RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SPRR2GQ9BYE4 73 aa9.48□□□□□ -0.89
VPS53-216ENST00000574029 CYP4F30PQ9H0H9 118 aa9.48□□□□□ -0.89
VPS53-216ENST00000574029 KRTAP3-1Q9BYR8 98 aa9.46□□□□□ -0.9
VPS53-216ENST00000574029 LOC101927531A0A1B0GV80 90 aa9.45□□□□□ -0.9
VPS53-216ENST00000574029 S4R3F8 94 aa9.43□□□□□ -0.9
VPS53-216ENST00000574029 C1orf64Q8NEQ6 169 aa9.42□□□□□ -0.9
VPS53-216ENST00000574029 ATOX1O00244 68 aa9.41□□□□□ -0.9
VPS53-216ENST00000574029 KRTAP10-5P60370 271 aa9.41□□□□□ -0.9
VPS53-216ENST00000574029 CSAG1Q6PB30 78 aa9.41□□□□□ -0.9
VPS53-216ENST00000574029 H0Y9P7 68 aa9.39□□□□□ -0.91
VPS53-216ENST00000574029 LCA10Q71F78 164 aa9.38□□□□□ -0.91
VPS53-216ENST00000574029 OCR1Q9BZK8 76 aa9.37□□□□□ -0.91
VPS53-216ENST00000574029 K7ERU9 68 aa9.35□□□□□ -0.91
VPS53-216ENST00000574029 KRTAP5-9P26371 169 aa9.35□□□□□ -0.91
VPS53-216ENST00000574029 KLKP1Q107X0 134 aa9.32□□□□□ -0.92
VPS53-216ENST00000574029 IMUPQ9GZP8 106 aa9.3□□□□□ -0.92
VPS53-216ENST00000574029 LINC00208Q96KT6 92 aa9.27□□□□□ -0.93
VPS53-216ENST00000574029 MP68P56378 58 aa9.26□□□□□ -0.93
VPS53-216ENST00000574029 SCGB1A1P11684 91 aa9.24□□□□□ -0.93
VPS53-216ENST00000574029 MT-ATP8P03928 68 aa9.23□□□□□ -0.93
VPS53-216ENST00000574029 H3BPC8 53 aa9.21□□□□□ -0.94
VPS53-216ENST00000574029 MDN1Q9NU22 5596 aa9.18□□□□□ -0.94
VPS53-216ENST00000574029 CRIPTQ9P021 101 aa9.17□□□□□ -0.94
VPS53-216ENST00000574029 A8MUN3 132 aa9.14□□□□□ -0.95
VPS53-216ENST00000574029 KMT2DO14686 5537 aa9.13□□□□□ -0.95
VPS53-216ENST00000574029 SMIM20Q8N5G0 67 aa9.1□□□□□ -0.95
VPS53-216ENST00000574029 KRTAP2-3P0C7H8 128 aa9.08□□□□□ -0.96
VPS53-216ENST00000574029 KRTAP2-4Q9BYR9 128 aa9.08□□□□□ -0.96
VPS53-216ENST00000574029 TRAV7A0A075B6U4 112 aa9.06□□□□□ -0.96
VPS53-216ENST00000574029 NDUFC1O43677 76 aa9.03□□□□□ -0.96
VPS53-216ENST00000574029 H0YAA0 97 aa8.96□□□□□ -0.98
VPS53-216ENST00000574029 DMAC1Q96GE9 116 aa8.96□□□□□ -0.98
VPS53-216ENST00000574029 SPRR2FQ96RM1 72 aa8.94□□□□□ -0.98
VPS53-216ENST00000574029 SPRR2EP22531 72 aa8.91□□□□□ -0.98
VPS53-216ENST00000574029 SPRR2BP35325 72 aa8.91□□□□□ -0.98
VPS53-216ENST00000574029 SPRR2AP35326 72 aa8.91□□□□□ -0.98
VPS53-216ENST00000574029 PRO2289Q9P1D8 64 aa8.89□□□□□ -0.99
VPS53-216ENST00000574029 MT1XP80297 61 aa8.86□□□□□ -0.99
VPS53-216ENST00000574029 SERP2Q8N6R1 65 aa8.84□□□□□ -0.99
VPS53-216ENST00000574029 ADM2Q7Z4H4 148 aa8.82□□□□□ -1
VPS53-216ENST00000574029 ACYP2P14621 99 aa8.8□□□□□ -1
VPS53-216ENST00000574029 SNURFQ9Y675 71 aa8.8□□□□□ -1
VPS53-216ENST00000574029 KRTAP8-1Q8IUC2 63 aa8.79□□□□□ -1
VPS53-216ENST00000574029 LCE1AQ5T7P2 110 aa8.76□□□□□ -1.01
VPS53-216ENST00000574029 C20orf197Q8N268 126 aa8.75□□□□□ -1.01
VPS53-216ENST00000574029 PLAC4Q8WY50 150 aa8.75□□□□□ -1.01
VPS53-216ENST00000574029 KRTAP12-2P59991 146 aa8.74□□□□□ -1.01
VPS53-216ENST00000574029 KRTAP2-2Q9BYT5 123 aa8.73□□□□□ -1.01
VPS53-216ENST00000574029 KRTAP2-1Q9BYU5 128 aa8.73□□□□□ -1.01
VPS53-216ENST00000574029 SPANXA2-OT1Q8N9U9 137 aa8.72□□□□□ -1.01
VPS53-216ENST00000574029 GPR98Q8WXG9 6306 aa8.67□□□□□ -1.02
VPS53-216ENST00000574029 COX7CP15954 63 aa8.64□□□□□ -1.03
VPS53-216ENST00000574029 SPTSSBQ8NFR3 76 aa8.63□□□□□ -1.03
VPS53-216ENST00000574029 P0C880 135 aa8.62□□□□□ -1.03
VPS53-216ENST00000574029 R4GN34 69 aa8.62□□□□□ -1.03
VPS53-216ENST00000574029 KRTAP4-8A0A0G2JLE6 195 aa8.61□□□□□ -1.03
VPS53-216ENST00000574029 SPRR2DP22532 72 aa8.61□□□□□ -1.03
VPS53-216ENST00000574029 KRTAP4-8Q9BYQ9 185 aa8.61□□□□□ -1.03
VPS53-216ENST00000574029 CHKB-CPT1BH3BT56 60 aa8.58□□□□□ -1.04
VPS53-216ENST00000574029 M0QZ58 72 aa8.54□□□□□ -1.04
VPS53-216ENST00000574029 H7BZZ5 65 aa8.45□□□□□ -1.06
VPS53-216ENST00000574029 KRTAP10-7P60409 375 aaPredicted RBP8.45□□□□□ -1.06
VPS53-216ENST00000574029 CYSTM1Q9H1C7 97 aa8.44□□□□□ -1.06
VPS53-216ENST00000574029 KRTAP10-12P60413 245 aa8.43□□□□□ -1.06
VPS53-216ENST00000574029 ANAPC13Q9BS18 74 aa8.43□□□□□ -1.06
VPS53-216ENST00000574029 LINC01554Q52M75 96 aa8.42□□□□□ -1.06
VPS53-216ENST00000574029 LCE3BQ5TA77 95 aa8.42□□□□□ -1.06
VPS53-216ENST00000574029 COA5Q86WW8 74 aa8.41□□□□□ -1.06
VPS53-216ENST00000574029 CCDC179H3BU77 68 aa8.26□□□□□ -1.09
VPS53-216ENST00000574029 SEC61GP60059 68 aa8.17□□□□□ -1.1
VPS53-216ENST00000574029 KRTAP13-4Q3LI77 160 aa8.16□□□□□ -1.1
VPS53-216ENST00000574029 SERP1Q9Y6X1 66 aa8.15□□□□□ -1.1
VPS53-216ENST00000574029 ATP5EP56381 51 aaPredicted RBP8.11□□□□□ -1.11
VPS53-216ENST00000574029 DSTQ03001 7570 aaKnown RBP8.04□□□□□ -1.12
VPS53-216ENST00000574029 A0A1B0GU33 70 aa8.03□□□□□ -1.12
VPS53-216ENST00000574029 A0A1B0GU69 56 aa7.98□□□□□ -1.13
VPS53-216ENST00000574029 TMEM258P61165 79 aa7.98□□□□□ -1.13
VPS53-216ENST00000574029 LCE5AQ5TCM9 118 aa7.97□□□□□ -1.13
VPS53-216ENST00000574029 SPATA8Q6RVD6 105 aa7.95□□□□□ -1.14
VPS53-216ENST00000574029 KRTAP19-7Q3SYF9 63 aa7.94□□□□□ -1.14
VPS53-216ENST00000574029 KRTAP4-9Q9BYQ8 210 aa7.92□□□□□ -1.14
VPS53-216ENST00000574029 KRTAP19-3Q7Z4W3 81 aa7.89□□□□□ -1.15
VPS53-216ENST00000574029 A0A0D9SG42 100 aa7.88□□□□□ -1.15
VPS53-216ENST00000574029 MT1EP04732 61 aa7.88□□□□□ -1.15
VPS53-216ENST00000574029 CAMK2N1Q7Z7J9 78 aa7.87□□□□□ -1.15
VPS53-216ENST00000574029 LINC01558Q9Y6Z2 57 aa7.84□□□□□ -1.15
VPS53-216ENST00000574029 PRR15LQ9BU68 103 aa7.82□□□□□ -1.16
VPS53-216ENST00000574029 SMIM26A0A096LP01 95 aa7.8□□□□□ -1.16
VPS53-216ENST00000574029 KRTAP12-1P59990 96 aa7.79□□□□□ -1.16
VPS53-216ENST00000574029 SPINT4Q6UDR6 99 aa7.78□□□□□ -1.16
VPS53-216ENST00000574029 LCE1DQ5T752 114 aa7.71□□□□□ -1.18
VPS53-216ENST00000574029 A8MU10 97 aa7.7□□□□□ -1.18
VPS53-216ENST00000574029 HMCN1Q96RW7 5635 aa7.68□□□□□ -1.18
VPS53-216ENST00000574029 MT1GP13640 62 aa7.67□□□□□ -1.18
VPS53-216ENST00000574029 AHNAK2Q8IVF2 5795 aa7.66□□□□□ -1.18
VPS53-216ENST00000574029 KRTAP19-5Q3LI72 72 aa7.62□□□□□ -1.19
VPS53-216ENST00000574029 LCE4AQ5TA78 99 aa7.61□□□□□ -1.19
VPS53-216ENST00000574029 PP632Q6XCG6 107 aa7.59□□□□□ -1.19
VPS53-216ENST00000574029 UQCR11O14957 56 aa7.58□□□□□ -1.2
VPS53-216ENST00000574029 MT4P47944 62 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms