RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 AKAP6Q13023 2319 aa2.42□□□□□ -2.02
VPS35-205ENST00000563984 SONP18583 2426 aaKnown RBP2.41□□□□□ -2.02
VPS35-205ENST00000563984 RHPN1-AS1Q9BWJ2 59 aa2.41□□□□□ -2.02
VPS35-205ENST00000563984 VPS13CQ709C8 3753 aa2.41□□□□□ -2.02
VPS35-205ENST00000563984 MEGF8Q7Z7M0 2845 aa2.41□□□□□ -2.02
VPS35-205ENST00000563984 SPRR1BP22528 89 aa2.4□□□□□ -2.03
VPS35-205ENST00000563984 DEFB1P60022 68 aa2.4□□□□□ -2.03
VPS35-205ENST00000563984 APLNQ9ULZ1 77 aa2.4□□□□□ -2.03
VPS35-205ENST00000563984 PCLOQ9Y6V0 5065 aa2.39□□□□□ -2.03
VPS35-205ENST00000563984 MGAM2Q2M2H8 2515 aa2.38□□□□□ -2.03
VPS35-205ENST00000563984 KRTAP10-10P60014 251 aa2.38□□□□□ -2.03
VPS35-205ENST00000563984 DEFB108BQ8NET1 73 aa2.38□□□□□ -2.03
VPS35-205ENST00000563984 H3BUX3 64 aa2.36□□□□□ -2.03
VPS35-205ENST00000563984 SPINK1P00995 79 aa2.36□□□□□ -2.03
VPS35-205ENST00000563984 HTN1P15515 57 aa2.36□□□□□ -2.03
VPS35-205ENST00000563984 WNK1Q9H4A3 2382 aa2.36□□□□□ -2.03
VPS35-205ENST00000563984 SPRR5A0A1B0GTR4 108 aa2.35□□□□□ -2.03
VPS35-205ENST00000563984 S4R3F8 94 aa2.35□□□□□ -2.03
VPS35-205ENST00000563984 ZANQ9Y493 2812 aa2.34□□□□□ -2.03
VPS35-205ENST00000563984 RYR3Q15413 4870 aa2.34□□□□□ -2.03
VPS35-205ENST00000563984 FLG2Q5D862 2391 aaPredicted RBP2.34□□□□□ -2.03
VPS35-205ENST00000563984 NOP10Q9NPE3 64 aaKnown RBP2.34□□□□□ -2.03
VPS35-205ENST00000563984 UBR4Q5T4S7 5183 aa2.34□□□□□ -2.04
VPS35-205ENST00000563984 TENM1Q9UKZ4 2725 aa2.33□□□□□ -2.04
VPS35-205ENST00000563984 PRO0255Q9UI72 69 aa2.33□□□□□ -2.04
VPS35-205ENST00000563984 SVEP1Q4LDE5 3571 aa2.33□□□□□ -2.04
VPS35-205ENST00000563984 KMT2CQ8NEZ4 4911 aaKnown RBP2.32□□□□□ -2.04
VPS35-205ENST00000563984 BIRC6Q9NR09 4857 aa2.32□□□□□ -2.04
VPS35-205ENST00000563984 WNK2Q9Y3S1 2297 aa2.31□□□□□ -2.04
VPS35-205ENST00000563984 ANK2Q01484 3957 aa2.3□□□□□ -2.04
VPS35-205ENST00000563984 HRNRQ86YZ3 2850 aaPredicted RBP2.29□□□□□ -2.04
VPS35-205ENST00000563984 KRTAP21-2Q3LI59 83 aa2.29□□□□□ -2.04
VPS35-205ENST00000563984 Q5VSD8 79 aa2.29□□□□□ -2.04
VPS35-205ENST00000563984 EPPK1P58107 5090 aaKnown RBP2.29□□□□□ -2.04
VPS35-205ENST00000563984 VWFP04275 2813 aa2.28□□□□□ -2.04
VPS35-205ENST00000563984 HYDINQ4G0P3 5121 aa2.28□□□□□ -2.04
VPS35-205ENST00000563984 KRTAP13-4Q3LI77 160 aa2.28□□□□□ -2.04
VPS35-205ENST00000563984 ANK3Q12955 4377 aaKnown RBP2.27□□□□□ -2.05
VPS35-205ENST00000563984 TRRAPQ9Y4A5 3859 aa2.25□□□□□ -2.05
VPS35-205ENST00000563984 ROS1P08922 2347 aa2.24□□□□□ -2.05
VPS35-205ENST00000563984 HMCN1Q96RW7 5635 aa2.24□□□□□ -2.05
VPS35-205ENST00000563984 TENM3Q9P273 2699 aa2.24□□□□□ -2.05
VPS35-205ENST00000563984 A0A0D9SG42 100 aa2.23□□□□□ -2.05
VPS35-205ENST00000563984 PRKDCP78527 4128 aaKnown RBP2.22□□□□□ -2.05
VPS35-205ENST00000563984 TENM2Q9NT68 2774 aa2.21□□□□□ -2.05
VPS35-205ENST00000563984 DEFB136Q30KP8 78 aa2.21□□□□□ -2.06
VPS35-205ENST00000563984 RYR1P21817 5038 aa2.19□□□□□ -2.06
VPS35-205ENST00000563984 KRTAP12-1P59990 96 aa2.19□□□□□ -2.06
VPS35-205ENST00000563984 RYR2Q92736 4967 aa2.18□□□□□ -2.06
VPS35-205ENST00000563984 COL7A1Q02388 2944 aa2.17□□□□□ -2.06
VPS35-205ENST00000563984 STAB2Q8WWQ8 2551 aa2.17□□□□□ -2.06
VPS35-205ENST00000563984 M0QZ58 72 aa2.14□□□□□ -2.07
VPS35-205ENST00000563984 HERC2O95714 4834 aa2.14□□□□□ -2.07
VPS35-205ENST00000563984 A0A096LNI7 61 aa2.12□□□□□ -2.07
VPS35-205ENST00000563984 SPINK6Q6UWN8 80 aa2.12□□□□□ -2.07
VPS35-205ENST00000563984 CMYA5Q8N3K9 4069 aa2.12□□□□□ -2.07
VPS35-205ENST00000563984 CSMD3Q7Z407 3707 aa2.11□□□□□ -2.07
VPS35-205ENST00000563984 KIAA1109Q2LD37 5005 aa2.11□□□□□ -2.07
VPS35-205ENST00000563984 A0A096LPF7 62 aa2.08□□□□□ -2.08
VPS35-205ENST00000563984 DNAH1Q9P2D7 4330 aa2.08□□□□□ -2.08
VPS35-205ENST00000563984 SACSQ9NZJ4 4579 aa2.07□□□□□ -2.08
VPS35-205ENST00000563984 DYNC2H1Q8NCM8 4307 aaKnown RBP2.06□□□□□ -2.08
VPS35-205ENST00000563984 ABCA13Q86UQ4 5058 aa2.06□□□□□ -2.08
VPS35-205ENST00000563984 KRTAP13-1Q8IUC0 172 aa2.05□□□□□ -2.08
VPS35-205ENST00000563984 H3BNG1 76 aa2.04□□□□□ -2.08
VPS35-205ENST00000563984 DNAH9Q9NYC9 4486 aa2.04□□□□□ -2.08
VPS35-205ENST00000563984 HERC1Q15751 4861 aa2.03□□□□□ -2.08
VPS35-205ENST00000563984 LYSTQ99698 3801 aa2.03□□□□□ -2.08
VPS35-205ENST00000563984 FRAS1Q86XX4 4008 aa2.01□□□□□ -2.09
VPS35-205ENST00000563984 LINC01556Q5JQF7 62 aa2.01□□□□□ -2.09
VPS35-205ENST00000563984 SRRM2Q9UQ35 2752 aaKnown RBP1.99□□□□□ -2.09
VPS35-205ENST00000563984 MUC2Q02817 5179 aa1.99□□□□□ -2.09
VPS35-205ENST00000563984 HECTD4Q9Y4D8 3996 aa1.98□□□□□ -2.09
VPS35-205ENST00000563984 STARD9Q9P2P6 4700 aa1.97□□□□□ -2.09
VPS35-205ENST00000563984 DMBT1Q9UGM3 2413 aaPredicted RBP1.97□□□□□ -2.09
VPS35-205ENST00000563984 DNAH3Q8TD57 4116 aa1.97□□□□□ -2.09
VPS35-205ENST00000563984 SPART-AS1P0CW21 52 aa1.96□□□□□ -2.1
VPS35-205ENST00000563984 DNAH7Q8WXX0 4024 aa1.96□□□□□ -2.1
VPS35-205ENST00000563984 PLECQ15149 4684 aaKnown RBP1.94□□□□□ -2.1
VPS35-205ENST00000563984 HUWE1Q7Z6Z7 4374 aaKnown RBP1.94□□□□□ -2.1
VPS35-205ENST00000563984 TNP1P09430 55 aa1.92□□□□□ -2.1
VPS35-205ENST00000563984 KMT2AQ03164 3969 aa1.91□□□□□ -2.1
VPS35-205ENST00000563984 RNF213Q63HN8 5207 aa1.91□□□□□ -2.1
VPS35-205ENST00000563984 KRTAP4-1Q9BYQ7 146 aa1.91□□□□□ -2.1
VPS35-205ENST00000563984 DNAH10Q8IVF4 4471 aa1.91□□□□□ -2.1
VPS35-205ENST00000563984 KRTAP6-3Q3LI67 103 aa1.9□□□□□ -2.11
VPS35-205ENST00000563984 CRCT1Q9UGL9 99 aa1.9□□□□□ -2.11
VPS35-205ENST00000563984 SMR3BP02814 79 aaPredicted RBP1.88□□□□□ -2.11
VPS35-205ENST00000563984 HTN3P15516 51 aa1.88□□□□□ -2.11
VPS35-205ENST00000563984 KRTAP12-4P60329 112 aa1.87□□□□□ -2.11
VPS35-205ENST00000563984 VPS13DQ5THJ4 4388 aa1.86□□□□□ -2.11
VPS35-205ENST00000563984 DEFB135Q30KP9 77 aa1.86□□□□□ -2.11
VPS35-205ENST00000563984 HSPG2P98160 4391 aa1.86□□□□□ -2.11
VPS35-205ENST00000563984 PKHD1P08F94 4074 aa1.86□□□□□ -2.11
VPS35-205ENST00000563984 DNAH11Q96DT5 4516 aa1.85□□□□□ -2.11
VPS35-205ENST00000563984 FAT4Q6V0I7 4981 aa1.85□□□□□ -2.11
VPS35-205ENST00000563984 PKD1P98161 4303 aa1.84□□□□□ -2.11
VPS35-205ENST00000563984 APOBP04114 4563 aaKnown RBP1.84□□□□□ -2.11
VPS35-205ENST00000563984 DYNC1H1Q14204 4646 aaKnown RBP1.84□□□□□ -2.12
VPS35-205ENST00000563984 HMCN2Q8NDA2 5059 aa1.84□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms