RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 A0A1B0GV90 55 aa6.88□□□□□ -1.31
CDH3-205ENST00000566808 CASC2Q6XLA1 102 aa6.87□□□□□ -1.31
CDH3-205ENST00000566808 C14orf132Q9NPU4 83 aa6.87□□□□□ -1.31
CDH3-205ENST00000566808 A8MUN3 132 aa6.85□□□□□ -1.31
CDH3-205ENST00000566808 PLAC4Q8WY50 150 aa6.85□□□□□ -1.31
CDH3-205ENST00000566808 KRTAP4-9Q9BYQ8 210 aa6.82□□□□□ -1.32
CDH3-205ENST00000566808 BPY2O14599 106 aa6.81□□□□□ -1.32
CDH3-205ENST00000566808 TSTD3H0UI37 97 aa6.79□□□□□ -1.32
CDH3-205ENST00000566808 H0YAA0 97 aa6.79□□□□□ -1.32
CDH3-205ENST00000566808 ATXN8Q156A1 80 aa6.79□□□□□ -1.32
CDH3-205ENST00000566808 KRTAP3-2Q9BYR7 98 aa6.78□□□□□ -1.32
CDH3-205ENST00000566808 Q8N9L7 120 aa6.76□□□□□ -1.33
CDH3-205ENST00000566808 A0A087WVE0 104 aa6.72□□□□□ -1.33
CDH3-205ENST00000566808 KRTAP10-7P60409 375 aaPredicted RBP6.7□□□□□ -1.34
CDH3-205ENST00000566808 KRTAP10-12P60413 245 aa6.68□□□□□ -1.34
CDH3-205ENST00000566808 PYY3Q5JQD4 70 aa6.68□□□□□ -1.34
CDH3-205ENST00000566808 M0R143 59 aa6.67□□□□□ -1.34
CDH3-205ENST00000566808 ADM2Q7Z4H4 148 aa6.67□□□□□ -1.34
CDH3-205ENST00000566808 HMCN1Q96RW7 5635 aa6.64□□□□□ -1.35
CDH3-205ENST00000566808 NDUFC1O43677 76 aa6.63□□□□□ -1.35
CDH3-205ENST00000566808 LCE1DQ5T752 114 aa6.62□□□□□ -1.35
CDH3-205ENST00000566808 AHNAK2Q8IVF2 5795 aa6.6□□□□□ -1.35
CDH3-205ENST00000566808 R4GN34 69 aa6.58□□□□□ -1.36
CDH3-205ENST00000566808 TP53AIP1Q9HCN2 124 aa6.57□□□□□ -1.36
CDH3-205ENST00000566808 NAA38Q9BRA0 125 aaKnown RBP6.56□□□□□ -1.36
CDH3-205ENST00000566808 UQCR10Q9UDW1 63 aa6.56□□□□□ -1.36
CDH3-205ENST00000566808 CYP4F30PQ9H0H9 118 aa6.55□□□□□ -1.36
CDH3-205ENST00000566808 COL5A1-AS1Q5SY13 56 aa6.54□□□□□ -1.36
CDH3-205ENST00000566808 SCGB1A1P11684 91 aa6.52□□□□□ -1.37
CDH3-205ENST00000566808 LCE5AQ5TCM9 118 aa6.51□□□□□ -1.37
CDH3-205ENST00000566808 KRTAP5-10Q6L8G5 202 aa6.51□□□□□ -1.37
CDH3-205ENST00000566808 M0QZ58 72 aa6.48□□□□□ -1.37
CDH3-205ENST00000566808 K7ERU9 68 aa6.47□□□□□ -1.37
CDH3-205ENST00000566808 K7EP34 96 aa6.46□□□□□ -1.38
CDH3-205ENST00000566808 C20orf197Q8N268 126 aa6.45□□□□□ -1.38
CDH3-205ENST00000566808 H3BT86 120 aa6.44□□□□□ -1.38
CDH3-205ENST00000566808 MT4P47944 62 aa6.44□□□□□ -1.38
CDH3-205ENST00000566808 LCE4AQ5TA78 99 aa6.43□□□□□ -1.38
CDH3-205ENST00000566808 P0C880 135 aa6.42□□□□□ -1.38
CDH3-205ENST00000566808 LINC01554Q52M75 96 aa6.42□□□□□ -1.38
CDH3-205ENST00000566808 LOC101927531A0A1B0GV80 90 aa6.41□□□□□ -1.38
CDH3-205ENST00000566808 KRTAP19-3Q7Z4W3 81 aa6.39□□□□□ -1.39
CDH3-205ENST00000566808 UBL5Q9BZL1 73 aa6.38□□□□□ -1.39
CDH3-205ENST00000566808 TRAV22A0A0B4J277 110 aa6.37□□□□□ -1.39
CDH3-205ENST00000566808 ACYP1P07311 99 aa6.37□□□□□ -1.39
CDH3-205ENST00000566808 KRTAP5-7Q6L8G8 165 aa6.37□□□□□ -1.39
CDH3-205ENST00000566808 BATFQ16520 125 aa6.35□□□□□ -1.39
CDH3-205ENST00000566808 KRTAP19-7Q3SYF9 63 aa6.31□□□□□ -1.4
CDH3-205ENST00000566808 CYSTM1Q9H1C7 97 aa6.31□□□□□ -1.4
CDH3-205ENST00000566808 MT1EP04732 61 aa6.3□□□□□ -1.4
CDH3-205ENST00000566808 GTF2H5Q6ZYL4 71 aa6.25□□□□□ -1.41
CDH3-205ENST00000566808 J3QR89 54 aa6.22□□□□□ -1.41
CDH3-205ENST00000566808 SPCS1Q9Y6A9 102 aa6.22□□□□□ -1.41
CDH3-205ENST00000566808 TAX1BP3O14907 124 aa6.21□□□□□ -1.42
CDH3-205ENST00000566808 KRTAP5-3Q6L8H2 238 aa6.19□□□□□ -1.42
CDH3-205ENST00000566808 KRTAP5-4Q6L8H1 288 aa6.18□□□□□ -1.42
CDH3-205ENST00000566808 ATOX1O00244 68 aa6.17□□□□□ -1.42
CDH3-205ENST00000566808 KRTAP4-6Q9BYQ5 205 aa6.16□□□□□ -1.42
CDH3-205ENST00000566808 MT-ATP8P03928 68 aa6.15□□□□□ -1.42
CDH3-205ENST00000566808 MT1GP13640 62 aa6.15□□□□□ -1.42
CDH3-205ENST00000566808 H0Y9P7 68 aa6.14□□□□□ -1.43
CDH3-205ENST00000566808 PP632Q6XCG6 107 aa6.14□□□□□ -1.43
CDH3-205ENST00000566808 SPRR5A0A1B0GTR4 108 aa6.12□□□□□ -1.43
CDH3-205ENST00000566808 A0A1W2PPM0 123 aa6.12□□□□□ -1.43
CDH3-205ENST00000566808 C9orf118A6NHY6 69 aa6.12□□□□□ -1.43
CDH3-205ENST00000566808 UQCRQO14949 82 aa6.09□□□□□ -1.43
CDH3-205ENST00000566808 SMIM20Q8N5G0 67 aa6.07□□□□□ -1.44
CDH3-205ENST00000566808 F8W1H4 67 aa6.06□□□□□ -1.44
CDH3-205ENST00000566808 ANAPC13Q9BS18 74 aa6.06□□□□□ -1.44
CDH3-205ENST00000566808 MT1MQ8N339 61 aa6.05□□□□□ -1.44
CDH3-205ENST00000566808 LINC00208Q96KT6 92 aa5.96□□□□□ -1.46
CDH3-205ENST00000566808 KRTAP19-5Q3LI72 72 aa5.95□□□□□ -1.46
CDH3-205ENST00000566808 CAMK2N1Q7Z7J9 78 aa5.94□□□□□ -1.46
CDH3-205ENST00000566808 DMAC1Q96GE9 116 aa5.92□□□□□ -1.46
CDH3-205ENST00000566808 RPS28P62857 69 aaKnown RBP5.91□□□□□ -1.46
CDH3-205ENST00000566808 PRO0461Q9UI25 63 aa5.91□□□□□ -1.46
CDH3-205ENST00000566808 MT1LQ93083 61 aa5.9□□□□□ -1.46
CDH3-205ENST00000566808 ETDBQ3ZM63 59 aa5.89□□□□□ -1.47
CDH3-205ENST00000566808 KRTAP4-3Q9BYR4 195 aa5.89□□□□□ -1.47
CDH3-205ENST00000566808 CCDC179H3BU77 68 aa5.88□□□□□ -1.47
CDH3-205ENST00000566808 KRTAP20-2Q3LI61 65 aa5.88□□□□□ -1.47
CDH3-205ENST00000566808 A0A0D9SG42 100 aa5.84□□□□□ -1.47
CDH3-205ENST00000566808 MP68P56378 58 aa5.83□□□□□ -1.48
CDH3-205ENST00000566808 HIST1H4AP62805 103 aaKnown RBP5.82□□□□□ -1.48
CDH3-205ENST00000566808 SEC61GP60059 68 aa5.8□□□□□ -1.48
CDH3-205ENST00000566808 ATP5EP2Q5VTU8 51 aa5.8□□□□□ -1.48
CDH3-205ENST00000566808 TRAV7A0A075B6U4 112 aa5.77□□□□□ -1.49
CDH3-205ENST00000566808 PRO0628Q9UI54 55 aa5.77□□□□□ -1.49
CDH3-205ENST00000566808 V9GYY9 64 aa5.74□□□□□ -1.49
CDH3-205ENST00000566808 AHNAKQ09666 5890 aaKnown RBP5.73□□□□□ -1.49
CDH3-205ENST00000566808 FAM240AA0A1B0GVK7 77 aa5.72□□□□□ -1.49
CDH3-205ENST00000566808 TMEM258P61165 79 aa5.72□□□□□ -1.49
CDH3-205ENST00000566808 SPTSSBQ8NFR3 76 aa5.72□□□□□ -1.49
CDH3-205ENST00000566808 KRTAP13-4Q3LI77 160 aa5.7□□□□□ -1.5
CDH3-205ENST00000566808 OCR1Q9BZK8 76 aa5.7□□□□□ -1.5
CDH3-205ENST00000566808 COX7CP15954 63 aa5.67□□□□□ -1.5
CDH3-205ENST00000566808 H3BPC8 53 aa5.66□□□□□ -1.5
CDH3-205ENST00000566808 KRTAP12-4P60329 112 aa5.65□□□□□ -1.5
CDH3-205ENST00000566808 MUC5ACP98088 5654 aa5.62□□□□□ -1.51
CDH3-205ENST00000566808 KRTAP5-5Q701N2 237 aaPredicted RBP5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms