RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	TP53AIP1	Q9HCN2	124 aa		7.53	□□□□□ -1.2
CLN3-231	ENST00000568422	KRTAP10-5	P60370	271 aa		7.51	□□□□□ -1.21
CLN3-231	ENST00000568422	KLKP1	Q107X0	134 aa		7.51	□□□□□ -1.21
CLN3-231	ENST00000568422		A0A087WVE0	104 aa		7.45	□□□□□ -1.22
CLN3-231	ENST00000568422	MT-ATP8	P03928	68 aa		7.44	□□□□□ -1.22
CLN3-231	ENST00000568422	HIST1H4A	P62805	103 aa	Known RBP	7.44	□□□□□ -1.22
CLN3-231	ENST00000568422	CRIPT	Q9P021	101 aa		7.44	□□□□□ -1.22
CLN3-231	ENST00000568422	KRTAP3-3	Q9BYR6	98 aa		7.42	□□□□□ -1.22
CLN3-231	ENST00000568422	KRTAP5-9	P26371	169 aa		7.4	□□□□□ -1.22
CLN3-231	ENST00000568422	CYP4F30P	Q9H0H9	118 aa		7.39	□□□□□ -1.23
CLN3-231	ENST00000568422	KRTAP20-1	Q3LI63	56 aa		7.37	□□□□□ -1.23
CLN3-231	ENST00000568422	IMUP	Q9GZP8	106 aa		7.37	□□□□□ -1.23
CLN3-231	ENST00000568422	LOC101927531	A0A1B0GV80	90 aa		7.32	□□□□□ -1.24
CLN3-231	ENST00000568422	KMT2D	O14686	5537 aa		7.32	□□□□□ -1.24
CLN3-231	ENST00000568422	TRAV22	A0A0B4J277	110 aa		7.31	□□□□□ -1.24
CLN3-231	ENST00000568422	MDN1	Q9NU22	5596 aa		7.3	□□□□□ -1.24
CLN3-231	ENST00000568422		H0YAA0	97 aa		7.27	□□□□□ -1.25
CLN3-231	ENST00000568422	OCR1	Q9BZK8	76 aa		7.27	□□□□□ -1.25
CLN3-231	ENST00000568422	NDUFC1	O43677	76 aa		7.26	□□□□□ -1.25
CLN3-231	ENST00000568422	UQCRQ	O14949	82 aa		7.22	□□□□□ -1.25
CLN3-231	ENST00000568422	ATOX1	O00244	68 aa		7.2	□□□□□ -1.26
CLN3-231	ENST00000568422	SCGB1A1	P11684	91 aa		7.18	□□□□□ -1.26
CLN3-231	ENST00000568422	PRO2289	Q9P1D8	64 aa		7.18	□□□□□ -1.26
CLN3-231	ENST00000568422		A8MUN3	132 aa		7.16	□□□□□ -1.26
CLN3-231	ENST00000568422		H0Y9P7	68 aa		7.16	□□□□□ -1.26
CLN3-231	ENST00000568422	KRTAP2-3	P0C7H8	128 aa		7.14	□□□□□ -1.27
CLN3-231	ENST00000568422	ADM2	Q7Z4H4	148 aa		7.14	□□□□□ -1.27
CLN3-231	ENST00000568422	KRTAP2-4	Q9BYR9	128 aa		7.14	□□□□□ -1.27
CLN3-231	ENST00000568422	TRAV7	A0A075B6U4	112 aa		7.11	□□□□□ -1.27
CLN3-231	ENST00000568422	SMIM20	Q8N5G0	67 aa		7.11	□□□□□ -1.27
CLN3-231	ENST00000568422	SPRR2F	Q96RM1	72 aa		7.1	□□□□□ -1.27
CLN3-231	ENST00000568422	PLAC4	Q8WY50	150 aa		7.08	□□□□□ -1.28
CLN3-231	ENST00000568422	LINC00208	Q96KT6	92 aa		7.08	□□□□□ -1.28
CLN3-231	ENST00000568422	MP68	P56378	58 aa		7.07	□□□□□ -1.28
CLN3-231	ENST00000568422	MT1X	P80297	61 aa		7.07	□□□□□ -1.28
CLN3-231	ENST00000568422		H3BPC8	53 aa		7.05	□□□□□ -1.28
CLN3-231	ENST00000568422	SPRR2E	P22531	72 aa		7.05	□□□□□ -1.28
CLN3-231	ENST00000568422	SPRR2B	P35325	72 aa		7.05	□□□□□ -1.28
CLN3-231	ENST00000568422	SPRR2A	P35326	72 aa		7.05	□□□□□ -1.28
CLN3-231	ENST00000568422	SERP2	Q8N6R1	65 aa		7.04	□□□□□ -1.28
CLN3-231	ENST00000568422	KRTAP8-1	Q8IUC2	63 aa		7.01	□□□□□ -1.29
CLN3-231	ENST00000568422		R4GN34	69 aa		7.01	□□□□□ -1.29
CLN3-231	ENST00000568422	KRTAP12-2	P59991	146 aa		7	□□□□□ -1.29
CLN3-231	ENST00000568422	C20orf197	Q8N268	126 aa		7	□□□□□ -1.29
CLN3-231	ENST00000568422	COX7C	P15954	63 aa		6.95	□□□□□ -1.3
CLN3-231	ENST00000568422	LCE1A	Q5T7P2	110 aa		6.93	□□□□□ -1.3
CLN3-231	ENST00000568422	SNURF	Q9Y675	71 aa		6.93	□□□□□ -1.3
CLN3-231	ENST00000568422		M0QZ58	72 aa		6.92	□□□□□ -1.3
CLN3-231	ENST00000568422		P0C880	135 aa		6.92	□□□□□ -1.3
CLN3-231	ENST00000568422	ANAPC13	Q9BS18	74 aa		6.92	□□□□□ -1.3
CLN3-231	ENST00000568422	KRTAP2-2	Q9BYT5	123 aa		6.9	□□□□□ -1.3
CLN3-231	ENST00000568422	KRTAP2-1	Q9BYU5	128 aa		6.9	□□□□□ -1.3
CLN3-231	ENST00000568422	CYSTM1	Q9H1C7	97 aa		6.86	□□□□□ -1.31
CLN3-231	ENST00000568422	DMAC1	Q96GE9	116 aa		6.84	□□□□□ -1.31
CLN3-231	ENST00000568422	KRTAP3-2	Q9BYR7	98 aa		6.83	□□□□□ -1.32
CLN3-231	ENST00000568422	KRTAP4-8	A0A0G2JLE6	195 aa		6.82	□□□□□ -1.32
CLN3-231	ENST00000568422	CCDC179	H3BU77	68 aa		6.82	□□□□□ -1.32
CLN3-231	ENST00000568422	SPRR2D	P22532	72 aa		6.82	□□□□□ -1.32
CLN3-231	ENST00000568422	KRTAP4-8	Q9BYQ9	185 aa		6.82	□□□□□ -1.32
CLN3-231	ENST00000568422	LINC01554	Q52M75	96 aa		6.81	□□□□□ -1.32
CLN3-231	ENST00000568422		H7BZZ5	65 aa		6.78	□□□□□ -1.32
CLN3-231	ENST00000568422	SPANXA2-OT1	Q8N9U9	137 aa		6.78	□□□□□ -1.32
CLN3-231	ENST00000568422	KRTAP10-12	P60413	245 aa		6.74	□□□□□ -1.33
CLN3-231	ENST00000568422	KRTAP10-7	P60409	375 aa	Predicted RBP	6.73	□□□□□ -1.33
CLN3-231	ENST00000568422	ACYP2	P14621	99 aa		6.67	□□□□□ -1.34
CLN3-231	ENST00000568422	LCE3B	Q5TA77	95 aa		6.66	□□□□□ -1.34
CLN3-231	ENST00000568422	SPTSSB	Q8NFR3	76 aa		6.65	□□□□□ -1.34
CLN3-231	ENST00000568422	SVIP	Q8NHG7	77 aa		6.6	□□□□□ -1.35
CLN3-231	ENST00000568422	COA5	Q86WW8	74 aa		6.57	□□□□□ -1.36
CLN3-231	ENST00000568422	PCP4	P48539	62 aa		6.56	□□□□□ -1.36
CLN3-231	ENST00000568422	TMEM258	P61165	79 aa		6.55	□□□□□ -1.36
CLN3-231	ENST00000568422	CHKB-CPT1B	H3BT56	60 aa		6.53	□□□□□ -1.36
CLN3-231	ENST00000568422	ATP5E	P56381	51 aa	Predicted RBP	6.53	□□□□□ -1.36
CLN3-231	ENST00000568422	CAMK2N1	Q7Z7J9	78 aa		6.4	□□□□□ -1.38
CLN3-231	ENST00000568422	KRTAP13-4	Q3LI77	160 aa		6.36	□□□□□ -1.39
CLN3-231	ENST00000568422	LCE5A	Q5TCM9	118 aa		6.35	□□□□□ -1.39
CLN3-231	ENST00000568422	DST	Q03001	7570 aa	Known RBP	6.35	□□□□□ -1.39
CLN3-231	ENST00000568422	SERP1	Q9Y6X1	66 aa		6.34	□□□□□ -1.39
CLN3-231	ENST00000568422	KRTAP19-7	Q3SYF9	63 aa		6.33	□□□□□ -1.4
CLN3-231	ENST00000568422	KRTAP19-3	Q7Z4W3	81 aa		6.3	□□□□□ -1.4
CLN3-231	ENST00000568422	GPR98	Q8WXG9	6306 aa		6.3	□□□□□ -1.4
CLN3-231	ENST00000568422	MT1E	P04732	61 aa		6.28	□□□□□ -1.4
CLN3-231	ENST00000568422	KRTAP4-9	Q9BYQ8	210 aa		6.22	□□□□□ -1.41
CLN3-231	ENST00000568422	LINC01558	Q9Y6Z2	57 aa		6.21	□□□□□ -1.42
CLN3-231	ENST00000568422	SEC61G	P60059	68 aa		6.19	□□□□□ -1.42
CLN3-231	ENST00000568422		A0A1B0GU69	56 aa		6.18	□□□□□ -1.42
CLN3-231	ENST00000568422		A0A0D9SG42	100 aa		6.16	□□□□□ -1.42
CLN3-231	ENST00000568422	RPS28	P62857	69 aa	Known RBP	6.16	□□□□□ -1.42
CLN3-231	ENST00000568422	MT1G	P13640	62 aa		6.15	□□□□□ -1.42
CLN3-231	ENST00000568422	PP632	Q6XCG6	107 aa		6.12	□□□□□ -1.43
CLN3-231	ENST00000568422	SMIM26	A0A096LP01	95 aa		6.1	□□□□□ -1.43
CLN3-231	ENST00000568422		A0A1B0GU33	70 aa		6.1	□□□□□ -1.43
CLN3-231	ENST00000568422		Q1T7F1	81 aa		6.1	□□□□□ -1.43
CLN3-231	ENST00000568422	KRTAP19-5	Q3LI72	72 aa		6.1	□□□□□ -1.43
CLN3-231	ENST00000568422	SPINT4	Q6UDR6	99 aa		6.09	□□□□□ -1.43
CLN3-231	ENST00000568422	LCE1D	Q5T752	114 aa		6.08	□□□□□ -1.44
CLN3-231	ENST00000568422	SPATA8	Q6RVD6	105 aa		6.08	□□□□□ -1.44
CLN3-231	ENST00000568422	PRR15L	Q9BU68	103 aa		6.08	□□□□□ -1.44
CLN3-231	ENST00000568422		V9GYY9	64 aa		6.05	□□□□□ -1.44
CLN3-231	ENST00000568422	LCE4A	Q5TA78	99 aa		6.04	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 159.1 ms