RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 PCP4P48539 62 aa6.38□□□□□ -1.39
UPF1-205ENST00000598209 KRTAP19-1Q8IUB9 90 aa6.37□□□□□ -1.39
UPF1-205ENST00000598209 MT-ATP8P03928 68 aa6.36□□□□□ -1.39
UPF1-205ENST00000598209 IMUPQ9GZP8 106 aa6.36□□□□□ -1.39
UPF1-205ENST00000598209 A8MUN3 132 aa6.35□□□□□ -1.39
UPF1-205ENST00000598209 H3BPC8 53 aa6.35□□□□□ -1.39
UPF1-205ENST00000598209 NDUFC1O43677 76 aa6.31□□□□□ -1.4
UPF1-205ENST00000598209 FCGBPQ9Y6R7 5405 aaPredicted RBP6.3□□□□□ -1.4
UPF1-205ENST00000598209 KRTAP19-6Q3LI70 58 aa6.29□□□□□ -1.4
UPF1-205ENST00000598209 SMIM20Q8N5G0 67 aa6.25□□□□□ -1.41
UPF1-205ENST00000598209 TRAV7A0A075B6U4 112 aa6.24□□□□□ -1.41
UPF1-205ENST00000598209 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.24□□□□□ -1.41
UPF1-205ENST00000598209 SPRR2GQ9BYE4 73 aa6.24□□□□□ -1.41
UPF1-205ENST00000598209 DMAC1Q96GE9 116 aa6.22□□□□□ -1.41
UPF1-205ENST00000598209 H0YAA0 97 aa6.21□□□□□ -1.42
UPF1-205ENST00000598209 CRIPTQ9P021 101 aa6.19□□□□□ -1.42
UPF1-205ENST00000598209 KRTAP19-8Q3LI54 63 aa6.18□□□□□ -1.42
UPF1-205ENST00000598209 Q5VV11 94 aa6.18□□□□□ -1.42
UPF1-205ENST00000598209 MT1BP07438 61 aa6.17□□□□□ -1.42
UPF1-205ENST00000598209 ADM2Q7Z4H4 148 aa6.16□□□□□ -1.42
UPF1-205ENST00000598209 ANAPC13Q9BS18 74 aa6.14□□□□□ -1.43
UPF1-205ENST00000598209 KRTAP9-7A8MTY7 169 aa6.12□□□□□ -1.43
UPF1-205ENST00000598209 SNURFQ9Y675 71 aa6.1□□□□□ -1.43
UPF1-205ENST00000598209 ACYP2P14621 99 aa6.09□□□□□ -1.43
UPF1-205ENST00000598209 SERP2Q8N6R1 65 aa6.07□□□□□ -1.44
UPF1-205ENST00000598209 A6NN06 94 aa6.05□□□□□ -1.44
UPF1-205ENST00000598209 C20orf197Q8N268 126 aa6.05□□□□□ -1.44
UPF1-205ENST00000598209 P0C880 135 aa6.04□□□□□ -1.44
UPF1-205ENST00000598209 MACF1Q9UPN3 7388 aaKnown RBP6.01□□□□□ -1.45
UPF1-205ENST00000598209 KRTAP10-5P60370 271 aa6□□□□□ -1.45
UPF1-205ENST00000598209 SPANXA2-OT1Q8N9U9 137 aa6□□□□□ -1.45
UPF1-205ENST00000598209 KRTAP3-2Q9BYR7 98 aa6□□□□□ -1.45
UPF1-205ENST00000598209 CHKB-CPT1BH3BT56 60 aa5.99□□□□□ -1.45
UPF1-205ENST00000598209 SPTSSBQ8NFR3 76 aa5.99□□□□□ -1.45
UPF1-205ENST00000598209 R4GN34 69 aa5.99□□□□□ -1.45
UPF1-205ENST00000598209 COX7CP15954 63 aa5.97□□□□□ -1.45
UPF1-205ENST00000598209 M0QZ58 72 aa5.95□□□□□ -1.46
UPF1-205ENST00000598209 SYNE2Q8WXH0 6885 aaKnown RBP5.9□□□□□ -1.46
UPF1-205ENST00000598209 PLAC4Q8WY50 150 aa5.89□□□□□ -1.47
UPF1-205ENST00000598209 KRTAP6-3Q3LI67 103 aa5.88□□□□□ -1.47
UPF1-205ENST00000598209 CCDC179H3BU77 68 aa5.87□□□□□ -1.47
UPF1-205ENST00000598209 TMEM258P61165 79 aa5.86□□□□□ -1.47
UPF1-205ENST00000598209 LINC01554Q52M75 96 aa5.86□□□□□ -1.47
UPF1-205ENST00000598209 COA5Q86WW8 74 aa5.83□□□□□ -1.48
UPF1-205ENST00000598209 PRO2289Q9P1D8 64 aa5.83□□□□□ -1.48
UPF1-205ENST00000598209 ATP5EP56381 51 aaPredicted RBP5.82□□□□□ -1.48
UPF1-205ENST00000598209 MT1XP80297 61 aa5.82□□□□□ -1.48
UPF1-205ENST00000598209 CYSTM1Q9H1C7 97 aa5.81□□□□□ -1.48
UPF1-205ENST00000598209 H7BZZ5 65 aa5.8□□□□□ -1.48
UPF1-205ENST00000598209 RPS28P62857 69 aaKnown RBP5.8□□□□□ -1.48
UPF1-205ENST00000598209 KRTAP13-4Q3LI77 160 aa5.69□□□□□ -1.5
UPF1-205ENST00000598209 SEC61GP60059 68 aa5.67□□□□□ -1.5
UPF1-205ENST00000598209 SERP1Q9Y6X1 66 aa5.67□□□□□ -1.5
UPF1-205ENST00000598209 KRTAP5-9P26371 169 aa5.66□□□□□ -1.5
UPF1-205ENST00000598209 KRTAP12-2P59991 146 aa5.65□□□□□ -1.5
UPF1-205ENST00000598209 KMT2DO14686 5537 aa5.64□□□□□ -1.51
UPF1-205ENST00000598209 MUC12Q9UKN1 5478 aa5.63□□□□□ -1.51
UPF1-205ENST00000598209 NEBP20929 6669 aa5.57□□□□□ -1.52
UPF1-205ENST00000598209 SMIM26A0A096LP01 95 aa5.56□□□□□ -1.52
UPF1-205ENST00000598209 A0A1B0GU33 70 aa5.56□□□□□ -1.52
UPF1-205ENST00000598209 KRTAP10-7P60409 375 aaPredicted RBP5.56□□□□□ -1.52
UPF1-205ENST00000598209 KRTAP8-1Q8IUC2 63 aa5.56□□□□□ -1.52
UPF1-205ENST00000598209 SPATA8Q6RVD6 105 aa5.55□□□□□ -1.52
UPF1-205ENST00000598209 A0A0D9SG42 100 aa5.54□□□□□ -1.52
UPF1-205ENST00000598209 SPRR2FQ96RM1 72 aa5.54□□□□□ -1.52
UPF1-205ENST00000598209 KRTAP4-8A0A0G2JLE6 195 aa5.53□□□□□ -1.52
UPF1-205ENST00000598209 A0A1B0GU69 56 aa5.53□□□□□ -1.52
UPF1-205ENST00000598209 CAMK2N1Q7Z7J9 78 aa5.53□□□□□ -1.52
UPF1-205ENST00000598209 KRTAP4-8Q9BYQ9 185 aa5.53□□□□□ -1.52
UPF1-205ENST00000598209 KRTAP10-12P60413 245 aa5.52□□□□□ -1.53
UPF1-205ENST00000598209 V9GYY9 64 aa5.5□□□□□ -1.53
UPF1-205ENST00000598209 MDN1Q9NU22 5596 aa5.49□□□□□ -1.53
UPF1-205ENST00000598209 SPINT4Q6UDR6 99 aa5.45□□□□□ -1.54
UPF1-205ENST00000598209 SPRR2EP22531 72 aa5.43□□□□□ -1.54
UPF1-205ENST00000598209 SPRR2BP35325 72 aa5.43□□□□□ -1.54
UPF1-205ENST00000598209 SPRR2AP35326 72 aa5.43□□□□□ -1.54
UPF1-205ENST00000598209 KRTAP12-1P59990 96 aa5.42□□□□□ -1.54
UPF1-205ENST00000598209 PRR15LQ9BU68 103 aa5.4□□□□□ -1.54
UPF1-205ENST00000598209 KRTAP20-1Q3LI63 56 aa5.39□□□□□ -1.55
UPF1-205ENST00000598209 Q1T7F1 81 aa5.38□□□□□ -1.55
UPF1-205ENST00000598209 LINC01558Q9Y6Z2 57 aa5.38□□□□□ -1.55
UPF1-205ENST00000598209 A8MU10 97 aa5.37□□□□□ -1.55
UPF1-205ENST00000598209 LCE1AQ5T7P2 110 aa5.37□□□□□ -1.55
UPF1-205ENST00000598209 SVIPQ8NHG7 77 aa5.37□□□□□ -1.55
UPF1-205ENST00000598209 KRTAP2-3P0C7H8 128 aa5.28□□□□□ -1.56
UPF1-205ENST00000598209 KRTAP2-4Q9BYR9 128 aa5.28□□□□□ -1.56
UPF1-205ENST00000598209 PRO0628Q9UI54 55 aa5.26□□□□□ -1.57
UPF1-205ENST00000598209 SPRR2DP22532 72 aa5.24□□□□□ -1.57
UPF1-205ENST00000598209 UQCR11O14957 56 aa5.22□□□□□ -1.57
UPF1-205ENST00000598209 KRTAP19-7Q3SYF9 63 aa5.2□□□□□ -1.58
UPF1-205ENST00000598209 C10orf95Q9H7T3 257 aa5.18□□□□□ -1.58
UPF1-205ENST00000598209 MT1EP04732 61 aa5.15□□□□□ -1.59
UPF1-205ENST00000598209 BRK1Q8WUW1 75 aa5.15□□□□□ -1.59
UPF1-205ENST00000598209 TNP1P09430 55 aa5.13□□□□□ -1.59
UPF1-205ENST00000598209 PSPHP1O15172 72 aa5.12□□□□□ -1.59
UPF1-205ENST00000598209 MIR22HGQ0VDD5 57 aa5.12□□□□□ -1.59
UPF1-205ENST00000598209 KRTAP2-2Q9BYT5 123 aa5.12□□□□□ -1.59
UPF1-205ENST00000598209 KRTAP2-1Q9BYU5 128 aa5.12□□□□□ -1.59
UPF1-205ENST00000598209 KRTAP19-5Q3LI72 72 aa5.11□□□□□ -1.59
UPF1-205ENST00000598209 LCE3BQ5TA77 95 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms