RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TRAV22A0A0B4J277 110 aa6.63□□□□□ -1.35
CLN3-213ENST00000565047 KLKP1Q107X0 134 aa6.62□□□□□ -1.35
CLN3-213ENST00000565047 ATP5EP2Q5VTU8 51 aa6.62□□□□□ -1.35
CLN3-213ENST00000565047 LOC101927531A0A1B0GV80 90 aa6.61□□□□□ -1.35
CLN3-213ENST00000565047 Q5VV11 94 aa6.61□□□□□ -1.35
CLN3-213ENST00000565047 MUC12Q9UKN1 5478 aa6.6□□□□□ -1.35
CLN3-213ENST00000565047 HIST1H4AP62805 103 aaKnown RBP6.58□□□□□ -1.36
CLN3-213ENST00000565047 A6NN06 94 aa6.57□□□□□ -1.36
CLN3-213ENST00000565047 KRTAP10-5P60370 271 aa6.56□□□□□ -1.36
CLN3-213ENST00000565047 UQCRQO14949 82 aa6.55□□□□□ -1.36
CLN3-213ENST00000565047 MT-ATP8P03928 68 aa6.55□□□□□ -1.36
CLN3-213ENST00000565047 H0Y9P7 68 aa6.51□□□□□ -1.37
CLN3-213ENST00000565047 CRIPTQ9P021 101 aa6.51□□□□□ -1.37
CLN3-213ENST00000565047 ATOX1O00244 68 aa6.5□□□□□ -1.37
CLN3-213ENST00000565047 H0YAA0 97 aa6.49□□□□□ -1.37
CLN3-213ENST00000565047 IMUPQ9GZP8 106 aa6.47□□□□□ -1.37
CLN3-213ENST00000565047 NDUFC1O43677 76 aa6.44□□□□□ -1.38
CLN3-213ENST00000565047 A8MUN3 132 aa6.43□□□□□ -1.38
CLN3-213ENST00000565047 OCR1Q9BZK8 76 aa6.43□□□□□ -1.38
CLN3-213ENST00000565047 LINC00208Q96KT6 92 aa6.41□□□□□ -1.38
CLN3-213ENST00000565047 KMT2DO14686 5537 aa6.41□□□□□ -1.38
CLN3-213ENST00000565047 MDN1Q9NU22 5596 aa6.41□□□□□ -1.38
CLN3-213ENST00000565047 KRTAP5-9P26371 169 aa6.39□□□□□ -1.39
CLN3-213ENST00000565047 SCGB1A1P11684 91 aa6.36□□□□□ -1.39
CLN3-213ENST00000565047 ADM2Q7Z4H4 148 aa6.36□□□□□ -1.39
CLN3-213ENST00000565047 MP68P56378 58 aa6.32□□□□□ -1.4
CLN3-213ENST00000565047 MT1XP80297 61 aa6.28□□□□□ -1.4
CLN3-213ENST00000565047 H3BPC8 53 aa6.27□□□□□ -1.41
CLN3-213ENST00000565047 KRTAP20-1Q3LI63 56 aa6.27□□□□□ -1.41
CLN3-213ENST00000565047 P0C880 135 aa6.26□□□□□ -1.41
CLN3-213ENST00000565047 TRAV7A0A075B6U4 112 aa6.25□□□□□ -1.41
CLN3-213ENST00000565047 DMAC1Q96GE9 116 aa6.25□□□□□ -1.41
CLN3-213ENST00000565047 KRTAP3-2Q9BYR7 98 aa6.25□□□□□ -1.41
CLN3-213ENST00000565047 SMIM20Q8N5G0 67 aa6.24□□□□□ -1.41
CLN3-213ENST00000565047 SERP2Q8N6R1 65 aa6.19□□□□□ -1.42
CLN3-213ENST00000565047 PRO2289Q9P1D8 64 aa6.18□□□□□ -1.42
CLN3-213ENST00000565047 R4GN34 69 aa6.17□□□□□ -1.42
CLN3-213ENST00000565047 PLAC4Q8WY50 150 aa6.16□□□□□ -1.42
CLN3-213ENST00000565047 KRTAP12-2P59991 146 aa6.14□□□□□ -1.43
CLN3-213ENST00000565047 C20orf197Q8N268 126 aa6.14□□□□□ -1.43
CLN3-213ENST00000565047 SNURFQ9Y675 71 aa6.13□□□□□ -1.43
CLN3-213ENST00000565047 M0QZ58 72 aa6.12□□□□□ -1.43
CLN3-213ENST00000565047 COX7CP15954 63 aa6.12□□□□□ -1.43
CLN3-213ENST00000565047 ANAPC13Q9BS18 74 aa6.11□□□□□ -1.43
CLN3-213ENST00000565047 SPRR2FQ96RM1 72 aa6.09□□□□□ -1.43
CLN3-213ENST00000565047 ACYP2P14621 99 aa6.04□□□□□ -1.44
CLN3-213ENST00000565047 KRTAP8-1Q8IUC2 63 aa6.04□□□□□ -1.44
CLN3-213ENST00000565047 KRTAP4-8A0A0G2JLE6 195 aa6.03□□□□□ -1.44
CLN3-213ENST00000565047 KRTAP4-8Q9BYQ9 185 aa6.03□□□□□ -1.44
CLN3-213ENST00000565047 CCDC179H3BU77 68 aa6.02□□□□□ -1.45
CLN3-213ENST00000565047 KRTAP2-3P0C7H8 128 aa6.02□□□□□ -1.45
CLN3-213ENST00000565047 SPRR2EP22531 72 aa6.02□□□□□ -1.45
CLN3-213ENST00000565047 SPRR2BP35325 72 aa6.02□□□□□ -1.45
CLN3-213ENST00000565047 SPRR2AP35326 72 aa6.02□□□□□ -1.45
CLN3-213ENST00000565047 KRTAP2-4Q9BYR9 128 aa6.02□□□□□ -1.45
CLN3-213ENST00000565047 CYSTM1Q9H1C7 97 aa6.02□□□□□ -1.45
CLN3-213ENST00000565047 LINC01554Q52M75 96 aa6.01□□□□□ -1.45
CLN3-213ENST00000565047 LCE1AQ5T7P2 110 aa6□□□□□ -1.45
CLN3-213ENST00000565047 KRTAP10-7P60409 375 aaPredicted RBP5.99□□□□□ -1.45
CLN3-213ENST00000565047 KRTAP10-12P60413 245 aa5.97□□□□□ -1.45
CLN3-213ENST00000565047 H7BZZ5 65 aa5.94□□□□□ -1.46
CLN3-213ENST00000565047 SPANXA2-OT1Q8N9U9 137 aa5.93□□□□□ -1.46
CLN3-213ENST00000565047 SPTSSBQ8NFR3 76 aa5.92□□□□□ -1.46
CLN3-213ENST00000565047 CHKB-CPT1BH3BT56 60 aa5.86□□□□□ -1.47
CLN3-213ENST00000565047 KRTAP13-4Q3LI77 160 aa5.85□□□□□ -1.47
CLN3-213ENST00000565047 KRTAP2-2Q9BYT5 123 aa5.82□□□□□ -1.48
CLN3-213ENST00000565047 KRTAP2-1Q9BYU5 128 aa5.82□□□□□ -1.48
CLN3-213ENST00000565047 SPRR2DP22532 72 aa5.81□□□□□ -1.48
CLN3-213ENST00000565047 PCP4P48539 62 aa5.8□□□□□ -1.48
CLN3-213ENST00000565047 COA5Q86WW8 74 aa5.78□□□□□ -1.48
CLN3-213ENST00000565047 TMEM258P61165 79 aa5.74□□□□□ -1.49
CLN3-213ENST00000565047 ATP5EP56381 51 aaPredicted RBP5.72□□□□□ -1.49
CLN3-213ENST00000565047 LCE3BQ5TA77 95 aa5.68□□□□□ -1.5
CLN3-213ENST00000565047 KRTAP19-7Q3SYF9 63 aa5.64□□□□□ -1.51
CLN3-213ENST00000565047 DSTQ03001 7570 aaKnown RBP5.63□□□□□ -1.51
CLN3-213ENST00000565047 CAMK2N1Q7Z7J9 78 aa5.63□□□□□ -1.51
CLN3-213ENST00000565047 SERP1Q9Y6X1 66 aa5.58□□□□□ -1.52
CLN3-213ENST00000565047 LCE5AQ5TCM9 118 aa5.57□□□□□ -1.52
CLN3-213ENST00000565047 SPATA8Q6RVD6 105 aa5.57□□□□□ -1.52
CLN3-213ENST00000565047 MT1EP04732 61 aa5.56□□□□□ -1.52
CLN3-213ENST00000565047 A0A0D9SG42 100 aa5.54□□□□□ -1.52
CLN3-213ENST00000565047 SEC61GP60059 68 aa5.53□□□□□ -1.52
CLN3-213ENST00000565047 A0A1B0GU33 70 aa5.52□□□□□ -1.53
CLN3-213ENST00000565047 KRTAP12-1P59990 96 aa5.52□□□□□ -1.53
CLN3-213ENST00000565047 KRTAP19-3Q7Z4W3 81 aa5.51□□□□□ -1.53
CLN3-213ENST00000565047 GPR98Q8WXG9 6306 aa5.46□□□□□ -1.54
CLN3-213ENST00000565047 A0A1B0GU69 56 aa5.46□□□□□ -1.54
CLN3-213ENST00000565047 SPINT4Q6UDR6 99 aa5.46□□□□□ -1.54
CLN3-213ENST00000565047 LINC01558Q9Y6Z2 57 aa5.46□□□□□ -1.54
CLN3-213ENST00000565047 KRTAP19-5Q3LI72 72 aa5.43□□□□□ -1.54
CLN3-213ENST00000565047 RPS28P62857 69 aaKnown RBP5.41□□□□□ -1.54
CLN3-213ENST00000565047 SMIM26A0A096LP01 95 aa5.39□□□□□ -1.55
CLN3-213ENST00000565047 MT1GP13640 62 aa5.37□□□□□ -1.55
CLN3-213ENST00000565047 PRR15LQ9BU68 103 aa5.37□□□□□ -1.55
CLN3-213ENST00000565047 A8MU10 97 aa5.35□□□□□ -1.55
CLN3-213ENST00000565047 Q1T7F1 81 aa5.35□□□□□ -1.55
CLN3-213ENST00000565047 V9GYY9 64 aa5.33□□□□□ -1.56
CLN3-213ENST00000565047 PSPHP1O15172 72 aa5.31□□□□□ -1.56
CLN3-213ENST00000565047 KRTAP4-9Q9BYQ8 210 aa5.31□□□□□ -1.56
CLN3-213ENST00000565047 MT1LQ93083 61 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms