RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 TYMSOSQ8TAI1 123 aa12.12□□□□□ -0.47
POLR2J3-220ENST00000613744 H0YAA0 97 aa12.07□□□□□ -0.48
POLR2J3-220ENST00000613744 SPINK1P00995 79 aa12.06□□□□□ -0.48
POLR2J3-220ENST00000613744 LINC00304Q8N9R0 145 aa12.05□□□□□ -0.48
POLR2J3-220ENST00000613744 TNXBP22105 4242 aa12.05□□□□□ -0.48
POLR2J3-220ENST00000613744 MT1HL1P0DM35 61 aa12.04□□□□□ -0.48
POLR2J3-220ENST00000613744 KRTAP10-8P60410 259 aa12.04□□□□□ -0.48
POLR2J3-220ENST00000613744 ROMO1P60602 79 aa12.03□□□□□ -0.48
POLR2J3-220ENST00000613744 J3QL48 77 aa11.98□□□□□ -0.49
POLR2J3-220ENST00000613744 A0A1B0GU33 70 aa11.97□□□□□ -0.49
POLR2J3-220ENST00000613744 H1FX-AS1Q4G0G2 97 aa11.93□□□□□ -0.5
POLR2J3-220ENST00000613744 DMBT1Q9UGM3 2413 aaPredicted RBP11.91□□□□□ -0.5
POLR2J3-220ENST00000613744 K7ERS5 55 aa11.86□□□□□ -0.51
POLR2J3-220ENST00000613744 RPS29P62273 56 aaKnown RBP11.76□□□□□ -0.53
POLR2J3-220ENST00000613744 HERC1Q15751 4861 aa11.75□□□□□ -0.53
POLR2J3-220ENST00000613744 KRTAP3-1Q9BYR8 98 aa11.68□□□□□ -0.54
POLR2J3-220ENST00000613744 C20orf166-AS1Q96NR2 134 aa11.64□□□□□ -0.55
POLR2J3-220ENST00000613744 P0C880 135 aa11.61□□□□□ -0.55
POLR2J3-220ENST00000613744 COX6B2Q6YFQ2 88 aa11.61□□□□□ -0.55
POLR2J3-220ENST00000613744 CRIPTQ9P021 101 aa11.5□□□□□ -0.57
POLR2J3-220ENST00000613744 RPL37P61927 97 aaKnown RBP11.49□□□□□ -0.57
POLR2J3-220ENST00000613744 C9orf92A6NGG3 77 aa11.45□□□□□ -0.58
POLR2J3-220ENST00000613744 LPAP08519 4548 aa11.45□□□□□ -0.58
POLR2J3-220ENST00000613744 HMCN2Q8NDA2 5059 aa11.43□□□□□ -0.58
POLR2J3-220ENST00000613744 SPINT4Q6UDR6 99 aa11.37□□□□□ -0.59
POLR2J3-220ENST00000613744 TPRXLQ17RH7 258 aa11.34□□□□□ -0.59
POLR2J3-220ENST00000613744 LRP2P98164 4655 aa11.31□□□□□ -0.6
POLR2J3-220ENST00000613744 KRTAP10-6P60371 365 aaPredicted RBP11.31□□□□□ -0.6
POLR2J3-220ENST00000613744 KRTAP15-1Q3LI76 137 aa11.24□□□□□ -0.61
POLR2J3-220ENST00000613744 KRTAP13-4Q3LI77 160 aa11.21□□□□□ -0.62
POLR2J3-220ENST00000613744 XP32Q5T750 250 aa11.2□□□□□ -0.62
POLR2J3-220ENST00000613744 KRTAP3-2Q9BYR7 98 aa11.17□□□□□ -0.62
POLR2J3-220ENST00000613744 KRTAP3-3Q9BYR6 98 aa11.16□□□□□ -0.62
POLR2J3-220ENST00000613744 A0A0D9SG42 100 aa11.13□□□□□ -0.63
POLR2J3-220ENST00000613744 NDUFAF8A1L188 74 aa11.09□□□□□ -0.63
POLR2J3-220ENST00000613744 C10orf95Q9H7T3 257 aa11.07□□□□□ -0.64
POLR2J3-220ENST00000613744 S4R3F8 94 aa11.07□□□□□ -0.64
POLR2J3-220ENST00000613744 UBR4Q5T4S7 5183 aa11.06□□□□□ -0.64
POLR2J3-220ENST00000613744 KRTAP12-2P59991 146 aa10.93□□□□□ -0.66
POLR2J3-220ENST00000613744 SEC61BP60468 96 aaKnown RBP10.93□□□□□ -0.66
POLR2J3-220ENST00000613744 MUC2Q02817 5179 aa10.89□□□□□ -0.67
POLR2J3-220ENST00000613744 RNF213Q63HN8 5207 aa10.88□□□□□ -0.67
POLR2J3-220ENST00000613744 MUC17Q685J3 4493 aa10.88□□□□□ -0.67
POLR2J3-220ENST00000613744 KRTAP12-1P59990 96 aa10.88□□□□□ -0.67
POLR2J3-220ENST00000613744 KRTAP4-1Q9BYQ7 146 aa10.83□□□□□ -0.68
POLR2J3-220ENST00000613744 M0QZ58 72 aa10.77□□□□□ -0.69
POLR2J3-220ENST00000613744 KRTAP19-2Q3LHN2 52 aa10.43□□□□□ -0.74
POLR2J3-220ENST00000613744 PLAC4Q8WY50 150 aa10.43□□□□□ -0.74
POLR2J3-220ENST00000613744 FAT4Q6V0I7 4981 aa10.42□□□□□ -0.74
POLR2J3-220ENST00000613744 A0A0A0MQY5 61 aa10.38□□□□□ -0.75
POLR2J3-220ENST00000613744 LCE2CQ5TA81 110 aa10.35□□□□□ -0.75
POLR2J3-220ENST00000613744 LUZP6Q538Z0 58 aa10.33□□□□□ -0.76
POLR2J3-220ENST00000613744 R4GN34 69 aa10.22□□□□□ -0.77
POLR2J3-220ENST00000613744 PP632Q6XCG6 107 aa10.21□□□□□ -0.77
POLR2J3-220ENST00000613744 MT1HP80294 61 aa10.19□□□□□ -0.78
POLR2J3-220ENST00000613744 FLGP20930 4061 aaPredicted RBP10.19□□□□□ -0.78
POLR2J3-220ENST00000613744 M0R2T5 61 aa10.1□□□□□ -0.79
POLR2J3-220ENST00000613744 LCE2AQ5TA79 106 aaPredicted RBP10.1□□□□□ -0.79
POLR2J3-220ENST00000613744 LORP23490 312 aaPredicted RBP9.84□□□□□ -0.83
POLR2J3-220ENST00000613744 KRTAP23-1A1A580 65 aa9.79□□□□□ -0.84
POLR2J3-220ENST00000613744 CAMK2N1Q7Z7J9 78 aa9.78□□□□□ -0.84
POLR2J3-220ENST00000613744 KRTAP9-8Q9BYQ0 159 aa9.73□□□□□ -0.85
POLR2J3-220ENST00000613744 SPRR5A0A1B0GTR4 108 aa9.73□□□□□ -0.85
POLR2J3-220ENST00000613744 MT2AP02795 61 aa9.67□□□□□ -0.86
POLR2J3-220ENST00000613744 MT1FP04733 61 aa9.62□□□□□ -0.87
POLR2J3-220ENST00000613744 KRTAP10-10P60014 251 aa9.6□□□□□ -0.87
POLR2J3-220ENST00000613744 TNP1P09430 55 aa9.58□□□□□ -0.88
POLR2J3-220ENST00000613744 KRTAP9-3Q9BYQ3 159 aa9.39□□□□□ -0.91
POLR2J3-220ENST00000613744 LCE2DQ5TA82 110 aaPredicted RBP9.29□□□□□ -0.92
POLR2J3-220ENST00000613744 PRO2289Q9P1D8 64 aa9.29□□□□□ -0.92
POLR2J3-220ENST00000613744 KRTAP9-2Q9BYQ4 174 aa9.28□□□□□ -0.92
POLR2J3-220ENST00000613744 LCE2BO14633 110 aa9.25□□□□□ -0.93
POLR2J3-220ENST00000613744 KRTAP19-1Q8IUB9 90 aa9.25□□□□□ -0.93
POLR2J3-220ENST00000613744 FSIP2Q5CZC0 6907 aa9.22□□□□□ -0.93
POLR2J3-220ENST00000613744 SPRR2GQ9BYE4 73 aa9.19□□□□□ -0.94
POLR2J3-220ENST00000613744 INE1O15225 51 aa9.16□□□□□ -0.94
POLR2J3-220ENST00000613744 USH2AO75445 5202 aa9.15□□□□□ -0.95
POLR2J3-220ENST00000613744 KRTAP19-8Q3LI54 63 aa9□□□□□ -0.97
POLR2J3-220ENST00000613744 MT1BP07438 61 aa8.98□□□□□ -0.97
POLR2J3-220ENST00000613744 SSPOA2VEC9 5147 aa8.94□□□□□ -0.98
POLR2J3-220ENST00000613744 LCE3AQ5TA76 89 aa8.88□□□□□ -0.99
POLR2J3-220ENST00000613744 CRCT1Q9UGL9 99 aa8.86□□□□□ -0.99
POLR2J3-220ENST00000613744 KRTAP8-1Q8IUC2 63 aa8.8□□□□□ -1
POLR2J3-220ENST00000613744 KRTAP19-6Q3LI70 58 aa8.72□□□□□ -1.01
POLR2J3-220ENST00000613744 KRTAP9-6A0A140TA67 174 aa8.71□□□□□ -1.01
POLR2J3-220ENST00000613744 FCGBPQ9Y6R7 5405 aaPredicted RBP8.64□□□□□ -1.03
POLR2J3-220ENST00000613744 KRTAP10-5P60370 271 aa8.6□□□□□ -1.03
POLR2J3-220ENST00000613744 MT1XP80297 61 aa8.59□□□□□ -1.03
POLR2J3-220ENST00000613744 KRTAP12-3P60328 96 aa8.48□□□□□ -1.05
POLR2J3-220ENST00000613744 KRTAP10-12P60413 245 aa8.44□□□□□ -1.06
POLR2J3-220ENST00000613744 MACF1Q9UPN3 7388 aaKnown RBP8.3□□□□□ -1.08
POLR2J3-220ENST00000613744 KRTAP10-7P60409 375 aaPredicted RBP8.26□□□□□ -1.09
POLR2J3-220ENST00000613744 KMT2DO14686 5537 aa8.23□□□□□ -1.09
POLR2J3-220ENST00000613744 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.22□□□□□ -1.09
POLR2J3-220ENST00000613744 SYNE2Q8WXH0 6885 aaKnown RBP8.16□□□□□ -1.1
POLR2J3-220ENST00000613744 KRTAP4-8A0A0G2JLE6 195 aa8.1□□□□□ -1.11
POLR2J3-220ENST00000613744 KRTAP4-8Q9BYQ9 185 aa8.1□□□□□ -1.11
POLR2J3-220ENST00000613744 LCE3CQ5T5A8 94 aa8.04□□□□□ -1.12
POLR2J3-220ENST00000613744 KRTAP9-7A8MTY7 169 aa7.93□□□□□ -1.14
POLR2J3-220ENST00000613744 KRTAP19-5Q3LI72 72 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms