RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 KRTAP10-6P60371 365 aaPredicted RBP7.52□□□□□ -1.21
SMG6-215ENST00000574501 RYR2Q92736 4967 aa7.48□□□□□ -1.21
SMG6-215ENST00000574501 NDUFAF8A1L188 74 aa7.48□□□□□ -1.21
SMG6-215ENST00000574501 SMR3BP02814 79 aaPredicted RBP7.45□□□□□ -1.22
SMG6-215ENST00000574501 KRTAP3-3Q9BYR6 98 aa7.44□□□□□ -1.22
SMG6-215ENST00000574501 RYR3Q15413 4870 aa7.43□□□□□ -1.22
SMG6-215ENST00000574501 PKHD1L1Q86WI1 4243 aa7.43□□□□□ -1.22
SMG6-215ENST00000574501 KRTAP3-2Q9BYR7 98 aa7.42□□□□□ -1.22
SMG6-215ENST00000574501 KRTAP15-1Q3LI76 137 aa7.42□□□□□ -1.22
SMG6-215ENST00000574501 FAT1Q14517 4588 aa7.42□□□□□ -1.22
SMG6-215ENST00000574501 DYNC1H1Q14204 4646 aaKnown RBP7.36□□□□□ -1.23
SMG6-215ENST00000574501 S4R3F8 94 aa7.36□□□□□ -1.23
SMG6-215ENST00000574501 APOBP04114 4563 aaKnown RBP7.35□□□□□ -1.23
SMG6-215ENST00000574501 KRTAP12-2P59991 146 aa7.35□□□□□ -1.23
SMG6-215ENST00000574501 HSPG2P98160 4391 aa7.31□□□□□ -1.24
SMG6-215ENST00000574501 A0A1B0GVY2 172 aa7.3□□□□□ -1.24
SMG6-215ENST00000574501 KRTAP10-8P60410 259 aa7.28□□□□□ -1.24
SMG6-215ENST00000574501 FAT3Q8TDW7 4589 aa7.24□□□□□ -1.25
SMG6-215ENST00000574501 KRTAP12-1P59990 96 aa7.22□□□□□ -1.25
SMG6-215ENST00000574501 LRP1Q07954 4544 aaKnown RBP7.21□□□□□ -1.26
SMG6-215ENST00000574501 MYCBP2O75592 4640 aa7.2□□□□□ -1.26
SMG6-215ENST00000574501 KRTAP10-4P60372 401 aaPredicted RBP7.2□□□□□ -1.26
SMG6-215ENST00000574501 EPPK1P58107 5090 aaKnown RBP7.19□□□□□ -1.26
SMG6-215ENST00000574501 XP32Q5T750 250 aa7.16□□□□□ -1.26
SMG6-215ENST00000574501 TNXBP22105 4242 aa7.11□□□□□ -1.27
SMG6-215ENST00000574501 KIAA1109Q2LD37 5005 aa7.08□□□□□ -1.28
SMG6-215ENST00000574501 LPAP08519 4548 aa7.08□□□□□ -1.28
SMG6-215ENST00000574501 RYR1P21817 5038 aa7□□□□□ -1.29
SMG6-215ENST00000574501 M0QZ58 72 aa6.99□□□□□ -1.29
SMG6-215ENST00000574501 KRTAP17-1Q9BYP8 105 aa6.95□□□□□ -1.3
SMG6-215ENST00000574501 Q5VSD8 79 aa6.95□□□□□ -1.3
SMG6-215ENST00000574501 PLAC4Q8WY50 150 aa6.91□□□□□ -1.3
SMG6-215ENST00000574501 A0A0A0MQY5 61 aa6.91□□□□□ -1.3
SMG6-215ENST00000574501 BIRC6Q9NR09 4857 aa6.91□□□□□ -1.3
SMG6-215ENST00000574501 LRP2P98164 4655 aa6.87□□□□□ -1.31
SMG6-215ENST00000574501 LUZP6Q538Z0 58 aa6.84□□□□□ -1.32
SMG6-215ENST00000574501 KRTAP4-5Q9BYR2 181 aa6.84□□□□□ -1.32
SMG6-215ENST00000574501 R4GN34 69 aa6.82□□□□□ -1.32
SMG6-215ENST00000574501 HERC2O95714 4834 aa6.77□□□□□ -1.32
SMG6-215ENST00000574501 ABCA13Q86UQ4 5058 aa6.76□□□□□ -1.33
SMG6-215ENST00000574501 LORP23490 312 aaPredicted RBP6.73□□□□□ -1.33
SMG6-215ENST00000574501 PCLOQ9Y6V0 5065 aa6.69□□□□□ -1.34
SMG6-215ENST00000574501 MT1HL1P0DM35 61 aa6.63□□□□□ -1.35
SMG6-215ENST00000574501 J3QL48 77 aa6.58□□□□□ -1.36
SMG6-215ENST00000574501 PP632Q6XCG6 107 aa6.55□□□□□ -1.36
SMG6-215ENST00000574501 CAMK2N1Q7Z7J9 78 aa6.55□□□□□ -1.36
SMG6-215ENST00000574501 MUC17Q685J3 4493 aa6.49□□□□□ -1.37
SMG6-215ENST00000574501 HERC1Q15751 4861 aa6.46□□□□□ -1.38
SMG6-215ENST00000574501 KRTAP4-1Q9BYQ7 146 aa6.37□□□□□ -1.39
SMG6-215ENST00000574501 TNP1P09430 55 aa6.3□□□□□ -1.4
SMG6-215ENST00000574501 SEC61BP60468 96 aaKnown RBP6.3□□□□□ -1.4
SMG6-215ENST00000574501 SPRR5A0A1B0GTR4 108 aa6.28□□□□□ -1.4
SMG6-215ENST00000574501 MUC2Q02817 5179 aa6.26□□□□□ -1.41
SMG6-215ENST00000574501 HMCN2Q8NDA2 5059 aa6.26□□□□□ -1.41
SMG6-215ENST00000574501 KRTAP19-2Q3LHN2 52 aa6.23□□□□□ -1.41
SMG6-215ENST00000574501 KRTAP23-1A1A580 65 aa6.17□□□□□ -1.42
SMG6-215ENST00000574501 FLGP20930 4061 aaPredicted RBP6.14□□□□□ -1.43
SMG6-215ENST00000574501 UBR4Q5T4S7 5183 aa6.13□□□□□ -1.43
SMG6-215ENST00000574501 RNF213Q63HN8 5207 aa6.05□□□□□ -1.44
SMG6-215ENST00000574501 PRO2289Q9P1D8 64 aa6□□□□□ -1.45
SMG6-215ENST00000574501 LCE3AQ5TA76 89 aa5.97□□□□□ -1.45
SMG6-215ENST00000574501 FAT4Q6V0I7 4981 aa5.89□□□□□ -1.47
SMG6-215ENST00000574501 INE1O15225 51 aa5.84□□□□□ -1.47
SMG6-215ENST00000574501 KRTAP19-1Q8IUB9 90 aa5.84□□□□□ -1.48
SMG6-215ENST00000574501 SPRR2GQ9BYE4 73 aa5.83□□□□□ -1.48
SMG6-215ENST00000574501 KRTAP8-1Q8IUC2 63 aa5.73□□□□□ -1.49
SMG6-215ENST00000574501 LCE2CQ5TA81 110 aa5.7□□□□□ -1.5
SMG6-215ENST00000574501 M0R2T5 61 aa5.67□□□□□ -1.5
SMG6-215ENST00000574501 KRTAP12-3P60328 96 aa5.64□□□□□ -1.51
SMG6-215ENST00000574501 KRTAP10-10P60014 251 aa5.6□□□□□ -1.51
SMG6-215ENST00000574501 MT1HP80294 61 aa5.6□□□□□ -1.51
SMG6-215ENST00000574501 MT1FP04733 61 aa5.59□□□□□ -1.51
SMG6-215ENST00000574501 KRTAP10-12P60413 245 aa5.59□□□□□ -1.51
SMG6-215ENST00000574501 KRTAP10-5P60370 271 aa5.56□□□□□ -1.52
SMG6-215ENST00000574501 MT2AP02795 61 aa5.54□□□□□ -1.52
SMG6-215ENST00000574501 MT1XP80297 61 aa5.54□□□□□ -1.52
SMG6-215ENST00000574501 LCE2AQ5TA79 106 aaPredicted RBP5.51□□□□□ -1.53
SMG6-215ENST00000574501 KRTAP10-7P60409 375 aaPredicted RBP5.47□□□□□ -1.53
SMG6-215ENST00000574501 KRTAP19-8Q3LI54 63 aa5.47□□□□□ -1.53
SMG6-215ENST00000574501 MT1BP07438 61 aa5.46□□□□□ -1.53
SMG6-215ENST00000574501 KRTAP9-8Q9BYQ0 159 aa5.45□□□□□ -1.54
SMG6-215ENST00000574501 LCE3CQ5T5A8 94 aa5.32□□□□□ -1.56
SMG6-215ENST00000574501 KRTAP19-5Q3LI72 72 aa5.3□□□□□ -1.56
SMG6-215ENST00000574501 KMT2DO14686 5537 aa5.29□□□□□ -1.56
SMG6-215ENST00000574501 KRTAP9-6A8MVA2 160 aa5.23□□□□□ -1.57
SMG6-215ENST00000574501 KRTAP9-3Q9BYQ3 159 aa5.18□□□□□ -1.58
SMG6-215ENST00000574501 FSIP2Q5CZC0 6907 aa5.18□□□□□ -1.58
SMG6-215ENST00000574501 USH2AO75445 5202 aa5.12□□□□□ -1.59
SMG6-215ENST00000574501 KRTAP2-3P0C7H8 128 aa5.1□□□□□ -1.59
SMG6-215ENST00000574501 KRTAP2-4Q9BYR9 128 aa5.1□□□□□ -1.59
SMG6-215ENST00000574501 KRTAP2-1Q9BYU5 128 aa5.1□□□□□ -1.59
SMG6-215ENST00000574501 KRTAP4-8A0A0G2JLE6 195 aa5.09□□□□□ -1.59
SMG6-215ENST00000574501 KRTAP4-8Q9BYQ9 185 aa5.09□□□□□ -1.59
SMG6-215ENST00000574501 KRTAP4-7Q9BYR0 210 aa5.08□□□□□ -1.6
SMG6-215ENST00000574501 LCE2BO14633 110 aa5.08□□□□□ -1.6
SMG6-215ENST00000574501 KRTAP9-6A0A140TA67 174 aa5.05□□□□□ -1.6
SMG6-215ENST00000574501 LCE2DQ5TA82 110 aaPredicted RBP5.04□□□□□ -1.6
SMG6-215ENST00000574501 KRTAP9-2Q9BYQ4 174 aa5□□□□□ -1.61
SMG6-215ENST00000574501 KRTAP19-7Q3SYF9 63 aa4.93□□□□□ -1.62
SMG6-215ENST00000574501 SSPOA2VEC9 5147 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms