RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-218ENST00000566029 FBN3Q75N90 2809 aa1.37□□□□□ -2.19
CHD9-218ENST00000566029 CSMD1Q96PZ7 3565 aa1.37□□□□□ -2.19
CHD9-218ENST00000566029 HYDINQ4G0P3 5121 aa1.36□□□□□ -2.19
CHD9-218ENST00000566029 KRTAP10-4P60372 401 aaPredicted RBP1.36□□□□□ -2.19
CHD9-218ENST00000566029 SPENQ96T58 3664 aaKnown RBP1.35□□□□□ -2.19
CHD9-218ENST00000566029 RELNP78509 3460 aa1.35□□□□□ -2.19
CHD9-218ENST00000566029 LYSTQ99698 3801 aa1.33□□□□□ -2.2
CHD9-218ENST00000566029 LOC400499M0QZD8 3231 aa1.33□□□□□ -2.2
CHD9-218ENST00000566029 CELSR3Q9NYQ7 3312 aa1.33□□□□□ -2.2
CHD9-218ENST00000566029 VPS13CQ709C8 3753 aa1.33□□□□□ -2.2
CHD9-218ENST00000566029 SMG1Q96Q15 3661 aaKnown RBP1.32□□□□□ -2.2
CHD9-218ENST00000566029 PRKDCP78527 4128 aaKnown RBP1.32□□□□□ -2.2
CHD9-218ENST00000566029 ABCA13Q86UQ4 5058 aa1.31□□□□□ -2.2
CHD9-218ENST00000566029 RYR3Q15413 4870 aa1.3□□□□□ -2.2
CHD9-218ENST00000566029 HERC2O95714 4834 aa1.3□□□□□ -2.2
CHD9-218ENST00000566029 FLGP20930 4061 aaPredicted RBP1.29□□□□□ -2.2
CHD9-218ENST00000566029 DNAH1Q9P2D7 4330 aa1.29□□□□□ -2.2
CHD9-218ENST00000566029 KMT2AQ03164 3969 aa1.29□□□□□ -2.2
CHD9-218ENST00000566029 LAMA5O15230 3695 aa1.29□□□□□ -2.2
CHD9-218ENST00000566029 KRTAP10-10P60014 251 aa1.28□□□□□ -2.2
CHD9-218ENST00000566029 CRCT1Q9UGL9 99 aa1.28□□□□□ -2.2
CHD9-218ENST00000566029 KRTAP17-1Q9BYP8 105 aa1.27□□□□□ -2.21
CHD9-218ENST00000566029 RNF213Q63HN8 5207 aa1.27□□□□□ -2.21
CHD9-218ENST00000566029 CSMD2Q7Z408 3487 aa1.26□□□□□ -2.21
CHD9-218ENST00000566029 PLECQ15149 4684 aaKnown RBP1.25□□□□□ -2.21
CHD9-218ENST00000566029 ZNF469Q96JG9 3925 aaPredicted RBP1.25□□□□□ -2.21
CHD9-218ENST00000566029 KIAA1109Q2LD37 5005 aa1.25□□□□□ -2.21
CHD9-218ENST00000566029 EPPK1P58107 5090 aaKnown RBP1.25□□□□□ -2.21
CHD9-218ENST00000566029 KMT2CQ8NEZ4 4911 aaKnown RBP1.24□□□□□ -2.21
CHD9-218ENST00000566029 KRTAP10-12P60413 245 aa1.24□□□□□ -2.21
CHD9-218ENST00000566029 PKHD1P08F94 4074 aa1.23□□□□□ -2.21
CHD9-218ENST00000566029 HMCN2Q8NDA2 5059 aa1.22□□□□□ -2.21
CHD9-218ENST00000566029 HUWE1Q7Z6Z7 4374 aaKnown RBP1.22□□□□□ -2.21
CHD9-218ENST00000566029 VPS13DQ5THJ4 4388 aa1.22□□□□□ -2.21
CHD9-218ENST00000566029 UBR4Q5T4S7 5183 aa1.22□□□□□ -2.21
CHD9-218ENST00000566029 MT1HL1P0DM35 61 aa1.22□□□□□ -2.21
CHD9-218ENST00000566029 LCE4AQ5TA78 99 aa1.21□□□□□ -2.22
CHD9-218ENST00000566029 KRTAP8-1Q8IUC2 63 aa1.21□□□□□ -2.22
CHD9-218ENST00000566029 KRTAP19-2Q3LHN2 52 aa1.2□□□□□ -2.22
CHD9-218ENST00000566029 ANK3Q12955 4377 aaKnown RBP1.2□□□□□ -2.22
CHD9-218ENST00000566029 KRTAP10-5P60370 271 aa1.2□□□□□ -2.22
CHD9-218ENST00000566029 CUBNO60494 3623 aa1.2□□□□□ -2.22
CHD9-218ENST00000566029 HERC1Q15751 4861 aa1.2□□□□□ -2.22
CHD9-218ENST00000566029 KRTAP10-7P60409 375 aaPredicted RBP1.19□□□□□ -2.22
CHD9-218ENST00000566029 LCE3AQ5TA76 89 aa1.19□□□□□ -2.22
CHD9-218ENST00000566029 SPRR2GQ9BYE4 73 aa1.18□□□□□ -2.22
CHD9-218ENST00000566029 FAT4Q6V0I7 4981 aa1.17□□□□□ -2.22
CHD9-218ENST00000566029 KRTAP4-1Q9BYQ7 146 aa1.17□□□□□ -2.22
CHD9-218ENST00000566029 STARD9Q9P2P6 4700 aa1.16□□□□□ -2.22
CHD9-218ENST00000566029 DYNC2H1Q8NCM8 4307 aaKnown RBP1.16□□□□□ -2.22
CHD9-218ENST00000566029 PKHD1L1Q86WI1 4243 aa1.16□□□□□ -2.22
CHD9-218ENST00000566029 DNAH10Q8IVF4 4471 aa1.15□□□□□ -2.23
CHD9-218ENST00000566029 KRTAP12-3P60328 96 aa1.14□□□□□ -2.23
CHD9-218ENST00000566029 DNAH17Q9UFH2 4485 aa1.13□□□□□ -2.23
CHD9-218ENST00000566029 SVEP1Q4LDE5 3571 aa1.13□□□□□ -2.23
CHD9-218ENST00000566029 DYNC1H1Q14204 4646 aaKnown RBP1.13□□□□□ -2.23
CHD9-218ENST00000566029 FAT2Q9NYQ8 4349 aa1.12□□□□□ -2.23
CHD9-218ENST00000566029 KRTAP12-4P60329 112 aa1.12□□□□□ -2.23
CHD9-218ENST00000566029 CSMD3Q7Z407 3707 aa1.11□□□□□ -2.23
CHD9-218ENST00000566029 SACSQ9NZJ4 4579 aa1.11□□□□□ -2.23
CHD9-218ENST00000566029 KRTAP19-1Q8IUB9 90 aa1.11□□□□□ -2.23
CHD9-218ENST00000566029 DNAH5Q8TE73 4624 aa1.11□□□□□ -2.23
CHD9-218ENST00000566029 KRTAP2-3P0C7H8 128 aa1.1□□□□□ -2.23
CHD9-218ENST00000566029 KRTAP2-4Q9BYR9 128 aa1.1□□□□□ -2.23
CHD9-218ENST00000566029 KRTAP2-1Q9BYU5 128 aa1.1□□□□□ -2.23
CHD9-218ENST00000566029 TNXBP22105 4242 aa1.1□□□□□ -2.23
CHD9-218ENST00000566029 DNAH9Q9NYC9 4486 aa1.1□□□□□ -2.23
CHD9-218ENST00000566029 DNAH11Q96DT5 4516 aa1.1□□□□□ -2.23
CHD9-218ENST00000566029 SPRR2BP35325 72 aa1.1□□□□□ -2.23
CHD9-218ENST00000566029 PKD1P98161 4303 aa1.09□□□□□ -2.23
CHD9-218ENST00000566029 LRP1BQ9NZR2 4599 aa1.09□□□□□ -2.23
CHD9-218ENST00000566029 DNAH2Q9P225 4427 aa1.09□□□□□ -2.24
CHD9-218ENST00000566029 USH2AO75445 5202 aa1.08□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP19-8Q3LI54 63 aa1.08□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP9-9Q9BYP9 154 aa1.08□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP9-4Q9BYQ2 154 aa1.08□□□□□ -2.24
CHD9-218ENST00000566029 MT1GP13640 62 aa1.07□□□□□ -2.24
CHD9-218ENST00000566029 SPRR2AP35326 72 aa1.07□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP9-6A0A140TA67 174 aa1.07□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP9-7A8MTY7 169 aa1.07□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP9-6A8MVA2 160 aa1.06□□□□□ -2.24
CHD9-218ENST00000566029 MT2AP02795 61 aa1.06□□□□□ -2.24
CHD9-218ENST00000566029 LCE1AQ5T7P2 110 aa1.06□□□□□ -2.24
CHD9-218ENST00000566029 HSPG2P98160 4391 aa1.06□□□□□ -2.24
CHD9-218ENST00000566029 MUC2Q02817 5179 aa1.06□□□□□ -2.24
CHD9-218ENST00000566029 MT1BP07438 61 aa1.05□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP19-5Q3LI72 72 aa1.05□□□□□ -2.24
CHD9-218ENST00000566029 SSPOA2VEC9 5147 aa1.05□□□□□ -2.24
CHD9-218ENST00000566029 APOBP04114 4563 aaKnown RBP1.05□□□□□ -2.24
CHD9-218ENST00000566029 LCE3CQ5T5A8 94 aa1.05□□□□□ -2.24
CHD9-218ENST00000566029 MT1XP80297 61 aa1.04□□□□□ -2.24
CHD9-218ENST00000566029 MT1FP04733 61 aa1.03□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP2-2Q9BYT5 123 aa1.03□□□□□ -2.24
CHD9-218ENST00000566029 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.02□□□□□ -2.25
CHD9-218ENST00000566029 MYCBP2O75592 4640 aa1.02□□□□□ -2.25
CHD9-218ENST00000566029 DNAH8Q96JB1 4490 aa1.02□□□□□ -2.25
CHD9-218ENST00000566029 FAT1Q14517 4588 aa1.01□□□□□ -2.25
CHD9-218ENST00000566029 FAT3Q8TDW7 4589 aa1□□□□□ -2.25
CHD9-218ENST00000566029 KRTAP9-2Q9BYQ4 174 aa1□□□□□ -2.25
CHD9-218ENST00000566029 MT1EP04732 61 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms