RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 H0YAA0 97 aa3.2□□□□□ -1.9
CLN3-223ENST00000566472 KRTAP17-1Q9BYP8 105 aa3.2□□□□□ -1.9
CLN3-223ENST00000566472 S4R3F8 94 aa3.2□□□□□ -1.9
CLN3-223ENST00000566472 TNXBP22105 4242 aa3.2□□□□□ -1.9
CLN3-223ENST00000566472 RBM12B-AS1Q9P1G2 102 aa3.18□□□□□ -1.9
CLN3-223ENST00000566472 HSPG2P98160 4391 aa3.18□□□□□ -1.9
CLN3-223ENST00000566472 KMT2CQ8NEZ4 4911 aaKnown RBP3.17□□□□□ -1.9
CLN3-223ENST00000566472 K7ERS5 55 aa3.16□□□□□ -1.9
CLN3-223ENST00000566472 KRTAP10-6P60371 365 aaPredicted RBP3.14□□□□□ -1.91
CLN3-223ENST00000566472 LRP1Q07954 4544 aaKnown RBP3.12□□□□□ -1.91
CLN3-223ENST00000566472 H3BS24 57 aa3.12□□□□□ -1.91
CLN3-223ENST00000566472 PRAC1Q96KF2 57 aa3.12□□□□□ -1.91
CLN3-223ENST00000566472 SEC61BP60468 96 aaKnown RBP3.11□□□□□ -1.91
CLN3-223ENST00000566472 ADM2Q7Z4H4 148 aa3.11□□□□□ -1.91
CLN3-223ENST00000566472 CSAG1Q6PB30 78 aa3.1□□□□□ -1.91
CLN3-223ENST00000566472 RYR3Q15413 4870 aa3.1□□□□□ -1.91
CLN3-223ENST00000566472 KRTAP13-4Q3LI77 160 aa3.07□□□□□ -1.92
CLN3-223ENST00000566472 MYCBP2O75592 4640 aa3.07□□□□□ -1.92
CLN3-223ENST00000566472 M0QZ58 72 aa3.06□□□□□ -1.92
CLN3-223ENST00000566472 P0C880 135 aa3.06□□□□□ -1.92
CLN3-223ENST00000566472 KIAA1109Q2LD37 5005 aa3.06□□□□□ -1.92
CLN3-223ENST00000566472 LINC01554Q52M75 96 aa3.06□□□□□ -1.92
CLN3-223ENST00000566472 KRTAP4-5Q9BYR2 181 aa3.06□□□□□ -1.92
CLN3-223ENST00000566472 DMBT1Q9UGM3 2413 aaPredicted RBP3.06□□□□□ -1.92
CLN3-223ENST00000566472 ROMO1P60602 79 aa3.05□□□□□ -1.92
CLN3-223ENST00000566472 KRTAP25-1Q3LHN0 102 aa3.04□□□□□ -1.92
CLN3-223ENST00000566472 A0A0D9SG42 100 aa3.02□□□□□ -1.93
CLN3-223ENST00000566472 KRTAP12-1P59990 96 aa2.98□□□□□ -1.93
CLN3-223ENST00000566472 EPPK1P58107 5090 aaKnown RBP2.98□□□□□ -1.93
CLN3-223ENST00000566472 KRTAP12-2P59991 146 aa2.97□□□□□ -1.93
CLN3-223ENST00000566472 KRTAP4-1Q9BYQ7 146 aa2.97□□□□□ -1.93
CLN3-223ENST00000566472 MUC17Q685J3 4493 aa2.96□□□□□ -1.94
CLN3-223ENST00000566472 KRTAP19-2Q3LHN2 52 aa2.95□□□□□ -1.94
CLN3-223ENST00000566472 SPINT4Q6UDR6 99 aa2.95□□□□□ -1.94
CLN3-223ENST00000566472 R4GN34 69 aa2.94□□□□□ -1.94
CLN3-223ENST00000566472 HERC2O95714 4834 aa2.92□□□□□ -1.94
CLN3-223ENST00000566472 BIRC6Q9NR09 4857 aa2.92□□□□□ -1.94
CLN3-223ENST00000566472 LRP2P98164 4655 aa2.92□□□□□ -1.94
CLN3-223ENST00000566472 CRIPTQ9P021 101 aa2.91□□□□□ -1.94
CLN3-223ENST00000566472 ABCA13Q86UQ4 5058 aa2.88□□□□□ -1.95
CLN3-223ENST00000566472 LPAP08519 4548 aa2.87□□□□□ -1.95
CLN3-223ENST00000566472 LORP23490 312 aaPredicted RBP2.86□□□□□ -1.95
CLN3-223ENST00000566472 C10orf95Q9H7T3 257 aa2.84□□□□□ -1.95
CLN3-223ENST00000566472 LCE2BO14633 110 aa2.79□□□□□ -1.96
CLN3-223ENST00000566472 LCE2CQ5TA81 110 aa2.79□□□□□ -1.96
CLN3-223ENST00000566472 PP632Q6XCG6 107 aa2.78□□□□□ -1.96
CLN3-223ENST00000566472 CAMK2N1Q7Z7J9 78 aa2.78□□□□□ -1.96
CLN3-223ENST00000566472 HERC1Q15751 4861 aa2.78□□□□□ -1.96
CLN3-223ENST00000566472 LCE2AQ5TA79 106 aaPredicted RBP2.76□□□□□ -1.97
CLN3-223ENST00000566472 FLGP20930 4061 aaPredicted RBP2.75□□□□□ -1.97
CLN3-223ENST00000566472 A0A0A0MQY5 61 aa2.74□□□□□ -1.97
CLN3-223ENST00000566472 LOC100996750A0A140TA64 210 aa2.74□□□□□ -1.97
CLN3-223ENST00000566472 KRTAP23-1A1A580 65 aa2.74□□□□□ -1.97
CLN3-223ENST00000566472 KRTAP15-1Q3LI76 137 aa2.74□□□□□ -1.97
CLN3-223ENST00000566472 SPRR2GQ9BYE4 73 aa2.74□□□□□ -1.97
CLN3-223ENST00000566472 KRTAP4-6Q9BYQ5 205 aa2.74□□□□□ -1.97
CLN3-223ENST00000566472 HMCN2Q8NDA2 5059 aa2.73□□□□□ -1.97
CLN3-223ENST00000566472 MT1HP80294 61 aa2.73□□□□□ -1.97
CLN3-223ENST00000566472 PCLOQ9Y6V0 5065 aa2.72□□□□□ -1.97
CLN3-223ENST00000566472 TNP1P09430 55 aa2.71□□□□□ -1.98
CLN3-223ENST00000566472 M0R2T5 61 aa2.7□□□□□ -1.98
CLN3-223ENST00000566472 KRTAP19-1Q8IUB9 90 aa2.69□□□□□ -1.98
CLN3-223ENST00000566472 PLAC4Q8WY50 150 aa2.69□□□□□ -1.98
CLN3-223ENST00000566472 MT2AP02795 61 aa2.67□□□□□ -1.98
CLN3-223ENST00000566472 KRTAP19-8Q3LI54 63 aa2.66□□□□□ -1.98
CLN3-223ENST00000566472 MT1FP04733 61 aa2.65□□□□□ -1.99
CLN3-223ENST00000566472 KRTAP9-8Q9BYQ0 159 aa2.65□□□□□ -1.99
CLN3-223ENST00000566472 KRTAP10-10P60014 251 aa2.64□□□□□ -1.99
CLN3-223ENST00000566472 NDUFAF8A1L188 74 aa2.6□□□□□ -1.99
CLN3-223ENST00000566472 RNF213Q63HN8 5207 aa2.57□□□□□ -2
CLN3-223ENST00000566472 MT1BP07438 61 aa2.57□□□□□ -2
CLN3-223ENST00000566472 KRTAP9-3Q9BYQ3 159 aa2.55□□□□□ -2
CLN3-223ENST00000566472 MUC2Q02817 5179 aa2.55□□□□□ -2
CLN3-223ENST00000566472 SPRR5A0A1B0GTR4 108 aa2.54□□□□□ -2
CLN3-223ENST00000566472 LUZP6Q538Z0 58 aa2.54□□□□□ -2
CLN3-223ENST00000566472 KRTAP10-5P60370 271 aa2.53□□□□□ -2
CLN3-223ENST00000566472 MT1XP80297 61 aa2.53□□□□□ -2
CLN3-223ENST00000566472 LCE3AQ5TA76 89 aa2.53□□□□□ -2
CLN3-223ENST00000566472 KRTAP8-1Q8IUC2 63 aa2.52□□□□□ -2.01
CLN3-223ENST00000566472 FAT4Q6V0I7 4981 aa2.52□□□□□ -2.01
CLN3-223ENST00000566472 PRO2289Q9P1D8 64 aa2.51□□□□□ -2.01
CLN3-223ENST00000566472 UBR4Q5T4S7 5183 aa2.5□□□□□ -2.01
CLN3-223ENST00000566472 KRTAP10-12P60413 245 aa2.48□□□□□ -2.01
CLN3-223ENST00000566472 KRTAP12-3P60328 96 aa2.43□□□□□ -2.02
CLN3-223ENST00000566472 KRTAP19-4Q3LI73 84 aa2.43□□□□□ -2.02
CLN3-223ENST00000566472 KRTAP10-7P60409 375 aaPredicted RBP2.42□□□□□ -2.02
CLN3-223ENST00000566472 KRTAP5-3Q6L8H2 238 aa2.41□□□□□ -2.02
CLN3-223ENST00000566472 KRTAP19-5Q3LI72 72 aa2.33□□□□□ -2.04
CLN3-223ENST00000566472 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.28□□□□□ -2.04
CLN3-223ENST00000566472 LCE3CQ5T5A8 94 aa2.28□□□□□ -2.04
CLN3-223ENST00000566472 KRTAP19-6Q3LI70 58 aa2.27□□□□□ -2.05
CLN3-223ENST00000566472 KRTAP19-7Q3SYF9 63 aa2.26□□□□□ -2.05
CLN3-223ENST00000566472 KRTAP4-8A0A0G2JLE6 195 aa2.24□□□□□ -2.05
CLN3-223ENST00000566472 KRTAP4-8Q9BYQ9 185 aa2.24□□□□□ -2.05
CLN3-223ENST00000566472 KRTAP9-6A0A140TA67 174 aa2.22□□□□□ -2.05
CLN3-223ENST00000566472 KRTAP9-2Q9BYQ4 174 aa2.22□□□□□ -2.05
CLN3-223ENST00000566472 USH2AO75445 5202 aa2.21□□□□□ -2.06
CLN3-223ENST00000566472 INE1O15225 51 aa2.21□□□□□ -2.06
CLN3-223ENST00000566472 MT1EP04732 61 aa2.21□□□□□ -2.06
CLN3-223ENST00000566472 MT1LQ93083 61 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms