RNA–Protein interactions for RNA: ENST00000574911.5

NCBP3-204, Transcript of nuclear cap binding subunit 3, humanhuman

TSL 1 (best)

Gene NCBP3, Length 2,701 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3-204ENST00000574911 HSPG2P98160 4391 aa4.69□□□□□ -1.66
NCBP3-204ENST00000574911 FLG2Q5D862 2391 aaPredicted RBP4.68□□□□□ -1.66
NCBP3-204ENST00000574911 LRP1Q07954 4544 aaKnown RBP4.68□□□□□ -1.66
NCBP3-204ENST00000574911 A0A1B0GU33 70 aa4.67□□□□□ -1.66
NCBP3-204ENST00000574911 H1FX-AS1Q4G0G2 97 aa4.67□□□□□ -1.66
NCBP3-204ENST00000574911 Q5VSD8 79 aa4.66□□□□□ -1.66
NCBP3-204ENST00000574911 RPL37P61927 97 aaKnown RBP4.65□□□□□ -1.66
NCBP3-204ENST00000574911 XP32Q5T750 250 aa4.62□□□□□ -1.67
NCBP3-204ENST00000574911 RYR1P21817 5038 aa4.62□□□□□ -1.67
NCBP3-204ENST00000574911 KRTAP17-1Q9BYP8 105 aa4.6□□□□□ -1.67
NCBP3-204ENST00000574911 LINC01554Q52M75 96 aa4.59□□□□□ -1.67
NCBP3-204ENST00000574911 RYR3Q15413 4870 aa4.58□□□□□ -1.68
NCBP3-204ENST00000574911 CSAG1Q6PB30 78 aa4.57□□□□□ -1.68
NCBP3-204ENST00000574911 MT1HL1P0DM35 61 aa4.56□□□□□ -1.68
NCBP3-204ENST00000574911 KRTAP10-6P60371 365 aaPredicted RBP4.56□□□□□ -1.68
NCBP3-204ENST00000574911 S4R3F8 94 aa4.54□□□□□ -1.68
NCBP3-204ENST00000574911 MYCBP2O75592 4640 aa4.52□□□□□ -1.69
NCBP3-204ENST00000574911 LCE2BO14633 110 aa4.5□□□□□ -1.69
NCBP3-204ENST00000574911 K7ERS5 55 aa4.5□□□□□ -1.69
NCBP3-204ENST00000574911 KRTAP13-4Q3LI77 160 aa4.5□□□□□ -1.69
NCBP3-204ENST00000574911 KRTAP25-1Q3LHN0 102 aa4.47□□□□□ -1.69
NCBP3-204ENST00000574911 KIAA1109Q2LD37 5005 aa4.47□□□□□ -1.69
NCBP3-204ENST00000574911 TPRXLQ17RH7 258 aa4.45□□□□□ -1.7
NCBP3-204ENST00000574911 P0C880 135 aa4.45□□□□□ -1.7
NCBP3-204ENST00000574911 DMBT1Q9UGM3 2413 aaPredicted RBP4.45□□□□□ -1.7
NCBP3-204ENST00000574911 LPAP08519 4548 aa4.44□□□□□ -1.7
NCBP3-204ENST00000574911 A0A0D9SG42 100 aa4.42□□□□□ -1.7
NCBP3-204ENST00000574911 ROMO1P60602 79 aa4.42□□□□□ -1.7
NCBP3-204ENST00000574911 LOC100996750A0A140TA64 210 aa4.41□□□□□ -1.7
NCBP3-204ENST00000574911 KRTAP4-6Q9BYQ5 205 aa4.41□□□□□ -1.7
NCBP3-204ENST00000574911 LRP2P98164 4655 aa4.4□□□□□ -1.7
NCBP3-204ENST00000574911 EPPK1P58107 5090 aaKnown RBP4.4□□□□□ -1.71
NCBP3-204ENST00000574911 CRIPTQ9P021 101 aa4.37□□□□□ -1.71
NCBP3-204ENST00000574911 KRTAP12-2P59991 146 aa4.34□□□□□ -1.71
NCBP3-204ENST00000574911 KRTAP4-5Q9BYR2 181 aa4.34□□□□□ -1.71
NCBP3-204ENST00000574911 KRTAP12-1P59990 96 aa4.32□□□□□ -1.72
NCBP3-204ENST00000574911 ABCA13Q86UQ4 5058 aa4.32□□□□□ -1.72
NCBP3-204ENST00000574911 M0QZ58 72 aa4.32□□□□□ -1.72
NCBP3-204ENST00000574911 MUC17Q685J3 4493 aa4.3□□□□□ -1.72
NCBP3-204ENST00000574911 SPINT4Q6UDR6 99 aa4.28□□□□□ -1.72
NCBP3-204ENST00000574911 KRTAP23-1A1A580 65 aa4.26□□□□□ -1.73
NCBP3-204ENST00000574911 LUZP6Q538Z0 58 aa4.24□□□□□ -1.73
NCBP3-204ENST00000574911 KRTAP4-1Q9BYQ7 146 aa4.24□□□□□ -1.73
NCBP3-204ENST00000574911 C10orf95Q9H7T3 257 aa4.24□□□□□ -1.73
NCBP3-204ENST00000574911 LCE2AQ5TA79 106 aaPredicted RBP4.21□□□□□ -1.74
NCBP3-204ENST00000574911 KRTAP19-2Q3LHN2 52 aa4.19□□□□□ -1.74
NCBP3-204ENST00000574911 R4GN34 69 aa4.19□□□□□ -1.74
NCBP3-204ENST00000574911 LORP23490 312 aaPredicted RBP4.17□□□□□ -1.74
NCBP3-204ENST00000574911 CAMK2N1Q7Z7J9 78 aa4.16□□□□□ -1.74
NCBP3-204ENST00000574911 HERC2O95714 4834 aa4.15□□□□□ -1.74
NCBP3-204ENST00000574911 LCE2CQ5TA81 110 aa4.11□□□□□ -1.75
NCBP3-204ENST00000574911 BIRC6Q9NR09 4857 aa4.11□□□□□ -1.75
NCBP3-204ENST00000574911 KRTAP15-1Q3LI76 137 aa4.08□□□□□ -1.76
NCBP3-204ENST00000574911 FLGP20930 4061 aaPredicted RBP4.05□□□□□ -1.76
NCBP3-204ENST00000574911 HERC1Q15751 4861 aa4.02□□□□□ -1.77
NCBP3-204ENST00000574911 MUC2Q02817 5179 aa3.98□□□□□ -1.77
NCBP3-204ENST00000574911 HMCN2Q8NDA2 5059 aa3.96□□□□□ -1.78
NCBP3-204ENST00000574911 NDUFAF8A1L188 74 aa3.94□□□□□ -1.78
NCBP3-204ENST00000574911 KRTAP4-8Q9BYQ9 185 aa3.93□□□□□ -1.78
NCBP3-204ENST00000574911 PP632Q6XCG6 107 aa3.93□□□□□ -1.78
NCBP3-204ENST00000574911 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.91□□□□□ -1.78
NCBP3-204ENST00000574911 PCLOQ9Y6V0 5065 aa3.9□□□□□ -1.78
NCBP3-204ENST00000574911 PLAC4Q8WY50 150 aa3.9□□□□□ -1.79
NCBP3-204ENST00000574911 KRTAP9-2Q9BYQ4 174 aa3.89□□□□□ -1.79
NCBP3-204ENST00000574911 KRTAP9-6A0A140TA67 174 aa3.87□□□□□ -1.79
NCBP3-204ENST00000574911 SPRR2GQ9BYE4 73 aa3.85□□□□□ -1.79
NCBP3-204ENST00000574911 TNP1P09430 55 aa3.84□□□□□ -1.79
NCBP3-204ENST00000574911 KRTAP19-1Q8IUB9 90 aa3.83□□□□□ -1.8
NCBP3-204ENST00000574911 MT1HP80294 61 aa3.81□□□□□ -1.8
NCBP3-204ENST00000574911 FAT4Q6V0I7 4981 aa3.79□□□□□ -1.8
NCBP3-204ENST00000574911 M0R2T5 61 aa3.78□□□□□ -1.8
NCBP3-204ENST00000574911 RNF213Q63HN8 5207 aa3.77□□□□□ -1.81
NCBP3-204ENST00000574911 MT2AP02795 61 aa3.75□□□□□ -1.81
NCBP3-204ENST00000574911 MT1FP04733 61 aa3.75□□□□□ -1.81
NCBP3-204ENST00000574911 KRTAP9-8Q9BYQ0 159 aa3.73□□□□□ -1.81
NCBP3-204ENST00000574911 KRTAP10-10P60014 251 aa3.72□□□□□ -1.81
NCBP3-204ENST00000574911 LCE3BQ5TA77 95 aa3.72□□□□□ -1.81
NCBP3-204ENST00000574911 UBR4Q5T4S7 5183 aa3.7□□□□□ -1.82
NCBP3-204ENST00000574911 KRTAP19-8Q3LI54 63 aa3.69□□□□□ -1.82
NCBP3-204ENST00000574911 KRTAP9-9Q9BYP9 154 aa3.69□□□□□ -1.82
NCBP3-204ENST00000574911 KRTAP9-4Q9BYQ2 154 aa3.69□□□□□ -1.82
NCBP3-204ENST00000574911 KRTAP4-8A0A0G2JLE6 195 aa3.67□□□□□ -1.82
NCBP3-204ENST00000574911 SPRR5A0A1B0GTR4 108 aa3.67□□□□□ -1.82
NCBP3-204ENST00000574911 KRTAP4-12Q9BQ66 201 aa3.65□□□□□ -1.82
NCBP3-204ENST00000574911 LCE3AQ5TA76 89 aa3.65□□□□□ -1.83
NCBP3-204ENST00000574911 PRO2289Q9P1D8 64 aa3.64□□□□□ -1.83
NCBP3-204ENST00000574911 MT1BP07438 61 aa3.63□□□□□ -1.83
NCBP3-204ENST00000574911 KRTAP10-5P60370 271 aa3.61□□□□□ -1.83
NCBP3-204ENST00000574911 MT1XP80297 61 aa3.6□□□□□ -1.83
NCBP3-204ENST00000574911 KRTAP9-3Q9BYQ3 159 aa3.58□□□□□ -1.84
NCBP3-204ENST00000574911 KRTAP8-1Q8IUC2 63 aa3.57□□□□□ -1.84
NCBP3-204ENST00000574911 KRTAP4-7Q9BYR0 210 aa3.55□□□□□ -1.84
NCBP3-204ENST00000574911 KRTAP10-12P60413 245 aa3.5□□□□□ -1.85
NCBP3-204ENST00000574911 KRTAP10-7P60409 375 aaPredicted RBP3.49□□□□□ -1.85
NCBP3-204ENST00000574911 KRTAP12-3P60328 96 aa3.47□□□□□ -1.85
NCBP3-204ENST00000574911 LCE1DQ5T752 114 aa3.47□□□□□ -1.85
NCBP3-204ENST00000574911 KRTAP4-2Q9BYR5 136 aa3.43□□□□□ -1.86
NCBP3-204ENST00000574911 KRTAP4-9Q9BYQ8 210 aa3.41□□□□□ -1.86
NCBP3-204ENST00000574911 INE1O15225 51 aa3.37□□□□□ -1.87
NCBP3-204ENST00000574911 KRTAP19-5Q3LI72 72 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 222.4 ms