12-1P59990 96 aa3.34□□□□□ -1.87
LMO3-235ENST00000616247 MYCBP2O75592 4640 aa3.34□□□□□ -1.88
LMO3-235ENST00000616247 M0QZ58 72 aa3.32□□□□□ -1.88
LMO3-235ENST00000616247 EPPK1P58107 5090 aaKnown RBP3.32□□□□□ -1.88
LMO3-235ENST00000616247 R4GN34 69 aa3.3□□□□□ -1.88
LMO3-235ENST00000616247 LUZP6Q538Z0 58 aa3.3□□□□□ -1.88
LMO3-235ENST00000616247 APOBP04114 4563 aaKnown RBP3.3□□□□□ -1.88
LMO3-235ENST00000616247 A0A1B0GVY2 172 aa3.28□□□□□ -1.88
LMO3-235ENST00000616247 KRTAP17-1Q9BYP8 105 aa3.27□□□□□ -1.89
LMO3-235ENST00000616247 PLAC4Q8WY50 150 aa3.27□□□□□ -1.89
LMO3-235ENST00000616247 KIAA1109Q2LD37 5005 aa3.25□□□□□ -1.89
LMO3-235ENST00000616247 HSPG2P98160 4391 aa3.24□□□□□ -1.89
LMO3-235ENST00000616247 LRP1Q07954 4544 aaKnown RBP3.24□□□□□ -1.89
LMO3-235ENST00000616247 KRTAP10-4P60372 401 aaPredicted RBP3.23□□□□□ -1.89
LMO3-235ENST00000616247 Q5VSD8 79 aa3.23□□□□□ -1.89
LMO3-235ENST00000616247 CAMK2N1Q7Z7J9 78 aa3.22□□□□□ -1.89
LMO3-235ENST00000616247 RYR1P21817 5038 aa3.22□□□□□ -1.89
LMO3-235ENST00000616247 KRTAP5-3Q6L8H2 238 aa3.19□□□□□ -1.9
LMO3-235ENST00000616247 FAT3Q8TDW7 4589 aa3.17□□□□□ -1.9
LMO3-235ENST00000616247 KRTAP9-8Q9BYQ0 159 aa3.17□□□□□ -1.9
LMO3-235ENST00000616247 KRTAP23-1A1A580 65 aa3.16□□□□□ -1.9
LMO3-235ENST00000616247 PKHD1L1Q86WI1 4243 aa3.16□□□□□ -1.9
LMO3-235ENST00000616247 LRP2P98164 4655 aa3.12□□□□□ -1.91
LMO3-235ENST00000616247 ABCA13Q86UQ4 5058 aa3.12□□□□□ -1.91
LMO3-235ENST00000616247 BIRC6Q9NR09 4857 aa3.11□□□□□ -1.91
LMO3-235ENST00000616247 TNXBP22105 4242 aa3.11□□□□□ -1.91
LMO3-235ENST00000616247 LPAP08519 4548 aa3.1□□□□□ -1.91
LMO3-235ENST00000616247 HERC2O95714 4834 aa3.07□□□□□ -1.92
LMO3-235ENST00000616247 PP632Q6XCG6 107 aa3.05□□□□□ -1.92
LMO3-235ENST00000616247 MT1HL1P0DM35 61 aa3.04□□□□□ -1.92
LMO3-235ENST00000616247 PCLOQ9Y6V0 5065 aa3.03□□□□□ -1.92
LMO3-235ENST00000616247 TNP1P09430 55 aa3.02□□□□□ -1.93
LMO3-235ENST00000616247 HERC1Q15751 4861 aa2.98□□□□□ -1.93
LMO3-235ENST00000616247 KRTAP4-1Q9BYQ7 146 aa2.93□□□□□ -1.94
LMO3-235ENST00000616247 M0R2T5 61 aa2.87□□□□□ -1.95
LMO3-235ENST00000616247 MUC2Q02817 5179 aa2.86□□□□□ -1.95
LMO3-235ENST00000616247 HMCN2Q8NDA2 5059 aa2.86□□□□□ -1.95
LMO3-235ENST00000616247 UBR4Q5T4S7 5183 aa2.82□□□□□ -1.96
LMO3-235ENST00000616247 RNF213Q63HN8 5207 aa2.81□□□□□ -1.96
LMO3-235ENST00000616247 LCE3AQ5TA76 89 aa2.8□□□□□ -1.96
LMO3-235ENST00000616247 PRO2289Q9P1D8 64 aa2.79□□□□□ -1.96
LMO3-235ENST00000616247 SPRR5A0A1B0GTR4 108 aa2.78□□□□□ -1.96
LMO3-235ENST00000616247 MUC17Q685J3 4493 aa2.76□□□□□ -1.97
LMO3-235ENST00000616247 KRTAP19-2Q3LHN2 52 aa2.74□□□□□ -1.97
LMO3-235ENST00000616247 KRTAP10-10P60014 251 aa2.74□□□□□ -1.97
LMO3-235ENST00000616247 FAT4Q6V0I7 4981 aa2.72□□□□□ -1.97
LMO3-235ENST00000616247 INE1O15225 51 aa2.7□□□□□ -1.98
LMO3-235ENST00000616247 HMCN1Q96RW7 5635 aa2.67□□□□□ -1.98
LMO3-235ENST00000616247 KRTAP12-3P60328 96 aa2.66□□□□□ -1.98
LMO3-235ENST00000616247 FLGP20930 4061 aaPredicted RBP2.66□□□□□ -1.98
LMO3-235ENST00000616247 SPRR2GQ9BYE4 73 aa2.64□□□□□ -1.99
LMO3-235ENST00000616247 KRTAP10-12P60413 245 aa2.62□□□□□ -1.99
LMO3-235ENST00000616247 KRTAP8-1Q8IUC2 63 aa2.61□□□□□ -1.99
LMO3-235ENST00000616247 MT1FP04733 61 aa2.59□□□□□ -1.99
LMO3-235ENST00000616247 MT2AP02795 61 aa2.57□□□□□ -2
LMO3-235ENST00000616247 KRTAP10-7P60409 375 aaPredicted RBP2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms