RNA–Protein interactions for RNA: ENST00000563645.1

GDE1-202, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 2

Gene GDE1, Length 769 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-202ENST00000563645 RIF1Q5UIP0 2472 aaKnown RBP1.27□□□□□ -2.21
GDE1-202ENST00000563645 USP34Q70CQ2 3546 aa1.27□□□□□ -2.21
GDE1-202ENST00000563645 HECTD4Q9Y4D8 3996 aa1.26□□□□□ -2.21
GDE1-202ENST00000563645 DNAH6Q9C0G6 4158 aa1.26□□□□□ -2.21
GDE1-202ENST00000563645 FREM2Q5SZK8 3169 aa1.26□□□□□ -2.21
GDE1-202ENST00000563645 DMXL2Q8TDJ6 3036 aa1.26□□□□□ -2.21
GDE1-202ENST00000563645 CSMD3Q7Z407 3707 aa1.26□□□□□ -2.21
GDE1-202ENST00000563645 FLGP20930 4061 aaPredicted RBP1.25□□□□□ -2.21
GDE1-202ENST00000563645 ANKHD1Q8IWZ3 2542 aaKnown RBP1.25□□□□□ -2.21
GDE1-202ENST00000563645 PKHD1L1Q86WI1 4243 aa1.24□□□□□ -2.21
GDE1-202ENST00000563645 KRTAP2-3P0C7H8 128 aa1.24□□□□□ -2.21
GDE1-202ENST00000563645 KRTAP2-4Q9BYR9 128 aa1.24□□□□□ -2.21
GDE1-202ENST00000563645 KRTAP2-1Q9BYU5 128 aa1.24□□□□□ -2.21
GDE1-202ENST00000563645 PIEZO1Q92508 2521 aa1.24□□□□□ -2.21
GDE1-202ENST00000563645 C9orf92A6NGG3 77 aa1.22□□□□□ -2.21
GDE1-202ENST00000563645 XIRP2A4UGR9 3374 aa1.22□□□□□ -2.21
GDE1-202ENST00000563645 SMG1Q96Q15 3661 aaKnown RBP1.21□□□□□ -2.22
GDE1-202ENST00000563645 APCP25054 2843 aa1.21□□□□□ -2.22
GDE1-202ENST00000563645 LOC400499M0QZD8 3231 aa1.21□□□□□ -2.22
GDE1-202ENST00000563645 PDZD2O15018 2839 aa1.21□□□□□ -2.22
GDE1-202ENST00000563645 DNAH14Q0VDD8 3507 aa1.2□□□□□ -2.22
GDE1-202ENST00000563645 DOPEY1Q5JWR5 2465 aa1.2□□□□□ -2.22
GDE1-202ENST00000563645 LRRK2Q5S007 2527 aa1.2□□□□□ -2.22
GDE1-202ENST00000563645 ZNF292O60281 2723 aa1.19□□□□□ -2.22
GDE1-202ENST00000563645 KRTAP8-1Q8IUC2 63 aa1.19□□□□□ -2.22
GDE1-202ENST00000563645 ITPR3Q14573 2671 aa1.19□□□□□ -2.22
GDE1-202ENST00000563645 TEX15Q9BXT5 2789 aa1.19□□□□□ -2.22
GDE1-202ENST00000563645 HECTD1Q9ULT8 2610 aa1.19□□□□□ -2.22
GDE1-202ENST00000563645 LAMA3Q16787 3333 aa1.18□□□□□ -2.22
GDE1-202ENST00000563645 TGP01266 2768 aa1.18□□□□□ -2.22
GDE1-202ENST00000563645 KRTAP10-4P60372 401 aaPredicted RBP1.18□□□□□ -2.22
GDE1-202ENST00000563645 TENM1Q9UKZ4 2725 aa1.18□□□□□ -2.22
GDE1-202ENST00000563645 TACC2O95359 2948 aa1.18□□□□□ -2.22
GDE1-202ENST00000563645 SPTAN1Q13813 2472 aaKnown RBP1.17□□□□□ -2.22
GDE1-202ENST00000563645 DYNC1H1Q14204 4646 aaKnown RBP1.17□□□□□ -2.22
GDE1-202ENST00000563645 NIPBLQ6KC79 2804 aaeCLIP1.17□□□□□ -2.22
GDE1-202ENST00000563645 FAT2Q9NYQ8 4349 aa1.17□□□□□ -2.22
GDE1-202ENST00000563645 M0R2T5 61 aa1.17□□□□□ -2.22
GDE1-202ENST00000563645 VCANP13611 3396 aa1.17□□□□□ -2.22
GDE1-202ENST00000563645 LRP1Q07954 4544 aaKnown RBP1.17□□□□□ -2.22
GDE1-202ENST00000563645 ACANP16112 2415 aa1.16□□□□□ -2.22
GDE1-202ENST00000563645 EPG5Q9HCE0 2579 aa1.16□□□□□ -2.22
GDE1-202ENST00000563645 SETXQ7Z333 2677 aaKnown RBP1.16□□□□□ -2.22
GDE1-202ENST00000563645 TENM4Q6N022 2769 aa1.16□□□□□ -2.22
GDE1-202ENST00000563645 WDFY3Q8IZQ1 3526 aa1.16□□□□□ -2.22
GDE1-202ENST00000563645 USP9XQ93008 2570 aaPredicted RBP1.15□□□□□ -2.22
GDE1-202ENST00000563645 UTP20O75691 2785 aaKnown RBP1.15□□□□□ -2.22
GDE1-202ENST00000563645 CENPEQ02224 2701 aa1.15□□□□□ -2.23
GDE1-202ENST00000563645 KRTAP21-3Q3LHN1 58 aa1.15□□□□□ -2.23
GDE1-202ENST00000563645 USP9YO00507 2555 aaPredicted RBP1.15□□□□□ -2.23
GDE1-202ENST00000563645 ZANQ9Y493 2812 aa1.15□□□□□ -2.23
GDE1-202ENST00000563645 HELZ2Q9BYK8 2649 aaKnown RBP1.15□□□□□ -2.23
GDE1-202ENST00000563645 TLN1Q9Y490 2541 aaKnown RBP1.14□□□□□ -2.23
GDE1-202ENST00000563645 ADGRG4Q8IZF6 3080 aa1.14□□□□□ -2.23
GDE1-202ENST00000563645 PKHD1P08F94 4074 aa1.14□□□□□ -2.23
GDE1-202ENST00000563645 CHD8Q9HCK8 2581 aa1.14□□□□□ -2.23
GDE1-202ENST00000563645 FBN2P35556 2912 aa1.14□□□□□ -2.23
GDE1-202ENST00000563645 FAT1Q14517 4588 aa1.14□□□□□ -2.23
GDE1-202ENST00000563645 CACNA1AO00555 2505 aa1.13□□□□□ -2.23
GDE1-202ENST00000563645 ASPMQ8IZT6 3477 aa1.13□□□□□ -2.23
GDE1-202ENST00000563645 CFAP46Q8IYW2 2715 aa1.13□□□□□ -2.23
GDE1-202ENST00000563645 STAB2Q8WWQ8 2551 aa1.12□□□□□ -2.23
GDE1-202ENST00000563645 CSMD2Q7Z408 3487 aa1.12□□□□□ -2.23
GDE1-202ENST00000563645 HERC1Q15751 4861 aa1.12□□□□□ -2.23
GDE1-202ENST00000563645 BRCA2P51587 3418 aa1.11□□□□□ -2.23
GDE1-202ENST00000563645 USP24Q9UPU5 2620 aa1.11□□□□□ -2.23
GDE1-202ENST00000563645 MUC3AQ02505 3323 aa1.11□□□□□ -2.23
GDE1-202ENST00000563645 MYO9AB2RTY4 2548 aa1.11□□□□□ -2.23
GDE1-202ENST00000563645 TNXBP22105 4242 aa1.11□□□□□ -2.23
GDE1-202ENST00000563645 SMR3BP02814 79 aaPredicted RBP1.11□□□□□ -2.23
GDE1-202ENST00000563645 SVEP1Q4LDE5 3571 aa1.11□□□□□ -2.23
GDE1-202ENST00000563645 STAB1Q9NY15 2570 aa1.1□□□□□ -2.23
GDE1-202ENST00000563645 MTORP42345 2549 aa1.1□□□□□ -2.23
GDE1-202ENST00000563645 UNC79Q9P2D8 2635 aa1.1□□□□□ -2.23
GDE1-202ENST00000563645 VPS13CQ709C8 3753 aa1.09□□□□□ -2.23
GDE1-202ENST00000563645 MUC17Q685J3 4493 aa1.09□□□□□ -2.23
GDE1-202ENST00000563645 TLN2Q9Y4G6 2542 aa1.09□□□□□ -2.23
GDE1-202ENST00000563645 ZFYVE26Q68DK2 2539 aa1.09□□□□□ -2.24
GDE1-202ENST00000563645 ATRQ13535 2644 aa1.08□□□□□ -2.24
GDE1-202ENST00000563645 ITPR2Q14571 2701 aa1.08□□□□□ -2.24
GDE1-202ENST00000563645 NOTCH1P46531 2555 aa1.07□□□□□ -2.24
GDE1-202ENST00000563645 EYSQ5T1H1 3165 aa1.07□□□□□ -2.24
GDE1-202ENST00000563645 PKD1L1Q8TDX9 2849 aa1.07□□□□□ -2.24
GDE1-202ENST00000563645 MXRA5Q9NR99 2828 aa1.07□□□□□ -2.24
GDE1-202ENST00000563645 TEP1Q99973 2627 aaKnown RBP1.07□□□□□ -2.24
GDE1-202ENST00000563645 LPAP08519 4548 aa1.07□□□□□ -2.24
GDE1-202ENST00000563645 HRNRQ86YZ3 2850 aaPredicted RBP1.06□□□□□ -2.24
GDE1-202ENST00000563645 BDP1A6H8Y1 2624 aa1.06□□□□□ -2.24
GDE1-202ENST00000563645 FLNCQ14315 2725 aa1.06□□□□□ -2.24
GDE1-202ENST00000563645 NBEAL2Q6ZNJ1 2754 aa1.06□□□□□ -2.24
GDE1-202ENST00000563645 POLQO75417 2590 aa1.06□□□□□ -2.24
GDE1-202ENST00000563645 STARD9Q9P2P6 4700 aa1.06□□□□□ -2.24
GDE1-202ENST00000563645 MYO15AQ9UKN7 3530 aa1.05□□□□□ -2.24
GDE1-202ENST00000563645 CDH23Q9H251 3354 aa1.05□□□□□ -2.24
GDE1-202ENST00000563645 PRM1P04553 51 aa1.05□□□□□ -2.24
GDE1-202ENST00000563645 CUBNO60494 3623 aa1.05□□□□□ -2.24
GDE1-202ENST00000563645 NBEAL1Q6ZS30 2694 aa1.04□□□□□ -2.24
GDE1-202ENST00000563645 GCN1Q92616 2671 aaKnown RBP1.04□□□□□ -2.24
GDE1-202ENST00000563645 HIVEP1P15822 2718 aa1.04□□□□□ -2.24
GDE1-202ENST00000563645 KRTAP19-5Q3LI72 72 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms