RNA–Protein interactions for RNA: ENST00000563645.1

GDE1-202, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 2

Gene GDE1, Length 769 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-202ENST00000563645 AEBP2Q6ZN18 517 aaPredicted RBP22.58■■□□□ 1.21
GDE1-202ENST00000563645 CHIC1Q5VXU3 224 aa21.9■■□□□ 1.1
GDE1-202ENST00000563645 PHF23Q9BUL5 403 aaPredicted RBP19.22■□□□□ 0.67
GDE1-202ENST00000563645 SENP3Q9H4L4 574 aaPredicted RBP19.22■□□□□ 0.67
GDE1-202ENST00000563645 FOXD1Q16676 465 aa17.83■□□□□ 0.44
GDE1-202ENST00000563645 PLPPR3Q6T4P5 718 aa17.71■□□□□ 0.43
GDE1-202ENST00000563645 PPP6R1Q9UPN7 881 aa17■□□□□ 0.31
GDE1-202ENST00000563645 ADRA2BP18089 450 aa16.98■□□□□ 0.31
GDE1-202ENST00000563645 PIAS4Q8N2W9 510 aaPredicted RBP16.79■□□□□ 0.28
GDE1-202ENST00000563645 MSH5O43196 834 aa16.54■□□□□ 0.24
GDE1-202ENST00000563645 PPP4R3CPQ6ZMV5 832 aa15.57■□□□□ 0.08
GDE1-202ENST00000563645 SCAF1Q9H7N4 1312 aaKnown RBP15.56■□□□□ 0.08
GDE1-202ENST00000563645 MAPK8IP2Q13387 824 aaPredicted RBP15.44■□□□□ 0.06
GDE1-202ENST00000563645 POTEDQ86YR6 584 aa15.34■□□□□ 0.05
GDE1-202ENST00000563645 DMRT2Q9Y5R5 561 aa15.31■□□□□ 0.04
GDE1-202ENST00000563645 CNKSR2Q8WXI2 1034 aa15.18■□□□□ 0.02
GDE1-202ENST00000563645 NCBP3Q53F19 620 aaKnown RBP15.13■□□□□ 0.01
GDE1-202ENST00000563645 KCNA4P22459 653 aa15.02■□□□□ -0
GDE1-202ENST00000563645 RNF216Q9NWF9 866 aaPredicted RBP14.93□□□□□ -0.02
GDE1-202ENST00000563645 HOXD11P31277 338 aaPredicted RBP14.92□□□□□ -0.02
GDE1-202ENST00000563645 NPM3O75607 178 aaKnown RBP14.89□□□□□ -0.03
GDE1-202ENST00000563645 DCAF8L1A6NGE4 600 aa14.63□□□□□ -0.07
GDE1-202ENST00000563645 DNAJC5BQ9UF47 199 aa14.52□□□□□ -0.09
GDE1-202ENST00000563645 SLC4A1APQ9BWU0 796 aaKnown RBP14.28□□□□□ -0.12
GDE1-202ENST00000563645 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.21□□□□□ -0.13
GDE1-202ENST00000563645 RNF39Q9H2S5 420 aa14.14□□□□□ -0.15
GDE1-202ENST00000563645 SLC4A2P04920 1241 aa14.11□□□□□ -0.15
GDE1-202ENST00000563645 U3KPZ7 1027 aaPredicted RBP13.97□□□□□ -0.17
GDE1-202ENST00000563645 C1QBPQ07021 282 aaKnown RBP13.96□□□□□ -0.17
GDE1-202ENST00000563645 FOXD4L1Q9NU39 408 aa13.89□□□□□ -0.19
GDE1-202ENST00000563645 CACNB1Q02641 598 aaPredicted RBP13.88□□□□□ -0.19
GDE1-202ENST00000563645 ZBTB22O15209 634 aa13.81□□□□□ -0.2
GDE1-202ENST00000563645 MYCNP04198 464 aaPredicted RBP13.79□□□□□ -0.2
GDE1-202ENST00000563645 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.75□□□□□ -0.21
GDE1-202ENST00000563645 HNRNPUL2Q1KMD3 747 aaKnown RBP13.75□□□□□ -0.21
GDE1-202ENST00000563645 SAMD1Q6SPF0 538 aaPredicted RBP13.69□□□□□ -0.22
GDE1-202ENST00000563645 EHMT2Q96KQ7 1210 aa13.66□□□□□ -0.22
GDE1-202ENST00000563645 APLP2Q06481 763 aa13.65□□□□□ -0.22
GDE1-202ENST00000563645 SPINK5Q9NQ38 1064 aaPredicted RBP13.61□□□□□ -0.23
GDE1-202ENST00000563645 CAPN15O75808 1086 aa13.58□□□□□ -0.24
GDE1-202ENST00000563645 CSRNP3Q8WYN3 585 aa13.58□□□□□ -0.24
GDE1-202ENST00000563645 ZNF219Q9P2Y4 722 aaPredicted RBP13.49□□□□□ -0.25
GDE1-202ENST00000563645 TRHP20396 242 aaPredicted RBP13.46□□□□□ -0.25
GDE1-202ENST00000563645 ATXN8OSP0DMR3 200 aa13.42□□□□□ -0.26
GDE1-202ENST00000563645 DSG3P32926 999 aa13.39□□□□□ -0.27
GDE1-202ENST00000563645 ATF5Q9Y2D1 282 aaPredicted RBP13.39□□□□□ -0.27
GDE1-202ENST00000563645 ABCB7O75027 752 aa13.3□□□□□ -0.28
GDE1-202ENST00000563645 POLA2Q14181 598 aa13.2□□□□□ -0.3
GDE1-202ENST00000563645 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.33
GDE1-202ENST00000563645 FBLN2P98095 1184 aa12.88□□□□□ -0.35
GDE1-202ENST00000563645 MKRN4PQ13434 485 aaPredicted RBP12.82□□□□□ -0.36
GDE1-202ENST00000563645 OSCARQ8IYS5 282 aa12.79□□□□□ -0.36
GDE1-202ENST00000563645 RBM42Q9BTD8 480 aaKnown RBP12.79□□□□□ -0.36
GDE1-202ENST00000563645 SPDYE2BA6NHP3 402 aa12.64□□□□□ -0.39
GDE1-202ENST00000563645 SPDYE6P0CI01 402 aa12.64□□□□□ -0.39
GDE1-202ENST00000563645 SPDYE2Q495Y8 402 aa12.64□□□□□ -0.39
GDE1-202ENST00000563645 AKT1S1Q96B36 256 aa12.58□□□□□ -0.4
GDE1-202ENST00000563645 ZNF692Q9BU19 519 aaPredicted RBP12.53□□□□□ -0.4
GDE1-202ENST00000563645 SSUH2Q9Y2M2 353 aa12.52□□□□□ -0.41
GDE1-202ENST00000563645 SPDYE4A6NLX3 237 aa12.45□□□□□ -0.42
GDE1-202ENST00000563645 REM2Q8IYK8 340 aaPredicted RBP12.45□□□□□ -0.42
GDE1-202ENST00000563645 PABPN1Q86U42 306 aaKnown RBP eCLIP12.37□□□□□ -0.43
GDE1-202ENST00000563645 PITPNM1O00562 1244 aa12.32□□□□□ -0.44
GDE1-202ENST00000563645 CHRDL2Q6WN34 429 aa12.31□□□□□ -0.44
GDE1-202ENST00000563645 FKBP8Q14318 412 aa12.3□□□□□ -0.44
GDE1-202ENST00000563645 SPDYE1Q8NFV5 336 aaPredicted RBP12.3□□□□□ -0.44
GDE1-202ENST00000563645 PROM2Q8N271 834 aa12.25□□□□□ -0.45
GDE1-202ENST00000563645 CLEC11AQ9Y240 323 aa12.23□□□□□ -0.45
GDE1-202ENST00000563645 STAG3Q9UJ98 1225 aa12.14□□□□□ -0.47
GDE1-202ENST00000563645 FXR2P51116 673 aaKnown RBP eCLIP12.12□□□□□ -0.47
GDE1-202ENST00000563645 POTEHQ6S545 545 aa12.11□□□□□ -0.47
GDE1-202ENST00000563645 PIP4P2Q8N4L2 257 aa12.11□□□□□ -0.47
GDE1-202ENST00000563645 PRR29P0C7W0 189 aa12.1□□□□□ -0.47
GDE1-202ENST00000563645 PRKAR2AP13861 404 aaKnown RBP12□□□□□ -0.49
GDE1-202ENST00000563645 CHADLQ6NUI6 762 aa11.94□□□□□ -0.5
GDE1-202ENST00000563645 CREBZFQ9NS37 354 aa11.92□□□□□ -0.5
GDE1-202ENST00000563645 FBXO3Q9UK99 471 aa11.92□□□□□ -0.5
GDE1-202ENST00000563645 FARP1Q9Y4F1 1045 aaPredicted RBP11.83□□□□□ -0.52
GDE1-202ENST00000563645 MIER1Q8N108 512 aa11.8□□□□□ -0.52
GDE1-202ENST00000563645 PLEKHG5O94827 1062 aa11.79□□□□□ -0.52
GDE1-202ENST00000563645 PLCD3Q8N3E9 789 aa11.79□□□□□ -0.52
GDE1-202ENST00000563645 MNX1P50219 401 aaPredicted RBP11.77□□□□□ -0.53
GDE1-202ENST00000563645 VASPP50552 380 aaPredicted RBP11.77□□□□□ -0.53
GDE1-202ENST00000563645 HAX1O00165 279 aa11.75□□□□□ -0.53
GDE1-202ENST00000563645 C19orf67A6NJJ6 358 aa11.72□□□□□ -0.53
GDE1-202ENST00000563645 NPM1P06748 294 aaKnown RBP eCLIP11.72□□□□□ -0.53
GDE1-202ENST00000563645 ZBTB47Q9UFB7 747 aaPredicted RBP11.69□□□□□ -0.54
GDE1-202ENST00000563645 CD44P16070 742 aaKnown RBP11.65□□□□□ -0.54
GDE1-202ENST00000563645 EVX2Q03828 476 aa11.62□□□□□ -0.55
GDE1-202ENST00000563645 PAK3O75914 559 aaPredicted RBP11.58□□□□□ -0.56
GDE1-202ENST00000563645 KLHL34Q8N239 644 aa11.58□□□□□ -0.56
GDE1-202ENST00000563645 SP7Q8TDD2 431 aaPredicted RBP11.58□□□□□ -0.56
GDE1-202ENST00000563645 IFNLR1Q8IU57 520 aaPredicted RBP11.57□□□□□ -0.56
GDE1-202ENST00000563645 NUBP1P53384 320 aa11.55□□□□□ -0.56
GDE1-202ENST00000563645 ZRANB1Q9UGI0 708 aa11.55□□□□□ -0.56
GDE1-202ENST00000563645 RASEFQ8IZ41 740 aa11.54□□□□□ -0.56
GDE1-202ENST00000563645 ZNF579Q8NAF0 562 aaKnown RBP11.52□□□□□ -0.57
GDE1-202ENST00000563645 TSPYL2Q9H2G4 693 aaPredicted RBP11.5□□□□□ -0.57
GDE1-202ENST00000563645 SPOCK2Q92563 424 aa11.48□□□□□ -0.57
GDE1-202ENST00000563645 FAM212AQ96EL1 285 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms