RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 RPL37P61927 97 aaKnown RBP5.52□□□□□ -1.53
VPS39-214ENST00000614932 DYNC1H1Q14204 4646 aaKnown RBP5.52□□□□□ -1.53
VPS39-214ENST00000614932 KRTAP21-3Q3LHN1 58 aa5.51□□□□□ -1.53
VPS39-214ENST00000614932 RYR2Q92736 4967 aa5.44□□□□□ -1.54
VPS39-214ENST00000614932 APOBP04114 4563 aaKnown RBP5.42□□□□□ -1.54
VPS39-214ENST00000614932 A0A1B0GVY2 172 aa5.4□□□□□ -1.55
VPS39-214ENST00000614932 C9orf92A6NGG3 77 aa5.38□□□□□ -1.55
VPS39-214ENST00000614932 A0A0D9SG42 100 aa5.37□□□□□ -1.55
VPS39-214ENST00000614932 KRTAP3-1Q9BYR8 98 aa5.37□□□□□ -1.55
VPS39-214ENST00000614932 RYR3Q15413 4870 aa5.35□□□□□ -1.55
VPS39-214ENST00000614932 LRP1Q07954 4544 aaKnown RBP5.35□□□□□ -1.55
VPS39-214ENST00000614932 KRTAP10-4P60372 401 aaPredicted RBP5.33□□□□□ -1.56
VPS39-214ENST00000614932 KRTAP13-4Q3LI77 160 aa5.33□□□□□ -1.56
VPS39-214ENST00000614932 S4R3F8 94 aa5.3□□□□□ -1.56
VPS39-214ENST00000614932 PKHD1L1Q86WI1 4243 aa5.29□□□□□ -1.56
VPS39-214ENST00000614932 XP32Q5T750 250 aa5.28□□□□□ -1.56
VPS39-214ENST00000614932 KRTAP10-6P60371 365 aaPredicted RBP5.28□□□□□ -1.56
VPS39-214ENST00000614932 DMBT1Q9UGM3 2413 aaPredicted RBP5.27□□□□□ -1.57
VPS39-214ENST00000614932 KRTAP3-2Q9BYR7 98 aa5.26□□□□□ -1.57
VPS39-214ENST00000614932 LCE2DQ5TA82 110 aaPredicted RBP5.25□□□□□ -1.57
VPS39-214ENST00000614932 KRTAP3-3Q9BYR6 98 aa5.25□□□□□ -1.57
VPS39-214ENST00000614932 HSPG2P98160 4391 aa5.25□□□□□ -1.57
VPS39-214ENST00000614932 PLAC4Q8WY50 150 aa5.24□□□□□ -1.57
VPS39-214ENST00000614932 KRTAP17-1Q9BYP8 105 aa5.24□□□□□ -1.57
VPS39-214ENST00000614932 KIAA1109Q2LD37 5005 aa5.23□□□□□ -1.57
VPS39-214ENST00000614932 Q5VSD8 79 aa5.23□□□□□ -1.57
VPS39-214ENST00000614932 MYCBP2O75592 4640 aa5.23□□□□□ -1.57
VPS39-214ENST00000614932 KRTAP12-2P59991 146 aa5.22□□□□□ -1.57
VPS39-214ENST00000614932 CAMK2N1Q7Z7J9 78 aa5.19□□□□□ -1.58
VPS39-214ENST00000614932 RPS29P62273 56 aaKnown RBP5.18□□□□□ -1.58
VPS39-214ENST00000614932 EPPK1P58107 5090 aaKnown RBP5.18□□□□□ -1.58
VPS39-214ENST00000614932 TNXBP22105 4242 aa5.18□□□□□ -1.58
VPS39-214ENST00000614932 RYR1P21817 5038 aa5.17□□□□□ -1.58
VPS39-214ENST00000614932 FAT3Q8TDW7 4589 aa5.16□□□□□ -1.58
VPS39-214ENST00000614932 KRTAP12-1P59990 96 aa5.14□□□□□ -1.59
VPS39-214ENST00000614932 KRTAP10-8P60410 259 aa5.1□□□□□ -1.59
VPS39-214ENST00000614932 LPAP08519 4548 aa5.06□□□□□ -1.6
VPS39-214ENST00000614932 KRTAP4-5Q9BYR2 181 aa5.03□□□□□ -1.6
VPS39-214ENST00000614932 ABCA13Q86UQ4 5058 aa5.03□□□□□ -1.6
VPS39-214ENST00000614932 MT1HL1P0DM35 61 aa5.02□□□□□ -1.61
VPS39-214ENST00000614932 PRO2289Q9P1D8 64 aa5□□□□□ -1.61
VPS39-214ENST00000614932 LRP2P98164 4655 aa5□□□□□ -1.61
VPS39-214ENST00000614932 M0QZ58 72 aa4.92□□□□□ -1.62
VPS39-214ENST00000614932 PP632Q6XCG6 107 aa4.85□□□□□ -1.63
VPS39-214ENST00000614932 HERC2O95714 4834 aa4.84□□□□□ -1.63
VPS39-214ENST00000614932 KRTAP23-1A1A580 65 aa4.82□□□□□ -1.64
VPS39-214ENST00000614932 R4GN34 69 aa4.79□□□□□ -1.64
VPS39-214ENST00000614932 MUC2Q02817 5179 aa4.78□□□□□ -1.64
VPS39-214ENST00000614932 INE1O15225 51 aa4.77□□□□□ -1.65
VPS39-214ENST00000614932 SPRR5A0A1B0GTR4 108 aa4.76□□□□□ -1.65
VPS39-214ENST00000614932 KRTAP4-1Q9BYQ7 146 aa4.71□□□□□ -1.66
VPS39-214ENST00000614932 HERC1Q15751 4861 aa4.7□□□□□ -1.66
VPS39-214ENST00000614932 BIRC6Q9NR09 4857 aa4.68□□□□□ -1.66
VPS39-214ENST00000614932 PCLOQ9Y6V0 5065 aa4.67□□□□□ -1.66
VPS39-214ENST00000614932 MUC17Q685J3 4493 aa4.67□□□□□ -1.66
VPS39-214ENST00000614932 LCE2BO14633 110 aa4.66□□□□□ -1.66
VPS39-214ENST00000614932 LCE2CQ5TA81 110 aa4.62□□□□□ -1.67
VPS39-214ENST00000614932 LORP23490 312 aaPredicted RBP4.55□□□□□ -1.68
VPS39-214ENST00000614932 FAT4Q6V0I7 4981 aa4.54□□□□□ -1.68
VPS39-214ENST00000614932 LCE2AQ5TA79 106 aaPredicted RBP4.53□□□□□ -1.68
VPS39-214ENST00000614932 HMCN2Q8NDA2 5059 aa4.51□□□□□ -1.69
VPS39-214ENST00000614932 RNF213Q63HN8 5207 aa4.51□□□□□ -1.69
VPS39-214ENST00000614932 KRTAP19-2Q3LHN2 52 aa4.49□□□□□ -1.69
VPS39-214ENST00000614932 UBR4Q5T4S7 5183 aa4.46□□□□□ -1.7
VPS39-214ENST00000614932 TNP1P09430 55 aa4.42□□□□□ -1.7
VPS39-214ENST00000614932 FLGP20930 4061 aaPredicted RBP4.39□□□□□ -1.71
VPS39-214ENST00000614932 M0R2T5 61 aa4.33□□□□□ -1.72
VPS39-214ENST00000614932 MT1HP80294 61 aa4.22□□□□□ -1.73
VPS39-214ENST00000614932 KRTAP10-10P60014 251 aa4.17□□□□□ -1.74
VPS39-214ENST00000614932 MT1FP04733 61 aa4.14□□□□□ -1.75
VPS39-214ENST00000614932 KRTAP19-1Q8IUB9 90 aa4.13□□□□□ -1.75
VPS39-214ENST00000614932 MT2AP02795 61 aa4.12□□□□□ -1.75
VPS39-214ENST00000614932 KRTAP9-8Q9BYQ0 159 aa4.09□□□□□ -1.75
VPS39-214ENST00000614932 LCE3AQ5TA76 89 aa4.09□□□□□ -1.75
VPS39-214ENST00000614932 SPRR2GQ9BYE4 73 aa4.08□□□□□ -1.76
VPS39-214ENST00000614932 USH2AO75445 5202 aa4□□□□□ -1.77
VPS39-214ENST00000614932 KRTAP8-1Q8IUC2 63 aa3.99□□□□□ -1.77
VPS39-214ENST00000614932 KRTAP10-12P60413 245 aa3.97□□□□□ -1.77
VPS39-214ENST00000614932 MT1BP07438 61 aa3.94□□□□□ -1.78
VPS39-214ENST00000614932 KRTAP9-3Q9BYQ3 159 aa3.91□□□□□ -1.78
VPS39-214ENST00000614932 KRTAP19-8Q3LI54 63 aa3.89□□□□□ -1.79
VPS39-214ENST00000614932 KRTAP10-5P60370 271 aa3.88□□□□□ -1.79
VPS39-214ENST00000614932 MT1XP80297 61 aa3.88□□□□□ -1.79
VPS39-214ENST00000614932 KRTAP12-3P60328 96 aa3.86□□□□□ -1.79
VPS39-214ENST00000614932 KMT2DO14686 5537 aa3.85□□□□□ -1.79
VPS39-214ENST00000614932 KRTAP10-7P60409 375 aaPredicted RBP3.82□□□□□ -1.8
VPS39-214ENST00000614932 FSIP2Q5CZC0 6907 aa3.79□□□□□ -1.8
VPS39-214ENST00000614932 KRTAP2-3P0C7H8 128 aa3.73□□□□□ -1.81
VPS39-214ENST00000614932 KRTAP2-4Q9BYR9 128 aa3.73□□□□□ -1.81
VPS39-214ENST00000614932 KRTAP2-1Q9BYU5 128 aa3.73□□□□□ -1.81
VPS39-214ENST00000614932 LCE3CQ5T5A8 94 aa3.68□□□□□ -1.82
VPS39-214ENST00000614932 KRTAP4-8A0A0G2JLE6 195 aa3.68□□□□□ -1.82
VPS39-214ENST00000614932 KRTAP4-8Q9BYQ9 185 aa3.68□□□□□ -1.82
VPS39-214ENST00000614932 KRTAP19-5Q3LI72 72 aa3.62□□□□□ -1.83
VPS39-214ENST00000614932 SSPOA2VEC9 5147 aa3.62□□□□□ -1.83
VPS39-214ENST00000614932 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
VPS39-214ENST00000614932 KRTAP4-7Q9BYR0 210 aa3.48□□□□□ -1.85
VPS39-214ENST00000614932 KRTAP12-4P60329 112 aa3.45□□□□□ -1.86
VPS39-214ENST00000614932 KRTAP19-7Q3SYF9 63 aa3.45□□□□□ -1.86
VPS39-214ENST00000614932 FCGBPQ9Y6R7 5405 aaPredicted RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms