RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 KRTAP4-5Q9BYR2 181 aa4.58□□□□□ -1.68
PDLIM5-222ENST00000615540 TPRXLQ17RH7 258 aa4.56□□□□□ -1.68
PDLIM5-222ENST00000615540 PLAC4Q8WY50 150 aa4.54□□□□□ -1.68
PDLIM5-222ENST00000615540 P0C880 135 aa4.53□□□□□ -1.68
PDLIM5-222ENST00000615540 C10orf95Q9H7T3 257 aa4.53□□□□□ -1.68
PDLIM5-222ENST00000615540 KRTAP3-1Q9BYR8 98 aa4.53□□□□□ -1.68
PDLIM5-222ENST00000615540 DMBT1Q9UGM3 2413 aaPredicted RBP4.51□□□□□ -1.69
PDLIM5-222ENST00000615540 LRP1BQ9NZR2 4599 aa4.5□□□□□ -1.69
PDLIM5-222ENST00000615540 H3BS24 57 aa4.49□□□□□ -1.69
PDLIM5-222ENST00000615540 FAT1Q14517 4588 aa4.49□□□□□ -1.69
PDLIM5-222ENST00000615540 LUZP6Q538Z0 58 aa4.48□□□□□ -1.69
PDLIM5-222ENST00000615540 PKD1P98161 4303 aa4.45□□□□□ -1.7
PDLIM5-222ENST00000615540 SACSQ9NZJ4 4579 aa4.45□□□□□ -1.7
PDLIM5-222ENST00000615540 LPAP08519 4548 aa4.44□□□□□ -1.7
PDLIM5-222ENST00000615540 KRTAP10-4P60372 401 aaPredicted RBP4.44□□□□□ -1.7
PDLIM5-222ENST00000615540 KRTAP12-2P59991 146 aa4.41□□□□□ -1.7
PDLIM5-222ENST00000615540 MT1HL1P0DM35 61 aa4.37□□□□□ -1.71
PDLIM5-222ENST00000615540 KRTAP13-4Q3LI77 160 aa4.35□□□□□ -1.71
PDLIM5-222ENST00000615540 DYNC1H1Q14204 4646 aaKnown RBP4.34□□□□□ -1.71
PDLIM5-222ENST00000615540 PKHD1L1Q86WI1 4243 aa4.33□□□□□ -1.72
PDLIM5-222ENST00000615540 LRP1Q07954 4544 aaKnown RBP4.32□□□□□ -1.72
PDLIM5-222ENST00000615540 TNP1P09430 55 aa4.32□□□□□ -1.72
PDLIM5-222ENST00000615540 KRTAP17-1Q9BYP8 105 aa4.31□□□□□ -1.72
PDLIM5-222ENST00000615540 NDUFAF8A1L188 74 aa4.31□□□□□ -1.72
PDLIM5-222ENST00000615540 KRTAP10-10P60014 251 aa4.31□□□□□ -1.72
PDLIM5-222ENST00000615540 FAT3Q8TDW7 4589 aa4.31□□□□□ -1.72
PDLIM5-222ENST00000615540 HSPG2P98160 4391 aa4.3□□□□□ -1.72
PDLIM5-222ENST00000615540 KRTAP10-6P60371 365 aaPredicted RBP4.29□□□□□ -1.72
PDLIM5-222ENST00000615540 APOBP04114 4563 aaKnown RBP4.28□□□□□ -1.72
PDLIM5-222ENST00000615540 KRTAP3-3Q9BYR6 98 aa4.27□□□□□ -1.73
PDLIM5-222ENST00000615540 KRTAP12-1P59990 96 aa4.27□□□□□ -1.73
PDLIM5-222ENST00000615540 MYCBP2O75592 4640 aa4.24□□□□□ -1.73
PDLIM5-222ENST00000615540 TNXBP22105 4242 aa4.21□□□□□ -1.74
PDLIM5-222ENST00000615540 KRTAP3-2Q9BYR7 98 aa4.2□□□□□ -1.74
PDLIM5-222ENST00000615540 KMT2CQ8NEZ4 4911 aaKnown RBP4.2□□□□□ -1.74
PDLIM5-222ENST00000615540 A0A0A0MQY5 61 aa4.18□□□□□ -1.74
PDLIM5-222ENST00000615540 PP632Q6XCG6 107 aa4.13□□□□□ -1.75
PDLIM5-222ENST00000615540 RYR1P21817 5038 aa4.1□□□□□ -1.75
PDLIM5-222ENST00000615540 LORP23490 312 aaPredicted RBP4.09□□□□□ -1.75
PDLIM5-222ENST00000615540 RYR3Q15413 4870 aa4.09□□□□□ -1.76
PDLIM5-222ENST00000615540 KRTAP4-1Q9BYQ7 146 aa4.05□□□□□ -1.76
PDLIM5-222ENST00000615540 RYR2Q92736 4967 aa4.05□□□□□ -1.76
PDLIM5-222ENST00000615540 PRO2289Q9P1D8 64 aa4□□□□□ -1.77
PDLIM5-222ENST00000615540 EPPK1P58107 5090 aaKnown RBP4□□□□□ -1.77
PDLIM5-222ENST00000615540 LRP2P98164 4655 aa3.94□□□□□ -1.78
PDLIM5-222ENST00000615540 KRTAP15-1Q3LI76 137 aa3.89□□□□□ -1.79
PDLIM5-222ENST00000615540 KIAA1109Q2LD37 5005 aa3.85□□□□□ -1.79
PDLIM5-222ENST00000615540 MT1HP80294 61 aa3.82□□□□□ -1.8
PDLIM5-222ENST00000615540 ABCA13Q86UQ4 5058 aa3.81□□□□□ -1.8
PDLIM5-222ENST00000615540 MUC2Q02817 5179 aa3.81□□□□□ -1.8
PDLIM5-222ENST00000615540 LCE3AQ5TA76 89 aa3.81□□□□□ -1.8
PDLIM5-222ENST00000615540 CRCT1Q9UGL9 99 aa3.81□□□□□ -1.8
PDLIM5-222ENST00000615540 KRTAP10-12P60413 245 aa3.79□□□□□ -1.8
PDLIM5-222ENST00000615540 MT2AP02795 61 aa3.7□□□□□ -1.82
PDLIM5-222ENST00000615540 MUC17Q685J3 4493 aa3.7□□□□□ -1.82
PDLIM5-222ENST00000615540 MT1FP04733 61 aa3.69□□□□□ -1.82
PDLIM5-222ENST00000615540 HERC2O95714 4834 aa3.68□□□□□ -1.82
PDLIM5-222ENST00000615540 KRTAP12-3P60328 96 aa3.66□□□□□ -1.82
PDLIM5-222ENST00000615540 HERC1Q15751 4861 aa3.63□□□□□ -1.83
PDLIM5-222ENST00000615540 SPRR2GQ9BYE4 73 aa3.62□□□□□ -1.83
PDLIM5-222ENST00000615540 BIRC6Q9NR09 4857 aa3.59□□□□□ -1.83
PDLIM5-222ENST00000615540 KRTAP23-1A1A580 65 aa3.57□□□□□ -1.84
PDLIM5-222ENST00000615540 UBR4Q5T4S7 5183 aa3.55□□□□□ -1.84
PDLIM5-222ENST00000615540 PCLOQ9Y6V0 5065 aa3.53□□□□□ -1.84
PDLIM5-222ENST00000615540 LCE2CQ5TA81 110 aa3.51□□□□□ -1.85
PDLIM5-222ENST00000615540 FAT4Q6V0I7 4981 aa3.51□□□□□ -1.85
PDLIM5-222ENST00000615540 KRTAP19-1Q8IUB9 90 aa3.5□□□□□ -1.85
PDLIM5-222ENST00000615540 KRTAP10-7P60409 375 aaPredicted RBP3.48□□□□□ -1.85
PDLIM5-222ENST00000615540 FLGP20930 4061 aaPredicted RBP3.47□□□□□ -1.85
PDLIM5-222ENST00000615540 KRTAP19-5Q3LI72 72 aa3.47□□□□□ -1.85
PDLIM5-222ENST00000615540 FSIP2Q5CZC0 6907 aa3.47□□□□□ -1.85
PDLIM5-222ENST00000615540 KRTAP8-1Q8IUC2 63 aa3.46□□□□□ -1.86
PDLIM5-222ENST00000615540 KRTAP19-2Q3LHN2 52 aa3.45□□□□□ -1.86
PDLIM5-222ENST00000615540 KRTAP9-8Q9BYQ0 159 aa3.45□□□□□ -1.86
PDLIM5-222ENST00000615540 MT1XP80297 61 aa3.41□□□□□ -1.86
PDLIM5-222ENST00000615540 KRTAP10-5P60370 271 aa3.4□□□□□ -1.86
PDLIM5-222ENST00000615540 MT1BP07438 61 aa3.39□□□□□ -1.87
PDLIM5-222ENST00000615540 KRTAP4-8A0A0G2JLE6 195 aa3.39□□□□□ -1.87
PDLIM5-222ENST00000615540 KRTAP4-8Q9BYQ9 185 aa3.39□□□□□ -1.87
PDLIM5-222ENST00000615540 RNF213Q63HN8 5207 aa3.39□□□□□ -1.87
PDLIM5-222ENST00000615540 KRTAP19-8Q3LI54 63 aa3.38□□□□□ -1.87
PDLIM5-222ENST00000615540 INE1O15225 51 aa3.34□□□□□ -1.87
PDLIM5-222ENST00000615540 KRTAP9-3Q9BYQ3 159 aa3.34□□□□□ -1.87
PDLIM5-222ENST00000615540 LCE3CQ5T5A8 94 aa3.32□□□□□ -1.88
PDLIM5-222ENST00000615540 HMCN2Q8NDA2 5059 aa3.32□□□□□ -1.88
PDLIM5-222ENST00000615540 KMT2DO14686 5537 aa3.31□□□□□ -1.88
PDLIM5-222ENST00000615540 KRTAP4-7Q9BYR0 210 aa3.27□□□□□ -1.89
PDLIM5-222ENST00000615540 SPRR2FQ96RM1 72 aa3.27□□□□□ -1.89
PDLIM5-222ENST00000615540 LCE2BO14633 110 aa3.24□□□□□ -1.89
PDLIM5-222ENST00000615540 USH2AO75445 5202 aa3.16□□□□□ -1.9
PDLIM5-222ENST00000615540 SYNE2Q8WXH0 6885 aaKnown RBP3.14□□□□□ -1.91
PDLIM5-222ENST00000615540 MT1GP13640 62 aa3.14□□□□□ -1.91
PDLIM5-222ENST00000615540 KRTAP4-3Q9BYR4 195 aa3.12□□□□□ -1.91
PDLIM5-222ENST00000615540 LOC100996750A0A140TA64 210 aa3.12□□□□□ -1.91
PDLIM5-222ENST00000615540 SPRR5A0A1B0GTR4 108 aa3.11□□□□□ -1.91
PDLIM5-222ENST00000615540 SPRR2EP22531 72 aa3.07□□□□□ -1.92
PDLIM5-222ENST00000615540 SPRR2BP35325 72 aa3.07□□□□□ -1.92
PDLIM5-222ENST00000615540 SPRR2AP35326 72 aa3.07□□□□□ -1.92
PDLIM5-222ENST00000615540 LCE3BQ5TA77 95 aa3.04□□□□□ -1.92
PDLIM5-222ENST00000615540 LCE2AQ5TA79 106 aaPredicted RBP3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms